API tools faq
paste
Advertisement
misnomer001

swat no steppe = ivcp1 + sintashta + tarim fail

misnomer001
Aug 16th, 2022
40
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 12.68 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush1
  11. S1X: newpush1
  12. indivname: newpush1.ind
  13. snpname: newpush1.snp
  14. genotypename: newpush1.geno
  15. ## qpAdm version: 1520
  16. seed: 1357410498
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.28102
  20.  
  21. left pops:
  22. Swat_nosteppe
  23. IVCp1
  24. Russia_MLBA_Sintashta
  25. Tarim_EMBA1
  26.  
  27. right pops:
  28. Mbuti.DG
  29. CHG
  30. EHG
  31. China_YR_MN
  32. Turkey_Boncuklu_N
  33. Russia_Shamanka_Eneolithic.SG
  34. WSHG
  35. Turkey_N
  36. PPN
  37. Serbia_IronGates_Mesolithic
  38. Iran_GanjDareh_N
  39. ONG.SG
  40. Uzbekistan_Dzharkutan_BA_1
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 2 dof: 10 chisq: 31.095 tail: 0.000565989036 dofdiff: 12 chisqdiff: -31.095 taildiff: 1
  45. B:
  46. scale 1.000 1.000
  47. CHG 0.225 0.653
  48. EHG 2.068 0.068
  49. China_YR_MN 0.370 -0.903
  50. Turkey_Boncuklu_N 0.406 1.433
  51. Russia_Shamanka_Eneolithic.SG 0.715 -0.989
  52. WSHG 2.382 -1.068
  53. Turkey_N 0.263 1.461
  54. PPN 0.178 1.203
  55. Serbia_IronGates_Mesolithic 1.013 1.556
  56. Iran_GanjDareh_N -0.118 0.073
  57. ONG.SG 0.095 -0.740
  58. Uzbekistan_Dzharkutan_BA_1 0.191 0.158
  59. A:
  60. scale 62.733 123.201
  61. IVCp1 -0.075 -0.188
  62. Russia_MLBA_Sintashta 0.748 1.600
  63. Tarim_EMBA1 1.560 -0.637
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 31.095 taildiff: 0.000565989036
  69. B:
  70. scale 277.042 58.520 38.731
  71. CHG -0.758 0.658 0.096
  72. EHG -1.248 1.480 1.983
  73. China_YR_MN -0.032 -0.425 0.562
  74. Turkey_Boncuklu_N -1.055 1.374 0.104
  75. Russia_Shamanka_Eneolithic.SG 0.057 -0.249 0.905
  76. WSHG -0.910 0.845 2.517
  77. Turkey_N -1.340 1.277 -0.039
  78. PPN -1.285 1.033 -0.064
  79. Serbia_IronGates_Mesolithic -1.364 1.888 0.673
  80. Iran_GanjDareh_N -1.028 -0.053 -0.142
  81. ONG.SG 0.777 -0.464 0.273
  82. Uzbekistan_Dzharkutan_BA_1 -0.977 0.233 0.147
  83. A:
  84. scale 1.732 1.732 1.732
  85. IVCp1 1.732 0.000 0.000
  86. Russia_MLBA_Sintashta 0.000 1.732 0.000
  87. Tarim_EMBA1 0.000 0.000 1.732
  88.  
  89.  
  90. best coefficients: 0.902 0.104 -0.006
  91. totmean: 0.902 0.104 -0.006
  92. boot mean: 0.903 0.103 -0.006
  93. std. errors: 0.020 0.018 0.012
  94.  
  95. error covariance (* 1,000,000)
  96. 391 -277 -114
  97. -277 312 -36
  98. -114 -36 150
  99.  
  100.  
  101. summ: Swat_nosteppe 3 0.000566 0.903 0.103 -0.006 391 -277 -114 312 -36 ...
  102. 150
  103.  
  104. fixed pat wt dof chisq tail prob
  105. 000 0 10 31.095 0.000565989 0.902 0.104 -0.006 infeasible
  106. 001 1 11 38.346 6.83903e-05 0.900 0.100 0.000
  107. 010 1 11 63.698 1.89249e-09 1.000 0.000 0.000
  108. 100 1 11 3412.960 0 0.000 0.597 0.403
  109. 011 2 12 63.450 5.26556e-09 1.000 0.000 0.000
  110. 101 2 12 3783.209 0 0.000 1.000 0.000
  111. 110 2 12 4509.997 0 0.000 0.000 1.000
  112. best pat: 000 0.000565989 - -
  113. best pat: 001 6.83903e-05 chi(nested): 7.251 p-value for nested model: 0.00708566
  114. best pat: 011 5.26556e-09 chi(nested): 25.105 p-value for nested model: 5.42997e-07
  115.  
  116. coeffs: 0.902 0.104 -0.006
  117.  
