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- > mod1 <- coxph(
- > Surv(db3$time, db3$panier) ~ sex + vaccination + age_class,
- > data = db3
- > )
- > summary(mod1)
- Call:
- coxph(formula = Surv(db3$time, db3$panier) ~ sex + vaccination +
- age_class, data = db3)
- n= 2437352, number of events= 211732
- coef exp(coef) se(coef) z Pr(>|z|)
- sex1 -0.132444 0.875952 0.004624 -28.64 <2e-16 ***
- vaccination -0.405701 0.666509 0.006545 -61.99 <2e-16 ***
- age_class(10,20] -0.407904 0.665043 0.014687 -27.77 <2e-16 ***
- age_class(20,30] -0.903083 0.405318 0.012527 -72.09 <2e-16 ***
- age_class(30,40] -0.948397 0.387362 0.011552 -82.10 <2e-16 ***
- age_class(40,50] -1.045602 0.351480 0.011140 -93.86 <2e-16 ***
- age_class(50,60] -1.134455 0.321597 0.010823 -104.82 <2e-16 ***
- age_class(60,70] -1.303770 0.271506 0.010889 -119.73 <2e-16 ***
- age_class(70,80] -1.415494 0.242806 0.011778 -120.18 <2e-16 ***
- age_class(80,90] -1.615479 0.198796 0.013093 -123.39 <2e-16 ***
- age_class(90,100] -2.024649 0.132040 0.023573 -85.89 <2e-16 ***
- ---
- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
- exp(coef) exp(-coef) lower .95 upper .95
- sex1 0.8760 1.142 0.8680 0.8839
- vaccination 0.6665 1.500 0.6580 0.6751
- age_class(10,20] 0.6650 1.504 0.6462 0.6845
- age_class(20,30] 0.4053 2.467 0.3955 0.4154
- age_class(30,40] 0.3874 2.582 0.3787 0.3962
- age_class(40,50] 0.3515 2.845 0.3439 0.3592
- age_class(50,60] 0.3216 3.109 0.3148 0.3285
- age_class(60,70] 0.2715 3.683 0.2658 0.2774
- age_class(70,80] 0.2428 4.119 0.2373 0.2485
- age_class(80,90] 0.1988 5.030 0.1938 0.2040
- age_class(90,100] 0.1320 7.573 0.1261 0.1383
- Concordance= 0.619 (se = 0.001 )
- Rsquare= 0.016 (max possible= 0.92 )
- Likelihood ratio test= 40343 on 11 df, p=0
- Wald test = 42384 on 11 df, p=0
- Score (logrank) test = 47349 on 11 df, p=0
- > validation <- cox.zph(mod1)
- > validation
- rho chisq p
- sex1 -0.028494 1.72e+02 0.00e+00
- vaccination 0.210335 9.30e+03 0.00e+00
- age_class(10,20] 0.009616 1.96e+01 9.65e-06
- age_class(20,30] -0.005949 7.50e+00 6.18e-03
- age_class(30,40] -0.004818 4.92e+00 2.66e-02
- age_class(40,50] -0.000899 1.71e-01 6.79e-01
- age_class(50,60] 0.007783 1.28e+01 3.45e-04
- age_class(60,70] 0.001600 5.40e-01 4.62e-01
- age_class(70,80] -0.013171 3.66e+01 1.47e-09
- age_class(80,90] -0.021582 9.90e+01 0.00e+00
- age_class(90,100] -0.018040 6.92e+01 1.11e-16
- GLOBAL NA 1.05e+04 0.00e+00
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