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  1. == 2019-03-15 13:58:45,292 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  2. == 2019-03-15 13:58:45,293 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  3. == 2019-03-15 13:58:45,293 extension.py:154 DEBUG modulename found in self.options, using it: joblib
  4. == 2019-03-15 13:58:45,293 run.py:173 DEBUG run_cmd: running cmd python -c "import joblib" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  5. == 2019-03-15 13:58:45,293 run.py:192 INFO running cmd: python -c "import joblib"
  6. == 2019-03-15 13:58:46,000 run.py:508 DEBUG cmd "python -c "import joblib"" exited with exit code 0 and output:
  7.  
  8. == 2019-03-15 13:58:46,001 extensioneasyblock.py:144 INFO Sanity check for joblib successful!
  9. == 2019-03-15 13:58:46,001 easyblock.py:2261 INFO Sanity check for 'joblib' extension passed!
  10. == 2019-03-15 13:58:46,001 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  11. == 2019-03-15 13:58:46,001 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  12. == 2019-03-15 13:58:46,001 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  13. == 2019-03-15 13:58:46,001 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  14. == 2019-03-15 13:58:46,001 extension.py:154 DEBUG modulename found in self.options, using it: chardet
  15. == 2019-03-15 13:58:46,001 run.py:173 DEBUG run_cmd: running cmd python -c "import chardet" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  16. == 2019-03-15 13:58:46,001 run.py:192 INFO running cmd: python -c "import chardet"
  17. == 2019-03-15 13:58:46,219 run.py:508 DEBUG cmd "python -c "import chardet"" exited with exit code 0 and output:
  18.  
  19. == 2019-03-15 13:58:46,220 extensioneasyblock.py:144 INFO Sanity check for chardet successful!
  20. == 2019-03-15 13:58:46,220 easyblock.py:2261 INFO Sanity check for 'chardet' extension passed!
  21. == 2019-03-15 13:58:46,220 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  22. == 2019-03-15 13:58:46,220 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  23. == 2019-03-15 13:58:46,220 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  24. == 2019-03-15 13:58:46,220 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  25. == 2019-03-15 13:58:46,220 extension.py:154 DEBUG modulename found in self.options, using it: certifi
  26. == 2019-03-15 13:58:46,220 run.py:173 DEBUG run_cmd: running cmd python -c "import certifi" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  27. == 2019-03-15 13:58:46,220 run.py:192 INFO running cmd: python -c "import certifi"
  28. == 2019-03-15 13:58:46,243 run.py:508 DEBUG cmd "python -c "import certifi"" exited with exit code 0 and output:
  29.  
  30. == 2019-03-15 13:58:46,244 extensioneasyblock.py:144 INFO Sanity check for certifi successful!
  31. == 2019-03-15 13:58:46,244 easyblock.py:2261 INFO Sanity check for 'certifi' extension passed!
  32. == 2019-03-15 13:58:46,244 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  33. == 2019-03-15 13:58:46,244 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  34. == 2019-03-15 13:58:46,244 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  35. == 2019-03-15 13:58:46,244 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  36. == 2019-03-15 13:58:46,244 extension.py:154 DEBUG modulename found in self.options, using it: urllib3
  37. == 2019-03-15 13:58:46,244 run.py:173 DEBUG run_cmd: running cmd python -c "import urllib3" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  38. == 2019-03-15 13:58:46,244 run.py:192 INFO running cmd: python -c "import urllib3"
  39. == 2019-03-15 13:58:46,552 run.py:508 DEBUG cmd "python -c "import urllib3"" exited with exit code 0 and output:
  40.  
  41. == 2019-03-15 13:58:46,552 extensioneasyblock.py:144 INFO Sanity check for urllib3 successful!
  42. == 2019-03-15 13:58:46,552 easyblock.py:2261 INFO Sanity check for 'urllib3' extension passed!
  43. == 2019-03-15 13:58:46,553 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  44. == 2019-03-15 13:58:46,553 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  45. == 2019-03-15 13:58:46,553 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  46. == 2019-03-15 13:58:46,553 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  47. == 2019-03-15 13:58:46,553 extension.py:154 DEBUG modulename found in self.options, using it: requests
  48. == 2019-03-15 13:58:46,553 run.py:173 DEBUG run_cmd: running cmd python -c "import requests" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  49. == 2019-03-15 13:58:46,553 run.py:192 INFO running cmd: python -c "import requests"
  50. == 2019-03-15 13:58:46,868 run.py:508 DEBUG cmd "python -c "import requests"" exited with exit code 0 and output:
  51.  
  52. == 2019-03-15 13:58:46,869 extensioneasyblock.py:144 INFO Sanity check for requests successful!
  53. == 2019-03-15 13:58:46,869 easyblock.py:2261 INFO Sanity check for 'requests' extension passed!
  54. == 2019-03-15 13:58:46,869 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  55. == 2019-03-15 13:58:46,869 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  56. == 2019-03-15 13:58:46,869 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  57. == 2019-03-15 13:58:46,869 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  58. == 2019-03-15 13:58:46,869 extension.py:154 DEBUG modulename found in self.options, using it: xlrd
  59. == 2019-03-15 13:58:46,869 run.py:173 DEBUG run_cmd: running cmd python -c "import xlrd" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  60. == 2019-03-15 13:58:46,869 run.py:192 INFO running cmd: python -c "import xlrd"
  61. == 2019-03-15 13:58:47,040 run.py:508 DEBUG cmd "python -c "import xlrd"" exited with exit code 0 and output:
  62.  
  63. == 2019-03-15 13:58:47,040 extensioneasyblock.py:144 INFO Sanity check for xlrd successful!
  64. == 2019-03-15 13:58:47,040 easyblock.py:2261 INFO Sanity check for 'xlrd' extension passed!
  65. == 2019-03-15 13:58:47,040 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  66. == 2019-03-15 13:58:47,041 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  67. == 2019-03-15 13:58:47,041 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  68. == 2019-03-15 13:58:47,041 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  69. == 2019-03-15 13:58:47,041 extension.py:154 DEBUG modulename found in self.options, using it: py_expression_eval
  70. == 2019-03-15 13:58:47,041 run.py:173 DEBUG run_cmd: running cmd python -c "import py_expression_eval" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  71. == 2019-03-15 13:58:47,041 run.py:192 INFO running cmd: python -c "import py_expression_eval"
  72. == 2019-03-15 13:58:47,076 run.py:508 DEBUG cmd "python -c "import py_expression_eval"" exited with exit code 0 and output:
  73.  
