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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1856447082
- read 1073741824 bytes
- read 2057898697 bytes
- packed geno read OK
- end of inpack
- left pops:
- Pakistan_H_SaiduSharif_I6893
- InPe_Native
- Kazakhstan_Kangju.SG
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_Steppe_Eneolithic
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- 0 Pakistan_H_SaiduSharif_I6893 1
- 1 InPe_Native 4
- 2 Kazakhstan_Kangju.SG 6
- 3 Cameroon_SMA.DG 1
- 4 EEHG 5
- 5 WSHG 3
- 6 PPN 11
- 7 WEHG 33
- 8 Anatolia_N 22
- 9 Iran_GanjDareh_N 8
- 10 Russia_Steppe_Eneolithic 3
- 11 Russia_UstBelaya_Angara 8
- 12 ONG.SG 6
- 13 Botai 2
- jackknife block size: 0.050
- snps: 1150510 indivs: 113
- number of blocks for block jackknife: 713
- ## ncols: 1150510
- coverage: Pakistan_H_SaiduSharif_I6893 607446
- coverage: InPe_Native 841356
- coverage: Kazakhstan_Kangju.SG 1117223
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_Steppe_Eneolithic 1008226
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- dof (jackknife): 619.922
- numsnps used: 1150510
- codimension 1
- f4info:
- f4rank: 1 dof: 9 chisq: 12.008 tail: 0.212873139 dofdiff: 11 chisqdiff: -12.008 taildiff: 1
- B:
- scale 1.000
- EEHG 1.280
- WSHG 0.926
- PPN 0.899
- WEHG 1.721
- Anatolia_N 1.335
- Iran_GanjDareh_N -0.048
- Russia_Steppe_Eneolithic 0.972
- Russia_UstBelaya_Angara 0.152
- ONG.SG -0.429
- Botai 0.893
- A:
- scale 742.111
- InPe_Native -1.150
- Kazakhstan_Kangju.SG 0.823
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 12.008 taildiff: 0.212873139
- B:
- scale 659.785 844.427
- EEHG -1.158 1.413
- WSHG -0.756 1.124
- PPN -1.053 0.659
- WEHG -1.893 1.412
- Anatolia_N -1.427 1.130
- Iran_GanjDareh_N -0.022 -0.126
- Russia_Steppe_Eneolithic -0.911 1.000
- Russia_UstBelaya_Angara 0.033 0.403
- ONG.SG 0.395 -0.470
- Botai -0.610 1.278
- A:
- scale 1.414 1.414
- InPe_Native 1.414 0.000
- Kazakhstan_Kangju.SG 0.000 1.414
- best coefficients: 0.417 0.583
- Jackknife mean: 0.417395130 0.582604870
- std. errors: 0.041 0.041
- error covariance (* 1,000,000)
- 1682 -1682
- -1682 1682
- summ: Pakistan_H_SaiduSharif_I6893 2 0.212873 0.417 0.583 1682 -1682 1682
- fixed pat wt dof chisq tail prob
- 00 0 9 12.008 0.212873 0.417 0.583
- 01 1 10 195.865 0 1.000 0.000
- 10 1 10 96.731 2.45251e-16 0.000 1.000
- best pat: 00 0.212873 - -
- best pat: 10 2.45251e-16 chi(nested): 84.724 p-value for nested model: 3.43104e-20
- coeffs: 0.417 0.583
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: InPe_Native EEHG -0.001755 -5.346389
- details: Kazakhstan_Kangju.SG EEHG 0.001673 5.147195
- dscore: EEHG f4: 0.000243 Z: 0.820148
- details: InPe_Native WSHG -0.001145 -3.132494
- details: Kazakhstan_Kangju.SG WSHG 0.001331 3.811859
- dscore: WSHG f4: 0.000298 Z: 0.916040
- details: InPe_Native PPN -0.001595 -4.782326
- details: Kazakhstan_Kangju.SG PPN 0.000780 2.438658
- dscore: PPN f4: -0.000211 Z: -0.704001
- details: InPe_Native WEHG -0.002869 -8.598526
- details: Kazakhstan_Kangju.SG WEHG 0.001672 5.185287
- dscore: WEHG f4: -0.000222 Z: -0.750036
- details: InPe_Native Anatolia_N -0.002163 -7.084063
- details: Kazakhstan_Kangju.SG Anatolia_N 0.001339 4.464888
- dscore: Anatolia_N f4: -0.000122 Z: -0.442983