  118. ## dscore:: f_4(Base, Fit, Rbase, right2)
  119. ## genstat:: f_4(Base, Fit, right1, right2)
  120.  
  121. details: IVCp1 CHG -0.002735 -2.273588
  122. details: Russia_MLBA_Sintashta CHG 0.011241 13.918039
  123. details: Tarim_EMBA1 CHG 0.002466 2.155469
  124. dscore: CHG f4: -0.001318 Z: -1.185382
  125.  
  126. details: IVCp1 EHG -0.004506 -3.685053
  127. details: Russia_MLBA_Sintashta EHG 0.025287 31.625231
  128. details: Tarim_EMBA1 EHG 0.051199 39.014192
  129. dscore: EHG f4: -0.001759 Z: -1.561049
  130.  
  131. details: IVCp1 China_YR_MN -0.000115 -0.098828
  132. details: Russia_MLBA_Sintashta China_YR_MN -0.007258 -9.780113
  133. details: Tarim_EMBA1 China_YR_MN 0.014506 12.754905
  134. dscore: China_YR_MN f4: -0.000945 Z: -0.882175
  135.  
  136. details: IVCp1 Turkey_Boncuklu_N -0.003809 -3.276482
  137. details: Russia_MLBA_Sintashta Turkey_Boncuklu_N 0.023475 31.482347
  138. details: Tarim_EMBA1 Turkey_Boncuklu_N 0.002673 2.573657
  139. dscore: Turkey_Boncuklu_N f4: -0.001021 Z: -0.955773
  140.  
  141. details: IVCp1 Russia_Shamanka_Eneolithic.SG 0.000205 0.204908
  142. details: Russia_MLBA_Sintashta Russia_Shamanka_Eneolithic.SG -0.004254 -5.948541
  143. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.023369 21.803200
  144. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000399 Z: -0.431624
  145.  
  146. details: IVCp1 WSHG -0.003286 -2.572386
  147. details: Russia_MLBA_Sintashta WSHG 0.014432 16.731168
  148. details: Tarim_EMBA1 WSHG 0.065000 48.702062
  149. dscore: WSHG f4: -0.001868 Z: -1.583145
  150.  
  151. details: IVCp1 Turkey_N -0.004836 -4.918467
  152. details: Russia_MLBA_Sintashta Turkey_N 0.021825 34.280953
  153. details: Tarim_EMBA1 Turkey_N -0.000998 -1.093240
  154. dscore: Turkey_N f4: -0.002096 Z: -2.322234
  155.  
  156. details: IVCp1 PPN -0.004638 -3.633895
  157. details: Russia_MLBA_Sintashta PPN 0.017658 21.818231
  158. details: Tarim_EMBA1 PPN -0.001653 -1.488960
  159. dscore: PPN f4: -0.002346 Z: -1.989812
  160.  
  161. details: IVCp1 Serbia_IronGates_Mesolithic -0.004922 -4.482930
  162. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.032258 44.125111
  163. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.017386 16.249889
  164. dscore: Serbia_IronGates_Mesolithic f4: -0.001205 Z: -1.192779
  165.  
  166. details: IVCp1 Iran_GanjDareh_N -0.003711 -3.429702
  167. details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.000899 -1.351695
  168. details: Tarim_EMBA1 Iran_GanjDareh_N -0.003662 -3.610106
  169. dscore: Iran_GanjDareh_N f4: -0.003420 Z: -3.426155
  170.  
  171. details: IVCp1 ONG.SG 0.002806 2.545085
  172. details: Russia_MLBA_Sintashta ONG.SG -0.007920 -10.789940
  173. details: Tarim_EMBA1 ONG.SG 0.007051 6.663329
  174. dscore: ONG.SG f4: 0.001668 Z: 1.636631
  175.  
  176. details: IVCp1 Uzbekistan_Dzharkutan_BA_1 -0.003525 -3.540908
  177. details: Russia_MLBA_Sintashta Uzbekistan_Dzharkutan_BA_1 0.003975 6.272562
  178. details: Tarim_EMBA1 Uzbekistan_Dzharkutan_BA_1 0.003787 4.058310
  179. dscore: Uzbekistan_Dzharkutan_BA_1 f4: -0.002793 Z: -3.038470
  180.  