  74. == 2019-03-15 13:58:47,077 extensioneasyblock.py:144 INFO Sanity check for py_expression_eval successful!
  75. == 2019-03-15 13:58:47,077 easyblock.py:2261 INFO Sanity check for 'py_expression_eval' extension passed!
  76. == 2019-03-15 13:58:47,077 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  77. == 2019-03-15 13:58:47,077 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  78. == 2019-03-15 13:58:47,077 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  79. == 2019-03-15 13:58:47,077 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  80. == 2019-03-15 13:58:47,077 extension.py:154 DEBUG modulename found in self.options, using it: tabulate
  81. == 2019-03-15 13:58:47,077 run.py:173 DEBUG run_cmd: running cmd python -c "import tabulate" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  82. == 2019-03-15 13:58:47,077 run.py:192 INFO running cmd: python -c "import tabulate"
  83. == 2019-03-15 13:58:47,120 run.py:508 DEBUG cmd "python -c "import tabulate"" exited with exit code 0 and output:
  84.  
  85. == 2019-03-15 13:58:47,120 extensioneasyblock.py:144 INFO Sanity check for tabulate successful!
  86. == 2019-03-15 13:58:47,120 easyblock.py:2261 INFO Sanity check for 'tabulate' extension passed!
  87. == 2019-03-15 13:58:47,120 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  88. == 2019-03-15 13:58:47,121 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  89. == 2019-03-15 13:58:47,121 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  90. == 2019-03-15 13:58:47,121 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  91. == 2019-03-15 13:58:47,121 extension.py:154 DEBUG modulename found in self.options, using it: ujson
  92. == 2019-03-15 13:58:47,121 run.py:173 DEBUG run_cmd: running cmd python -c "import ujson" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  93. == 2019-03-15 13:58:47,121 run.py:192 INFO running cmd: python -c "import ujson"
  94. == 2019-03-15 13:58:47,165 run.py:508 DEBUG cmd "python -c "import ujson"" exited with exit code 0 and output:
  95.  
  96. == 2019-03-15 13:58:47,166 extensioneasyblock.py:144 INFO Sanity check for ujson successful!
  97. == 2019-03-15 13:58:47,166 easyblock.py:2261 INFO Sanity check for 'ujson' extension passed!
  98. == 2019-03-15 13:58:47,166 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  99. == 2019-03-15 13:58:47,166 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  100. == 2019-03-15 13:58:47,166 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  101. == 2019-03-15 13:58:47,166 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  102. == 2019-03-15 13:58:47,166 extension.py:154 DEBUG modulename found in self.options, using it: atomicwrites
  103. == 2019-03-15 13:58:47,166 run.py:173 DEBUG run_cmd: running cmd python -c "import atomicwrites" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  104. == 2019-03-15 13:58:47,166 run.py:192 INFO running cmd: python -c "import atomicwrites"
  105. == 2019-03-15 13:58:47,212 run.py:508 DEBUG cmd "python -c "import atomicwrites"" exited with exit code 0 and output:
  106.  
  107. == 2019-03-15 13:58:47,212 extensioneasyblock.py:144 INFO Sanity check for atomicwrites successful!
  108. == 2019-03-15 13:58:47,212 easyblock.py:2261 INFO Sanity check for 'atomicwrites' extension passed!
  109. == 2019-03-15 13:58:47,212 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  110. == 2019-03-15 13:58:47,212 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  111. == 2019-03-15 13:58:47,212 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  112. == 2019-03-15 13:58:47,212 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  113. == 2019-03-15 13:58:47,212 extension.py:154 DEBUG modulename found in self.options, using it: py
  114. == 2019-03-15 13:58:47,212 run.py:173 DEBUG run_cmd: running cmd python -c "import py" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  115. == 2019-03-15 13:58:47,212 run.py:192 INFO running cmd: python -c "import py"
  116. == 2019-03-15 13:58:47,266 run.py:508 DEBUG cmd "python -c "import py"" exited with exit code 0 and output:
  117.  
  118. == 2019-03-15 13:58:47,266 extensioneasyblock.py:144 INFO Sanity check for py successful!
  119. == 2019-03-15 13:58:47,266 easyblock.py:2261 INFO Sanity check for 'py' extension passed!
  120. == 2019-03-15 13:58:47,266 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  121. == 2019-03-15 13:58:47,266 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  122. == 2019-03-15 13:58:47,267 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  123. == 2019-03-15 13:58:47,267 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  124. == 2019-03-15 13:58:47,267 extension.py:154 DEBUG modulename found in self.options, using it: scandir
  125. == 2019-03-15 13:58:47,267 run.py:173 DEBUG run_cmd: running cmd python -c "import scandir" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  126. == 2019-03-15 13:58:47,267 run.py:192 INFO running cmd: python -c "import scandir"
  127. == 2019-03-15 13:58:47,321 run.py:508 DEBUG cmd "python -c "import scandir"" exited with exit code 0 and output:
  128.  
  129. == 2019-03-15 13:58:47,322 extensioneasyblock.py:144 INFO Sanity check for scandir successful!
  130. == 2019-03-15 13:58:47,322 easyblock.py:2261 INFO Sanity check for 'scandir' extension passed!
  131. == 2019-03-15 13:58:47,322 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  132. == 2019-03-15 13:58:47,322 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  133. == 2019-03-15 13:58:47,322 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  134. == 2019-03-15 13:58:47,322 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  135. == 2019-03-15 13:58:47,322 extension.py:154 DEBUG modulename found in self.options, using it: pathlib2
  136. == 2019-03-15 13:58:47,322 run.py:173 DEBUG run_cmd: running cmd python -c "import pathlib2" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  137. == 2019-03-15 13:58:47,322 run.py:192 INFO running cmd: python -c "import pathlib2"
  138. == 2019-03-15 13:58:47,390 run.py:508 DEBUG cmd "python -c "import pathlib2"" exited with exit code 0 and output:
  139.  
  140. == 2019-03-15 13:58:47,390 extensioneasyblock.py:144 INFO Sanity check for pathlib2 successful!
  141. == 2019-03-15 13:58:47,391 easyblock.py:2261 INFO Sanity check for 'pathlib2' extension passed!