- details: InPe_Native Iran_GanjDareh_N -0.000034 -0.115371
- details: Kazakhstan_Kangju.SG Iran_GanjDareh_N -0.000149 -0.497269
- dscore: Iran_GanjDareh_N f4: -0.000101 Z: -0.371718
- details: InPe_Native Russia_Steppe_Eneolithic -0.001381 -4.431073
- details: Kazakhstan_Kangju.SG Russia_Steppe_Eneolithic 0.001185 3.828035
- dscore: Russia_Steppe_Eneolithic f4: 0.000114 Z: 0.405034
- details: InPe_Native Russia_UstBelaya_Angara 0.000050 0.165419
- details: Kazakhstan_Kangju.SG Russia_UstBelaya_Angara 0.000477 1.629132
- dscore: Russia_UstBelaya_Angara f4: 0.000299 Z: 1.108814
- details: InPe_Native ONG.SG 0.000598 1.903620
- details: Kazakhstan_Kangju.SG ONG.SG -0.000557 -1.797344
- dscore: ONG.SG f4: -0.000075 Z: -0.265259
- details: InPe_Native Botai -0.000924 -2.587534
- details: Kazakhstan_Kangju.SG Botai 0.001514 4.451601
- dscore: Botai f4: 0.000497 Z: 1.575175
- gendstat: Cameroon_SMA.DG EEHG 0.820
- gendstat: Cameroon_SMA.DG WSHG 0.916
- gendstat: Cameroon_SMA.DG PPN -0.704
- gendstat: Cameroon_SMA.DG WEHG -0.750
- gendstat: Cameroon_SMA.DG Anatolia_N -0.443
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.372
- gendstat: Cameroon_SMA.DG Russia_Steppe_Eneolithic 0.405
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.109
- gendstat: Cameroon_SMA.DG ONG.SG -0.265
- gendstat: Cameroon_SMA.DG Botai 1.575
- gendstat: EEHG WSHG 0.213
- gendstat: EEHG PPN -1.607
- gendstat: EEHG WEHG -2.079
- gendstat: EEHG Anatolia_N -1.504
- gendstat: EEHG Iran_GanjDareh_N -1.298
- gendstat: EEHG Russia_Steppe_Eneolithic -0.515
- gendstat: EEHG Russia_UstBelaya_Angara 0.230
- gendstat: EEHG ONG.SG -1.118
- gendstat: EEHG Botai 0.975
- gendstat: WSHG PPN -1.614
- gendstat: WSHG WEHG -1.895
- gendstat: WSHG Anatolia_N -1.494
- gendstat: WSHG Iran_GanjDareh_N -1.379
- gendstat: WSHG Russia_Steppe_Eneolithic -0.695
- gendstat: WSHG Russia_UstBelaya_Angara 0.004
- gendstat: WSHG ONG.SG -1.179
- gendstat: WSHG Botai 0.738
- gendstat: PPN WEHG -0.046
- gendstat: PPN Anatolia_N 0.451
- gendstat: PPN Iran_GanjDareh_N 0.402
- gendstat: PPN Russia_Steppe_Eneolithic 1.207
- gendstat: PPN Russia_UstBelaya_Angara 1.805
- gendstat: PPN ONG.SG 0.446
- gendstat: PPN Botai 2.253
- gendstat: WEHG Anatolia_N 0.526
- gendstat: WEHG Iran_GanjDareh_N 0.456
- gendstat: WEHG Russia_Steppe_Eneolithic 1.451
- gendstat: WEHG Russia_UstBelaya_Angara 2.033
- gendstat: WEHG ONG.SG 0.533
- gendstat: WEHG Botai 2.716
- gendstat: Anatolia_N Iran_GanjDareh_N 0.094
- gendstat: Anatolia_N Russia_Steppe_Eneolithic 1.031
- gendstat: Anatolia_N Russia_UstBelaya_Angara 1.757
- gendstat: Anatolia_N ONG.SG 0.179
- gendstat: Anatolia_N Botai 2.226
- gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic 0.875
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 1.645
- gendstat: Iran_GanjDareh_N ONG.SG 0.096
- gendstat: Iran_GanjDareh_N Botai 2.055
- gendstat: Russia_Steppe_Eneolithic Russia_UstBelaya_Angara 0.740
- gendstat: Russia_Steppe_Eneolithic ONG.SG -0.649
- gendstat: Russia_Steppe_Eneolithic Botai 1.427
- gendstat: Russia_UstBelaya_Angara ONG.SG -1.657
- gendstat: Russia_UstBelaya_Angara Botai 0.790
- gendstat: ONG.SG Botai 1.955
- ##end of qpAdm: 364.468 seconds cpu 1257.488 Mbytes in use
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