  181. gendstat: Mbuti.DG CHG -1.185
  182. gendstat: Mbuti.DG EHG -1.561
  183. gendstat: Mbuti.DG China_YR_MN -0.882
  184. gendstat: Mbuti.DG Turkey_Boncuklu_N -0.956
  185. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.432
  186. gendstat: Mbuti.DG WSHG -1.583
  187. gendstat: Mbuti.DG Turkey_N -2.322
  188. gendstat: Mbuti.DG PPN -1.990
  189. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.193
  190. gendstat: Mbuti.DG Iran_GanjDareh_N -3.426
  191. gendstat: Mbuti.DG ONG.SG 1.637
  192. gendstat: Mbuti.DG Uzbekistan_Dzharkutan_BA_1 -3.038
  193. gendstat: CHG EHG -0.365
  194. gendstat: CHG China_YR_MN 0.283
  195. gendstat: CHG Turkey_Boncuklu_N 0.275
  196. gendstat: CHG Russia_Shamanka_Eneolithic.SG 0.796
  197. gendstat: CHG WSHG -0.439
  198. gendstat: CHG Turkey_N -0.775
  199. gendstat: CHG PPN -0.791
  200. gendstat: CHG Serbia_IronGates_Mesolithic 0.106
  201. gendstat: CHG Iran_GanjDareh_N -2.056
  202. gendstat: CHG ONG.SG 2.345
  203. gendstat: CHG Uzbekistan_Dzharkutan_BA_1 -1.596
  204. gendstat: EHG China_YR_MN 0.677
  205. gendstat: EHG Turkey_Boncuklu_N 0.700
  206. gendstat: EHG Russia_Shamanka_Eneolithic.SG 1.290
  207. gendstat: EHG WSHG -0.110
  208. gendstat: EHG Turkey_N -0.376
  209. gendstat: EHG PPN -0.492
  210. gendstat: EHG Serbia_IronGates_Mesolithic 0.657
  211. gendstat: EHG Iran_GanjDareh_N -1.551
  212. gendstat: EHG ONG.SG 2.809
  213. gendstat: EHG Uzbekistan_Dzharkutan_BA_1 -1.083
  214. gendstat: China_YR_MN Turkey_Boncuklu_N -0.064
  215. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 0.725
  216. gendstat: China_YR_MN WSHG -0.741
  217. gendstat: China_YR_MN Turkey_N -1.106
  218. gendstat: China_YR_MN PPN -1.116
  219. gendstat: China_YR_MN Serbia_IronGates_Mesolithic -0.244
  220. gendstat: China_YR_MN Iran_GanjDareh_N -2.156
  221. gendstat: China_YR_MN ONG.SG 2.667
  222. gendstat: China_YR_MN Uzbekistan_Dzharkutan_BA_1 -1.726
  223. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 0.615
  224. gendstat: Turkey_Boncuklu_N WSHG -0.737
  225. gendstat: Turkey_Boncuklu_N Turkey_N -1.644
  226. gendstat: Turkey_Boncuklu_N PPN -1.251
  227. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic -0.224
  228. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N -2.394
  229. gendstat: Turkey_Boncuklu_N ONG.SG 2.317
  230. gendstat: Turkey_Boncuklu_N Uzbekistan_Dzharkutan_BA_1 -2.059
  231. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -1.342
  232. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -1.949
  233. gendstat: Russia_Shamanka_Eneolithic.SG PPN -1.687
  234. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -0.908
  235. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N -2.987
  236. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 2.361
  237. gendstat: Russia_Shamanka_Eneolithic.SG Uzbekistan_Dzharkutan_BA_1 -2.684
  238. gendstat: WSHG Turkey_N -0.226
  239. gendstat: WSHG PPN -0.353
  240. gendstat: WSHG Serbia_IronGates_Mesolithic 0.671
  241. gendstat: WSHG Iran_GanjDareh_N -1.316
  242. gendstat: WSHG ONG.SG 2.873
  243. gendstat: WSHG Uzbekistan_Dzharkutan_BA_1 -0.899
  244. gendstat: Turkey_N PPN -0.283
  245. gendstat: Turkey_N Serbia_IronGates_Mesolithic 1.277
  246. gendstat: Turkey_N Iran_GanjDareh_N -1.617
  247. gendstat: Turkey_N ONG.SG 3.591
  248. gendstat: Turkey_N Uzbekistan_Dzharkutan_BA_1 -1.067
  249. gendstat: PPN Serbia_IronGates_Mesolithic 1.083
  250. gendstat: PPN Iran_GanjDareh_N -0.982
  251. gendstat: PPN ONG.SG 3.148
  252. gendstat: PPN Uzbekistan_Dzharkutan_BA_1 -0.424
  253. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -2.396
  254. gendstat: Serbia_IronGates_Mesolithic ONG.SG 2.698
  255. gendstat: Serbia_IronGates_Mesolithic Uzbekistan_Dzharkutan_BA_1 -1.962
  256. gendstat: Iran_GanjDareh_N ONG.SG 4.593
  257. gendstat: Iran_GanjDareh_N Uzbekistan_Dzharkutan_BA_1 0.827
  258. gendstat: ONG.SG Uzbekistan_Dzharkutan_BA_1 -4.303
  259.  
  260. removing /tmp/fsx.28102
  261. ##end of qpAdm: 13.302 seconds cpu 1.040 Mbytes in use
  262.  
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!