  142. == 2019-03-15 13:58:47,391 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  143. == 2019-03-15 13:58:47,391 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  144. == 2019-03-15 13:58:47,391 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  145. == 2019-03-15 13:58:47,391 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  146. == 2019-03-15 13:58:47,391 extension.py:154 DEBUG modulename found in self.options, using it: pluggy
  147. == 2019-03-15 13:58:47,391 run.py:173 DEBUG run_cmd: running cmd python -c "import pluggy" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  148. == 2019-03-15 13:58:47,391 run.py:192 INFO running cmd: python -c "import pluggy"
  149. == 2019-03-15 13:58:47,485 run.py:508 DEBUG cmd "python -c "import pluggy"" exited with exit code 0 and output:
  150.  
  151. == 2019-03-15 13:58:47,485 extensioneasyblock.py:144 INFO Sanity check for pluggy successful!
  152. == 2019-03-15 13:58:47,485 easyblock.py:2261 INFO Sanity check for 'pluggy' extension passed!
  153. == 2019-03-15 13:58:47,485 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  154. == 2019-03-15 13:58:47,485 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  155. == 2019-03-15 13:58:47,485 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  156. == 2019-03-15 13:58:47,485 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  157. == 2019-03-15 13:58:47,486 extension.py:154 DEBUG modulename found in self.options, using it: more_itertools
  158. == 2019-03-15 13:58:47,486 run.py:173 DEBUG run_cmd: running cmd python -c "import more_itertools" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  159. == 2019-03-15 13:58:47,486 run.py:192 INFO running cmd: python -c "import more_itertools"
  160. == 2019-03-15 13:58:47,558 run.py:508 DEBUG cmd "python -c "import more_itertools"" exited with exit code 0 and output:
  161.  
  162. == 2019-03-15 13:58:47,558 extensioneasyblock.py:144 INFO Sanity check for more-itertools successful!
  163. == 2019-03-15 13:58:47,558 easyblock.py:2261 INFO Sanity check for 'more-itertools' extension passed!
  164. == 2019-03-15 13:58:47,558 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  165. == 2019-03-15 13:58:47,558 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  166. == 2019-03-15 13:58:47,558 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  167. == 2019-03-15 13:58:47,558 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  168. == 2019-03-15 13:58:47,559 extension.py:154 DEBUG modulename found in self.options, using it: attr
  169. == 2019-03-15 13:58:47,559 run.py:173 DEBUG run_cmd: running cmd python -c "import attr" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  170. == 2019-03-15 13:58:47,559 run.py:192 INFO running cmd: python -c "import attr"
  171. == 2019-03-15 13:58:47,667 run.py:508 DEBUG cmd "python -c "import attr"" exited with exit code 0 and output:
  172.  
  173. == 2019-03-15 13:58:47,667 extensioneasyblock.py:144 INFO Sanity check for attrs successful!
  174. == 2019-03-15 13:58:47,667 easyblock.py:2261 INFO Sanity check for 'attrs' extension passed!
  175. == 2019-03-15 13:58:47,668 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  176. == 2019-03-15 13:58:47,668 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  177. == 2019-03-15 13:58:47,668 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  178. == 2019-03-15 13:58:47,668 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  179. == 2019-03-15 13:58:47,668 extension.py:154 DEBUG modulename found in self.options, using it: pytest
  180. == 2019-03-15 13:58:47,668 run.py:173 DEBUG run_cmd: running cmd python -c "import pytest" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  181. == 2019-03-15 13:58:47,668 run.py:192 INFO running cmd: python -c "import pytest"
  182. == 2019-03-15 13:58:48,208 run.py:508 DEBUG cmd "python -c "import pytest"" exited with exit code 0 and output:
  183.  
  184. == 2019-03-15 13:58:48,208 extensioneasyblock.py:144 INFO Sanity check for pytest successful!
  185. == 2019-03-15 13:58:48,208 easyblock.py:2261 INFO Sanity check for 'pytest' extension passed!
  186. == 2019-03-15 13:58:48,208 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  187. == 2019-03-15 13:58:48,208 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  188. == 2019-03-15 13:58:48,209 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  189. == 2019-03-15 13:58:48,209 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  190. == 2019-03-15 13:58:48,209 extension.py:154 DEBUG modulename found in self.options, using it: markupsafe
  191. == 2019-03-15 13:58:48,209 run.py:173 DEBUG run_cmd: running cmd python -c "import markupsafe" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  192. == 2019-03-15 13:58:48,209 run.py:192 INFO running cmd: python -c "import markupsafe"
  193. == 2019-03-15 13:58:48,259 run.py:508 DEBUG cmd "python -c "import markupsafe"" exited with exit code 0 and output:
  194.  
  195. == 2019-03-15 13:58:48,260 extensioneasyblock.py:144 INFO Sanity check for MarkupSafe successful!
  196. == 2019-03-15 13:58:48,260 easyblock.py:2261 INFO Sanity check for 'MarkupSafe' extension passed!
  197. == 2019-03-15 13:58:48,260 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  198. == 2019-03-15 13:58:48,260 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  199. == 2019-03-15 13:58:48,260 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  200. == 2019-03-15 13:58:48,260 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  201. == 2019-03-15 13:58:48,260 extension.py:154 DEBUG modulename found in self.options, using it: jinja2
  202. == 2019-03-15 13:58:48,260 run.py:173 DEBUG run_cmd: running cmd python -c "import jinja2" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  203. == 2019-03-15 13:58:48,260 run.py:192 INFO running cmd: python -c "import jinja2"
  204. == 2019-03-15 13:58:48,420 run.py:508 DEBUG cmd "python -c "import jinja2"" exited with exit code 0 and output:
  205.  
  206. == 2019-03-15 13:58:48,420 extensioneasyblock.py:144 INFO Sanity check for Jinja2 successful!
  207. == 2019-03-15 13:58:48,420 easyblock.py:2261 INFO Sanity check for 'Jinja2' extension passed!
  208. == 2019-03-15 13:58:48,420 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  209. == 2019-03-15 13:58:48,421 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  210. == 2019-03-15 13:58:48,421 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  211. == 2019-03-15 13:58:48,421 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  212. == 2019-03-15 13:58:48,421 extension.py:154 DEBUG modulename found in self.options, using it: packaging
  213. == 2019-03-15 13:58:48,421 run.py:173 DEBUG run_cmd: running cmd python -c "import packaging" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  214. == 2019-03-15 13:58:48,421 run.py:192 INFO running cmd: python -c "import packaging"
  215. == 2019-03-15 13:58:48,443 run.py:508 DEBUG cmd "python -c "import packaging"" exited with exit code 0 and output:
  216.  
