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Legend_9813

Brahmin_Nambudiri

Legend_9813
Jun 21st, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. inbreed: YES
  10. allsnps: YES
  11. details: YES
  12. ## qpAdm version: 1520
  13. seed: -21085745
  14. inbreed set YES
  15. inbreed set YES
  16. tmp: /tmp/fsx.643
  17.  
  18. left pops:
  19. Brahmin_Nambudiri
  20. Paniya
  21. Indus_medAASI
  22. Xinjiang_Steppe_LBA
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. WSHG
  29. Onge.DG
  30. Turkey_N
  31. Iraq_PPNA
  32. Levant_PPN
  33. CHN_Tarim_EMBA1
  34. Iran_GanjDareh_N
  35. Mongolia_North_N
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 2 dof: 9 chisq: 6.337 tail: 0.705789573 dofdiff: 11 chisqdiff: -6.337 taildiff: 1
  41. B:
  42. scale 1.000 1.000
  43. EHG 1.294 0.938
  44. CHG 0.954 -0.752
  45. WSHG 0.976 0.185
  46. Onge.DG -0.751 0.763
  47. Turkey_N 1.224 0.307
  48. Iraq_PPNA 0.967 -0.755
  49. Levant_PPN 1.053 0.081
  50. CHN_Tarim_EMBA1 0.778 0.204
  51. Iran_GanjDareh_N 0.639 -2.265
  52. Mongolia_North_N -0.442 0.513
  53. Serbia_IronGates_Mesolithic 1.466 1.684
  54. A:
  55. scale 82.946 314.974
  56. Paniya -1.071 1.202
  57. Indus_medAASI 0.062 -0.710
  58. Xinjiang_Steppe_LBA 1.360 1.025
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 6.337 taildiff: 0.705789573
  64. B:
  65. scale 74.885 437.186 58.771
  66. EHG -0.928 -0.150 1.482
  67. CHG -1.217 0.431 0.730
  68. WSHG -0.884 0.114 0.997
  69. Onge.DG 0.902 -1.419 -0.597
  70. Turkey_N -1.118 -0.072 1.237
  71. Iraq_PPNA -1.181 0.857 0.773
  72. Levant_PPN -1.014 0.073 1.028
  73. CHN_Tarim_EMBA1 -0.705 -0.137 0.795
  74. Iran_GanjDareh_N -1.258 2.459 0.199
  75. Mongolia_North_N 0.621 -0.388 -0.278
  76. Serbia_IronGates_Mesolithic -0.961 -1.344 1.728
  77. A:
  78. scale 1.732 1.732 1.732
  79. Paniya 1.732 0.000 0.000
  80. Indus_medAASI 0.000 1.732 0.000
  81. Xinjiang_Steppe_LBA 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.231 0.615 0.154
  85. totmean: 0.231 0.615 0.154
  86. boot mean: 0.231 0.615 0.154
  87. std. errors: 0.033 0.049 0.027
  88.  
  89. error covariance (* 1,000,000)
  90. 1105 -1395 290
  91. -1395 2397 -1002
  92. 290 -1002 712
  93.  
  94.  
  95. summ: Brahmin_Nambudiri 3 0.705790 0.231 0.615 0.154 1105 -1395 290 2397 -1002 ...
  96. 712
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 9 6.337 0.70579 0.231 0.615 0.154
  100. 001 1 10 37.811 4.09333e-05 0.158 0.842 0.000
  101. 010 1 10 185.183 0 0.588 0.000 0.412
  102. 100 1 10 47.233 8.56524e-07 0.000 0.914 0.086
  103. 011 2 11 664.132 0 1.000 0.000 0.000
  104. 101 2 11 57.138 3.13781e-08 0.000 1.000 0.000
  105. 110 2 11 1078.577 0 0.000 0.000 1.000
  106. best pat: 000 0.70579 - -
  107. best pat: 001 4.09333e-05 chi(nested): 31.474 p-value for nested model: 2.02091e-08
  108. best pat: 101 3.13781e-08 chi(nested): 19.327 p-value for nested model: 1.10135e-05
  109.  
  110. coeffs: 0.231 0.615 0.154
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: Paniya EHG -0.012391 -9.709744
  116. details: Indus_medAASI EHG -0.000342 -0.242115
  117. details: Xinjiang_Steppe_LBA EHG 0.025221 19.214932
  118. dscore: EHG f4: 0.000804 Z: 0.641891
  119.  
  120. details: Paniya CHG -0.016251 -10.967323
  121. details: Indus_medAASI CHG 0.000987 0.615661
  122. details: Xinjiang_Steppe_LBA CHG 0.012425 8.153272
  123. dscore: CHG f4: -0.001242 Z: -0.871963
  124.  
  125. details: Paniya WSHG -0.011803 -7.250650
  126. details: Indus_medAASI WSHG 0.000261 0.151357
  127. details: Xinjiang_Steppe_LBA WSHG 0.016961 10.293057
  128. dscore: WSHG f4: 0.000039 Z: 0.025465
  129.  
