public static void tryp(String inputString){
		int index = 0;

		String[] rArray = new String[1000];
		String[] kArray = new String[1000];

		int startPos = 0;
		int x;
		int newRPos = 0;
		int newKPos = 0;
		String protString;

		while (newRPos != -1){

			for (x = 0; x < inputString.length(); x++){

			int ind = 0;

			newRPos = inputString.indexOf('R');

			String nextRPep = inputString.substring(startPos, (newRPos+1));
			protString = inputString.substring(newRPos+1, inputString.length());
			rArray[ind] = nextRPep;
			ind++;
			startPos = newRPos+1;
			newRPos = protString.indexOf('R');
			rArray[ind+1] = protString;
			}

			for (index = 0; index < rArray.length; index++){

			newKPos = inputString.indexOf('K');

			while (newKPos != -1){

			for (x = 0; x < rArray.length; x++){

			int ind = 0;

				String rPep = rArray[x];
				*String nextPep = rPep.substring(startPos, (newKPos+1));*
				protString = rPep.substring(newKPos+1, rPep.length());
				kArray[ind] = nextPep;
				ind++;
				startPos = newKPos+1;
				newKPos = protString.indexOf('K');
				kArray[ind+1] = protString;
				System.out.println(kArray);
			}
			}
			}