  217. == 2019-03-15 13:58:48,443 extensioneasyblock.py:144 INFO Sanity check for packaging successful!
  218. == 2019-03-15 13:58:48,443 easyblock.py:2261 INFO Sanity check for 'packaging' extension passed!
  219. == 2019-03-15 13:58:48,443 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  220. == 2019-03-15 13:58:48,443 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  221. == 2019-03-15 13:58:48,443 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  222. == 2019-03-15 13:58:48,443 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  223. == 2019-03-15 13:58:48,443 extension.py:154 DEBUG modulename found in self.options, using it: sphinxcontrib.websupport
  224. == 2019-03-15 13:58:48,443 run.py:173 DEBUG run_cmd: running cmd python -c "import sphinxcontrib.websupport" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  225. == 2019-03-15 13:58:48,444 run.py:192 INFO running cmd: python -c "import sphinxcontrib.websupport"
  226. == 2019-03-15 13:58:48,968 run.py:508 DEBUG cmd "python -c "import sphinxcontrib.websupport"" exited with exit code 0 and output:
  227.  
  228. == 2019-03-15 13:58:48,969 extensioneasyblock.py:144 INFO Sanity check for sphinxcontrib-websupport successful!
  229. == 2019-03-15 13:58:48,969 easyblock.py:2261 INFO Sanity check for 'sphinxcontrib-websupport' extension passed!
  230. == 2019-03-15 13:58:48,969 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  231. == 2019-03-15 13:58:48,969 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  232. == 2019-03-15 13:58:48,969 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  233. == 2019-03-15 13:58:48,969 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  234. == 2019-03-15 13:58:48,969 extension.py:154 DEBUG modulename found in self.options, using it: pygments
  235. == 2019-03-15 13:58:48,969 run.py:173 DEBUG run_cmd: running cmd python -c "import pygments" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  236. == 2019-03-15 13:58:48,969 run.py:192 INFO running cmd: python -c "import pygments"
  237. == 2019-03-15 13:58:48,993 run.py:508 DEBUG cmd "python -c "import pygments"" exited with exit code 0 and output:
  238.  
  239. == 2019-03-15 13:58:48,993 extensioneasyblock.py:144 INFO Sanity check for Pygments successful!
  240. == 2019-03-15 13:58:48,993 easyblock.py:2261 INFO Sanity check for 'Pygments' extension passed!
  241. == 2019-03-15 13:58:48,993 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  242. == 2019-03-15 13:58:48,993 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  243. == 2019-03-15 13:58:48,993 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  244. == 2019-03-15 13:58:48,993 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  245. == 2019-03-15 13:58:48,993 extension.py:154 DEBUG modulename found in self.options, using it: imagesize
  246. == 2019-03-15 13:58:48,994 run.py:173 DEBUG run_cmd: running cmd python -c "import imagesize" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  247. == 2019-03-15 13:58:48,994 run.py:192 INFO running cmd: python -c "import imagesize"
  248. == 2019-03-15 13:58:49,015 run.py:508 DEBUG cmd "python -c "import imagesize"" exited with exit code 0 and output:
  249.  
  250. == 2019-03-15 13:58:49,015 extensioneasyblock.py:144 INFO Sanity check for imagesize successful!
  251. == 2019-03-15 13:58:49,016 easyblock.py:2261 INFO Sanity check for 'imagesize' extension passed!
  252. == 2019-03-15 13:58:49,016 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  253. == 2019-03-15 13:58:49,016 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  254. == 2019-03-15 13:58:49,016 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  255. == 2019-03-15 13:58:49,016 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  256. == 2019-03-15 13:58:49,016 extension.py:154 DEBUG modulename found in self.options, using it: docutils
  257. == 2019-03-15 13:58:49,016 run.py:173 DEBUG run_cmd: running cmd python -c "import docutils" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  258. == 2019-03-15 13:58:49,016 run.py:192 INFO running cmd: python -c "import docutils"
  259. == 2019-03-15 13:58:49,037 run.py:508 DEBUG cmd "python -c "import docutils"" exited with exit code 0 and output:
  260.  
  261. == 2019-03-15 13:58:49,037 extensioneasyblock.py:144 INFO Sanity check for docutils successful!
  262. == 2019-03-15 13:58:49,037 easyblock.py:2261 INFO Sanity check for 'docutils' extension passed!
  263. == 2019-03-15 13:58:49,037 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  264. == 2019-03-15 13:58:49,037 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  265. == 2019-03-15 13:58:49,037 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  266. == 2019-03-15 13:58:49,037 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  267. == 2019-03-15 13:58:49,037 extension.py:154 DEBUG modulename found in self.options, using it: snowballstemmer
  268. == 2019-03-15 13:58:49,038 run.py:173 DEBUG run_cmd: running cmd python -c "import snowballstemmer" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  269. == 2019-03-15 13:58:49,038 run.py:192 INFO running cmd: python -c "import snowballstemmer"
  270. == 2019-03-15 13:58:49,128 run.py:508 DEBUG cmd "python -c "import snowballstemmer"" exited with exit code 0 and output:
  271.  
  272. == 2019-03-15 13:58:49,129 extensioneasyblock.py:144 INFO Sanity check for snowballstemmer successful!
  273. == 2019-03-15 13:58:49,129 easyblock.py:2261 INFO Sanity check for 'snowballstemmer' extension passed!
  274. == 2019-03-15 13:58:49,129 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  275. == 2019-03-15 13:58:49,129 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  276. == 2019-03-15 13:58:49,129 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  277. == 2019-03-15 13:58:49,129 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  278. == 2019-03-15 13:58:49,129 extension.py:154 DEBUG modulename found in self.options, using it: babel
  279. == 2019-03-15 13:58:49,129 run.py:173 DEBUG run_cmd: running cmd python -c "import babel" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  280. == 2019-03-15 13:58:49,129 run.py:192 INFO running cmd: python -c "import babel"
  281. == 2019-03-15 13:58:49,164 run.py:508 DEBUG cmd "python -c "import babel"" exited with exit code 0 and output:
  282.  
  283. == 2019-03-15 13:58:49,164 extensioneasyblock.py:144 INFO Sanity check for Babel successful!
  284. == 2019-03-15 13:58:49,164 easyblock.py:2261 INFO Sanity check for 'Babel' extension passed!
  285. == 2019-03-15 13:58:49,164 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  286. == 2019-03-15 13:58:49,165 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  287. == 2019-03-15 13:58:49,165 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  288. == 2019-03-15 13:58:49,165 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  289. == 2019-03-15 13:58:49,165 extension.py:154 DEBUG modulename found in self.options, using it: alabaster
  290. == 2019-03-15 13:58:49,165 run.py:173 DEBUG run_cmd: running cmd python -c "import alabaster" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  291. == 2019-03-15 13:58:49,165 run.py:192 INFO running cmd: python -c "import alabaster"
  292. == 2019-03-15 13:58:49,187 run.py:508 DEBUG cmd "python -c "import alabaster"" exited with exit code 0 and output:
  293.  
  294. == 2019-03-15 13:58:49,188 extensioneasyblock.py:144 INFO Sanity check for alabaster successful!
  295. == 2019-03-15 13:58:49,188 easyblock.py:2261 INFO Sanity check for 'alabaster' extension passed!
  296. == 2019-03-15 13:58:49,188 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  297. == 2019-03-15 13:58:49,188 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  298. == 2019-03-15 13:58:49,188 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  299. == 2019-03-15 13:58:49,188 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  300. == 2019-03-15 13:58:49,188 extension.py:154 DEBUG modulename found in self.options, using it: typing
  301. == 2019-03-15 13:58:49,188 run.py:173 DEBUG run_cmd: running cmd python -c "import typing" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  302. == 2019-03-15 13:58:49,188 run.py:192 INFO running cmd: python -c "import typing"
  303. == 2019-03-15 13:58:49,218 run.py:508 DEBUG cmd "python -c "import typing"" exited with exit code 0 and output:
  304.  
  305. == 2019-03-15 13:58:49,218 extensioneasyblock.py:144 INFO Sanity check for typing successful!
  306. == 2019-03-15 13:58:49,218 easyblock.py:2261 INFO Sanity check for 'typing' extension passed!
  307. == 2019-03-15 13:58:49,218 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  308. == 2019-03-15 13:58:49,219 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  309. == 2019-03-15 13:58:49,219 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  310. == 2019-03-15 13:58:49,219 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  311. == 2019-03-15 13:58:49,219 extension.py:154 DEBUG modulename found in self.options, using it: sphinx
  312. == 2019-03-15 13:58:49,219 run.py:173 DEBUG run_cmd: running cmd python -c "import sphinx" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  313. == 2019-03-15 13:58:49,219 run.py:192 INFO running cmd: python -c "import sphinx"
  314. == 2019-03-15 13:58:49,239 run.py:508 DEBUG cmd "python -c "import sphinx"" exited with exit code 0 and output:
  315.  
  316. == 2019-03-15 13:58:49,239 extensioneasyblock.py:144 INFO Sanity check for Sphinx successful!
  317. == 2019-03-15 13:58:49,239 easyblock.py:2261 INFO Sanity check for 'Sphinx' extension passed!
  318. == 2019-03-15 13:58:49,239 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  319. == 2019-03-15 13:58:49,239 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  320. == 2019-03-15 13:58:49,239 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  321. == 2019-03-15 13:58:49,239 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  322. == 2019-03-15 13:58:49,239 extension.py:154 DEBUG modulename found in self.options, using it: click
  323. == 2019-03-15 13:58:49,240 run.py:173 DEBUG run_cmd: running cmd python -c "import click" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  324. == 2019-03-15 13:58:49,240 run.py:192 INFO running cmd: python -c "import click"
  325. == 2019-03-15 13:58:49,285 run.py:508 DEBUG cmd "python -c "import click"" exited with exit code 0 and output:
  326.  
  327. == 2019-03-15 13:58:49,285 extensioneasyblock.py:144 INFO Sanity check for Click successful!
  328. == 2019-03-15 13:58:49,285 easyblock.py:2261 INFO Sanity check for 'Click' extension passed!
  329. == 2019-03-15 13:58:49,286 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  330. == 2019-03-15 13:58:49,286 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  331. == 2019-03-15 13:58:49,286 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  332. == 2019-03-15 13:58:49,286 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  333. == 2019-03-15 13:58:49,286 extension.py:154 DEBUG modulename found in self.options, using it: psutil
  334. == 2019-03-15 13:58:49,286 run.py:173 DEBUG run_cmd: running cmd python -c "import psutil" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  335. == 2019-03-15 13:58:49,286 run.py:192 INFO running cmd: python -c "import psutil"
  336. == 2019-03-15 13:58:49,342 run.py:508 DEBUG cmd "python -c "import psutil"" exited with exit code 0 and output:
  337.  
  338. == 2019-03-15 13:58:49,342 extensioneasyblock.py:144 INFO Sanity check for psutil successful!
  339. == 2019-03-15 13:58:49,342 easyblock.py:2261 INFO Sanity check for 'psutil' extension passed!
  340. == 2019-03-15 13:58:49,342 pythonpackage.py:573 INFO Detection of downloaded depenencies enabled, checking output of installation command...
  341. == 2019-03-15 13:58:49,342 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  342. == 2019-03-15 13:58:49,342 easyconfig.py:1423 WARNING Unable to resolve template value python -c "import %(ext_name)s" with dict {'bitbucket_account': 'python', 'nameletterlower': 'p', 'versionsuffix': '', 'toolchain_name': 'GCCcore', 'namelower': 'python', 'version_minor': '7', 'arch': 'x86_64', 'name': 'Python', 'versionprefix': '', 'version_major': '2', 'nameletter': 'P', 'version_major_minor': '2.7', 'version': '2.7.15', 'github_account': 'python', 'toolchain_version': '8.2.0'}
  343. == 2019-03-15 13:58:49,342 extensioneasyblock.py:123 DEBUG starting sanity check for extension with filter ('python -c "import %(ext_name)s"', '')
  344. == 2019-03-15 13:58:49,343 extension.py:154 DEBUG modulename found in self.options, using it: future
  345. == 2019-03-15 13:58:49,343 run.py:173 DEBUG run_cmd: running cmd python -c "import future" (in /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0)
  346. == 2019-03-15 13:58:49,343 run.py:192 INFO running cmd: python -c "import future"
  347. == 2019-03-15 13:58:49,362 run.py:508 DEBUG cmd "python -c "import future"" exited with exit code 0 and output:
  348.  
  349. == 2019-03-15 13:58:49,362 extensioneasyblock.py:144 INFO Sanity check for future successful!
  350. == 2019-03-15 13:58:49,362 easyblock.py:2261 INFO Sanity check for 'future' extension passed!
  351. == 2019-03-15 13:58:49,362 easyblock.py:2265 WARNING extensions sanity check failed for 2 extensions:
  352. == 2019-03-15 13:58:49,362 modules.py:715 DEBUG Current MODULEPATH: /tmp/eb-xKlSad/tmpDlyA92/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles
  353. == 2019-03-15 13:58:49,362 modules.py:722 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib' to '' in environment for module command
  354. == 2019-03-15 13:58:49,362 modules.py:722 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  355. == 2019-03-15 13:58:49,362 modules.py:726 DEBUG Running module command '/mgmt/modules/Modules/3.2.10/bin/modulecmd python unload Python/2.7.15-GCCcore-8.2.0' from /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0
  356. == 2019-03-15 13:58:49,374 modules.py:732 DEBUG Output of module command '/mgmt/modules/Modules/3.2.10/bin/modulecmd python unload Python/2.7.15-GCCcore-8.2.0': stdout: os.environ['CPATH'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/include:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include:/well/rescomp/eb/software/GCCcore/8.2.0/include'
  357. os.environ['LIBRARY_PATH'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib'
  358. os.environ['LOADEDMODULES'] = 'EasyBuild/3.8.1:GCCcore/8.2.0:bzip2/1.0.6-GCCcore-8.2.0:zlib/1.2.11-GCCcore-8.2.0:ncurses/6.1-GCCcore-8.2.0:libreadline/8.0-GCCcore-8.2.0:Tcl/8.6.9-GCCcore-8.2.0:SQLite/3.27.2-GCCcore-8.2.0:GMP/6.1.2-GCCcore-8.2.0:libffi/3.2.1-GCCcore-8.2.0'
  359. os.environ['MANPATH'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/man:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/man:/well/rescomp/eb/software/GCCcore/8.2.0/share/man:/mgmt/uge/8.5.0/man:/mgmt/uge/8.5.0/man:/usr/share/man:/usr/local/share/man'
  360. os.environ['PATH'] = '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/bin:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/bin:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/bin:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/bin:/well/rescomp/eb/software/GCCcore/8.2.0/bin:/well/rescomp/eb/software/EasyBuild/3.8.1/bin:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/mgmt/modules/Modules/3.2.10/bin/'
  361. os.environ['PKG_CONFIG_PATH'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib/pkgconfig:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib/pkgconfig:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib/pkgconfig:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib/pkgconfig:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib/pkgconfig'
  362. os.environ['_LMFILES_'] = '/well/rescomp/eb/modules/all/EasyBuild/3.8.1:/well/rescomp/eb/modules/all/GCCcore/8.2.0:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-8.2.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-8.2.0:/well/rescomp/eb/modules/all/ncurses/6.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libreadline/8.0-GCCcore-8.2.0:/well/rescomp/eb/modules/all/Tcl/8.6.9-GCCcore-8.2.0:/well/rescomp/eb/modules/all/SQLite/3.27.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-8.2.0'
  363. os.environ['EBDEVELPYTHON'] = ''
  364. del os.environ['EBDEVELPYTHON']
  365. os.environ['EBEXTSLISTPYTHON'] = ''
  366. del os.environ['EBEXTSLISTPYTHON']
  367. os.environ['EBROOTPYTHON'] = ''
  368. del os.environ['EBROOTPYTHON']
  369. os.environ['EBVERSIONPYTHON'] = ''
  370. del os.environ['EBVERSIONPYTHON']
  371. ; stderr:
  372. == 2019-03-15 13:58:49,375 modules.py:672 DEBUG No checking of module output implemented for EnvironmentModulesC
  373. == 2019-03-15 13:58:49,375 modules.py:769 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0', '/well/rescomp/eb/software/GCCcore/8.2.0/lib64', '/well/rescomp/eb/software/GCCcore/8.2.0/lib'] to ['/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0', '/well/rescomp/eb/software/GCCcore/8.2.0/lib64', '/well/rescomp/eb/software/GCCcore/8.2.0/lib']
  374. == 2019-03-15 13:58:49,375 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib (previous value: '/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib')
  375. == 2019-03-15 13:58:49,375 modules.py:769 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  376. == 2019-03-15 13:58:49,375 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
  377. == 2019-03-15 13:58:49,375 modules.py:715 DEBUG Current MODULEPATH: /tmp/eb-xKlSad/tmpDlyA92/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles
  378. == 2019-03-15 13:58:49,376 modules.py:722 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib' to '' in environment for module command
  379. == 2019-03-15 13:58:49,376 modules.py:722 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  380. == 2019-03-15 13:58:49,376 modules.py:726 DEBUG Running module command '/mgmt/modules/Modules/3.2.10/bin/modulecmd python unuse /tmp/eb-xKlSad/tmpDlyA92/all/' from /gpfs2/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0
  381. == 2019-03-15 13:58:49,384 modules.py:732 DEBUG Output of module command '/mgmt/modules/Modules/3.2.10/bin/modulecmd python unuse /tmp/eb-xKlSad/tmpDlyA92/all/': stdout: os.environ['MODULEPATH'] = '/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles'
  382. ; stderr:
  383. == 2019-03-15 13:58:49,384 modules.py:672 DEBUG No checking of module output implemented for EnvironmentModulesC
  384. == 2019-03-15 13:58:49,385 modules.py:769 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0', '/well/rescomp/eb/software/GCCcore/8.2.0/lib64', '/well/rescomp/eb/software/GCCcore/8.2.0/lib'] to ['/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib', '/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0', '/well/rescomp/eb/software/GCCcore/8.2.0/lib64', '/well/rescomp/eb/software/GCCcore/8.2.0/lib']
  385. == 2019-03-15 13:58:49,385 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib (previous value: '/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib')
  386. == 2019-03-15 13:58:49,385 modules.py:769 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  387. == 2019-03-15 13:58:49,385 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
  388. == 2019-03-15 13:58:49,385 modules.py:332 DEBUG $MODULEPATH after set_mod_paths: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles
  389. == 2019-03-15 13:58:49,385 filetools.py:1297 INFO Path /tmp/eb-xKlSad/tmpDlyA92 successfully removed.
  390. == 2019-03-15 13:58:49,385 environment.py:170 DEBUG Key in new environment found that is not in old one: CPPFLAGS (-I/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include -I/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include)
  391. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable CPPFLAGS set to -I/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include -I/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include (previously undefined)
  392. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCC (gcc)
  393. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
  394. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  395. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  396. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCXXFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  397. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  398. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF90 (gfortran)
  399. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
  400. == 2019-03-15 13:58:49,386 environment.py:167 DEBUG Key in new environment found that is different from old one: MANPATH (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/man:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/man:/well/rescomp/eb/software/GCCcore/8.2.0/share/man:/mgmt/uge/8.5.0/man:/mgmt/uge/8.5.0/man:/usr/share/man:/usr/local/share/man)
  401. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable MANPATH set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/man:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/man:/well/rescomp/eb/software/GCCcore/8.2.0/share/man:/mgmt/uge/8.5.0/man:/mgmt/uge/8.5.0/man:/usr/share/man:/usr/local/share/man (previous value: '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/man:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/share/man:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/man:/well/rescomp/eb/software/GCCcore/8.2.0/share/man:/mgmt/uge/8.5.0/man:/mgmt/uge/8.5.0/man:/usr/share/man:/usr/local/share/man')
  402. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBROOTBINUTILS (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0)
  403. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBROOTBINUTILS set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0 (previously undefined)
  404. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFLIBS (-lgfortran)
  405. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
  406. == 2019-03-15 13:58:49,386 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFCFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  407. == 2019-03-15 13:58:49,386 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  408. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: CXX (g++)
  409. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
  410. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVAROPTFLAGS (-O2 -ftree-vectorize -march=native)
  411. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  412. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF90FLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  413. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  414. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARPRECFLAGS (-fno-math-errno)
  415. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
  416. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF77 (gfortran)
  417. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
  418. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFC (gfortran)
  419. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
  420. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: EBDEVELBINUTILS (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/easybuild/binutils-2.31.1-GCCcore-8.2.0-easybuild-devel)
  421. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable EBDEVELBINUTILS set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/easybuild/binutils-2.31.1-GCCcore-8.2.0-easybuild-devel (previously undefined)
  422. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: FFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  423. == 2019-03-15 13:58:49,387 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  424. == 2019-03-15 13:58:49,387 environment.py:170 DEBUG Key in new environment found that is not in old one: FCFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  425. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  426. == 2019-03-15 13:58:49,388 environment.py:167 DEBUG Key in new environment found that is different from old one: _LMFILES_ (/well/rescomp/eb/modules/all/EasyBuild/3.8.1:/well/rescomp/eb/modules/all/GCCcore/8.2.0:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-8.2.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-8.2.0:/well/rescomp/eb/modules/all/ncurses/6.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libreadline/8.0-GCCcore-8.2.0:/well/rescomp/eb/modules/all/Tcl/8.6.9-GCCcore-8.2.0:/well/rescomp/eb/modules/all/SQLite/3.27.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/binutils/2.31.1-GCCcore-8.2.0)
  427. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable _LMFILES_ set to /well/rescomp/eb/modules/all/EasyBuild/3.8.1:/well/rescomp/eb/modules/all/GCCcore/8.2.0:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-8.2.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-8.2.0:/well/rescomp/eb/modules/all/ncurses/6.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libreadline/8.0-GCCcore-8.2.0:/well/rescomp/eb/modules/all/Tcl/8.6.9-GCCcore-8.2.0:/well/rescomp/eb/modules/all/SQLite/3.27.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/binutils/2.31.1-GCCcore-8.2.0 (previous value: '/well/rescomp/eb/modules/all/EasyBuild/3.8.1:/well/rescomp/eb/modules/all/GCCcore/8.2.0:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-8.2.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-8.2.0:/well/rescomp/eb/modules/all/ncurses/6.1-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libreadline/8.0-GCCcore-8.2.0:/well/rescomp/eb/modules/all/Tcl/8.6.9-GCCcore-8.2.0:/well/rescomp/eb/modules/all/SQLite/3.27.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-8.2.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-8.2.0')
  428. == 2019-03-15 13:58:49,388 environment.py:170 DEBUG Key in new environment found that is not in old one: CXXFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  429. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  430. == 2019-03-15 13:58:49,388 environment.py:170 DEBUG Key in new environment found that is not in old one: FC (gfortran)
  431. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
  432. == 2019-03-15 13:58:49,388 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLDFLAGS (-L/well/rescomp/eb/software/GCCcore/8.2.0/lib64 -L/well/rescomp/eb/software/GCCcore/8.2.0/lib -L/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64 -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib)
  433. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/well/rescomp/eb/software/GCCcore/8.2.0/lib64 -L/well/rescomp/eb/software/GCCcore/8.2.0/lib -L/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64 -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib (previously undefined)
  434. == 2019-03-15 13:58:49,388 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBS (-lm -lpthread)
  435. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
  436. == 2019-03-15 13:58:49,388 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCXX (g++)
  437. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
  438. == 2019-03-15 13:58:49,388 environment.py:167 DEBUG Key in new environment found that is different from old one: LD_LIBRARY_PATH (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib)
  439. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib (previous value: '/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib')
  440. == 2019-03-15 13:58:49,388 environment.py:167 DEBUG Key in new environment found that is different from old one: LIBRARY_PATH (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib)
  441. == 2019-03-15 13:58:49,388 environment.py:97 INFO Environment variable LIBRARY_PATH set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib (previous value: '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/lib:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib:/well/rescomp/eb/software/GCCcore/8.2.0/lib64:/well/rescomp/eb/software/GCCcore/8.2.0/lib')
  442. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: FLIBS (-lgfortran)
  443. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
  444. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: F90 (gfortran)
  445. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
  446. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: F90FLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  447. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  448. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVERSIONBINUTILS (2.31.1)
  449. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable EBVERSIONBINUTILS set to 2.31.1 (previously undefined)
  450. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: CC (gcc)
  451. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
  452. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: PRECFLAGS (-fno-math-errno)
  453. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
  454. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: F77 (gfortran)
  455. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
  456. == 2019-03-15 13:58:49,389 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBS (-lm -lpthread)
  457. == 2019-03-15 13:58:49,389 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
  458. == 2019-03-15 13:58:49,389 environment.py:167 DEBUG Key in new environment found that is different from old one: CPATH (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/include:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include:/well/rescomp/eb/software/GCCcore/8.2.0/include)
  459. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable CPATH set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/include:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include:/well/rescomp/eb/software/GCCcore/8.2.0/include (previous value: '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/include:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include:/well/rescomp/eb/software/GCCcore/8.2.0/include')
  460. == 2019-03-15 13:58:49,390 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCPPFLAGS (-I/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include -I/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include)
  461. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/include -I/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/include -I/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/include -I/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/include (previously undefined)
  462. == 2019-03-15 13:58:49,390 environment.py:167 DEBUG Key in new environment found that is different from old one: PATH (/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/bin:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/bin:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/bin:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/bin:/well/rescomp/eb/software/GCCcore/8.2.0/bin:/well/rescomp/eb/software/EasyBuild/3.8.1/bin:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/mgmt/modules/Modules/3.2.10/bin/)
  463. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable PATH set to /well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/bin:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/bin:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/bin:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/bin:/well/rescomp/eb/software/GCCcore/8.2.0/bin:/well/rescomp/eb/software/EasyBuild/3.8.1/bin:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/mgmt/modules/Modules/3.2.10/bin/ (previous value: '/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/bin:/well/rescomp/eb/software/Tcl/8.6.9-GCCcore-8.2.0/bin:/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/bin:/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/bin:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/bin:/well/rescomp/eb/software/GCCcore/8.2.0/bin:/well/rescomp/eb/software/EasyBuild/3.8.1/bin:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/well/rescomp/adamh/anaconda/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/mgmt/modules/Modules/3.2.10/bin/')
  464. == 2019-03-15 13:58:49,390 environment.py:170 DEBUG Key in new environment found that is not in old one: LDFLAGS (-L/well/rescomp/eb/software/GCCcore/8.2.0/lib64 -L/well/rescomp/eb/software/GCCcore/8.2.0/lib -L/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64 -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib)
  465. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable LDFLAGS set to -L/well/rescomp/eb/software/GCCcore/8.2.0/lib64 -L/well/rescomp/eb/software/GCCcore/8.2.0/lib -L/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libreadline/8.0-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/ncurses/6.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/SQLite/3.27.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib64 -L/well/rescomp/eb/software/libffi/3.2.1-GCCcore-8.2.0/lib -L/well/rescomp/eb/software/binutils/2.31.1-GCCcore-8.2.0/lib (previously undefined)
  466. == 2019-03-15 13:58:49,390 environment.py:170 DEBUG Key in new environment found that is not in old one: OPTFLAGS (-O2 -ftree-vectorize -march=native)
  467. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  468. == 2019-03-15 13:58:49,390 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  469. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  470. == 2019-03-15 13:58:49,390 environment.py:167 DEBUG Key in new environment found that is different from old one: LOADEDMODULES (EasyBuild/3.8.1:GCCcore/8.2.0:bzip2/1.0.6-GCCcore-8.2.0:zlib/1.2.11-GCCcore-8.2.0:ncurses/6.1-GCCcore-8.2.0:libreadline/8.0-GCCcore-8.2.0:Tcl/8.6.9-GCCcore-8.2.0:SQLite/3.27.2-GCCcore-8.2.0:GMP/6.1.2-GCCcore-8.2.0:libffi/3.2.1-GCCcore-8.2.0:binutils/2.31.1-GCCcore-8.2.0)
  471. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable LOADEDMODULES set to EasyBuild/3.8.1:GCCcore/8.2.0:bzip2/1.0.6-GCCcore-8.2.0:zlib/1.2.11-GCCcore-8.2.0:ncurses/6.1-GCCcore-8.2.0:libreadline/8.0-GCCcore-8.2.0:Tcl/8.6.9-GCCcore-8.2.0:SQLite/3.27.2-GCCcore-8.2.0:GMP/6.1.2-GCCcore-8.2.0:libffi/3.2.1-GCCcore-8.2.0:binutils/2.31.1-GCCcore-8.2.0 (previous value: 'EasyBuild/3.8.1:GCCcore/8.2.0:bzip2/1.0.6-GCCcore-8.2.0:zlib/1.2.11-GCCcore-8.2.0:ncurses/6.1-GCCcore-8.2.0:libreadline/8.0-GCCcore-8.2.0:Tcl/8.6.9-GCCcore-8.2.0:SQLite/3.27.2-GCCcore-8.2.0:GMP/6.1.2-GCCcore-8.2.0:libffi/3.2.1-GCCcore-8.2.0')
  472. == 2019-03-15 13:58:49,390 environment.py:170 DEBUG Key in new environment found that is not in old one: CFLAGS (-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC)
  473. == 2019-03-15 13:58:49,390 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC (previously undefined)
  474. == 2019-03-15 13:58:49,391 easyblock.py:2365 DEBUG Skiping RPATH sanity check
  475. == 2019-03-15 13:58:49,504 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
  476. failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
  477. Traceback (most recent call last):
  478.   File "<string>", line 1, in <module>
  479.   File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
  480.     from . import _bcrypt
  481. ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,
  482. failing sanity check for 'paramiko' extension: command "python -c "import paramiko"" failed; output:
  483. Traceback (most recent call last):
  484.   File "<string>", line 1, in <module>
  485.   File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/paramiko/__init__.py", line 22, in <module>
  486.     from paramiko.transport import SecurityOptions, Transport
  487.   File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/paramiko/transport.py", line 90, in <module>
  488.     from paramiko.ed25519key import Ed25519Key
  489.   File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/paramiko/ed25519key.py", line 17, in <module>
  490.     import bcrypt
  491.   File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
  492.     from . import _bcrypt
  493. ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,  (at easybuild/framework/easyblock.py:2369 in _sanity_check_step)
  494. == 2019-03-15 13:58:49,504 easyblock.py:2870 WARNING build failed (first 300 chars): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
  495. failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
  496. Traceback (most recent call last):
  497.   File "<string>", line 1, in <module>
  498.   File "/well/rescomp/eb/software/Python/2
  499. == 2019-03-15 13:58:49,504 easyblock.py:288 INFO Closing log for application name Python version 2.7.15
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