  130. details: Paniya Onge.DG 0.012045 9.242179
  131. details: Indus_medAASI Onge.DG -0.003247 -2.314009
  132. details: Xinjiang_Steppe_LBA Onge.DG -0.010155 -7.397965
  133. dscore: Onge.DG f4: -0.000771 Z: -0.629405
  134.  
  135. details: Paniya Turkey_N -0.014934 -13.377882
  136. details: Indus_medAASI Turkey_N -0.000164 -0.135996
  137. details: Xinjiang_Steppe_LBA Turkey_N 0.021044 18.101713
  138. dscore: Turkey_N f4: -0.000318 Z: -0.296665
  139.  
  140. details: Paniya Iraq_PPNA -0.015765 -8.790737
  141. details: Indus_medAASI Iraq_PPNA 0.001960 1.045609
  142. details: Xinjiang_Steppe_LBA Iraq_PPNA 0.013145 7.164897
  143. dscore: Iraq_PPNA f4: -0.000421 Z: -0.244705
  144.  
  145. details: Paniya Levant_PPN -0.013540 -9.261672
  146. details: Indus_medAASI Levant_PPN 0.000166 0.106862
  147. details: Xinjiang_Steppe_LBA Levant_PPN 0.017490 11.168060
  148. dscore: Levant_PPN f4: -0.000340 Z: -0.239959
  149.  
  150. details: Paniya CHN_Tarim_EMBA1 -0.009417 -6.595223
  151. details: Indus_medAASI CHN_Tarim_EMBA1 -0.000314 -0.202644
  152. details: Xinjiang_Steppe_LBA CHN_Tarim_EMBA1 0.013531 9.177326
  153. dscore: CHN_Tarim_EMBA1 f4: -0.000290 Z: -0.212644
  154.  
  155. details: Paniya Iran_GanjDareh_N -0.016800 -13.076133
  156. details: Indus_medAASI Iran_GanjDareh_N 0.005624 4.048233
  157. details: Xinjiang_Steppe_LBA Iran_GanjDareh_N 0.003390 2.586301
  158. dscore: Iran_GanjDareh_N f4: 0.000090 Z: 0.072162
  159.  
  160. details: Paniya Mongolia_North_N 0.008298 6.331857
  161. details: Indus_medAASI Mongolia_North_N -0.000887 -0.652620
  162. details: Xinjiang_Steppe_LBA Mongolia_North_N -0.004737 -3.552199
  163. dscore: Mongolia_North_N f4: 0.000646 Z: 0.531371
  164.  
  165. details: Paniya Serbia_IronGates_Mesolithic -0.012839 -10.786792
  166. details: Indus_medAASI Serbia_IronGates_Mesolithic -0.003073 -2.315291
  167. details: Xinjiang_Steppe_LBA Serbia_IronGates_Mesolithic 0.029409 23.022018
  168. dscore: Serbia_IronGates_Mesolithic f4: -0.000334 Z: -0.284596
  169.  
  170. gendstat: Mbuti.DG EHG 0.642
  171. gendstat: Mbuti.DG CHG -0.872
  172. gendstat: Mbuti.DG WSHG 0.025
  173. gendstat: Mbuti.DG Onge.DG -0.629
  174. gendstat: Mbuti.DG Turkey_N -0.297
  175. gendstat: Mbuti.DG Iraq_PPNA -0.245
  176. gendstat: Mbuti.DG Levant_PPN -0.240
  177. gendstat: Mbuti.DG CHN_Tarim_EMBA1 -0.213
  178. gendstat: Mbuti.DG Iran_GanjDareh_N 0.072
  179. gendstat: Mbuti.DG Mongolia_North_N 0.531
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.285
  181. gendstat: EHG CHG -1.650
  182. gendstat: EHG WSHG -0.668
  183. gendstat: EHG Onge.DG -1.217
  184. gendstat: EHG Turkey_N -1.290
  185. gendstat: EHG Iraq_PPNA -0.758
  186. gendstat: EHG Levant_PPN -0.840
  187. gendstat: EHG CHN_Tarim_EMBA1 -1.093
  188. gendstat: EHG Iran_GanjDareh_N -0.610
  189. gendstat: EHG Mongolia_North_N -0.129
  190. gendstat: EHG Serbia_IronGates_Mesolithic -1.393
  191. gendstat: CHG WSHG 0.814
  192. gendstat: CHG Onge.DG 0.309
  193. gendstat: CHG Turkey_N 0.804
  194. gendstat: CHG Iraq_PPNA 0.459
  195. gendstat: CHG Levant_PPN 0.593
  196. gendstat: CHG CHN_Tarim_EMBA1 0.652
  197. gendstat: CHG Iran_GanjDareh_N 1.025
  198. gendstat: CHG Mongolia_North_N 1.281
  199. gendstat: CHG Serbia_IronGates_Mesolithic 0.735
  200. gendstat: WSHG Onge.DG -0.510
  201. gendstat: WSHG Turkey_N -0.260
  202. gendstat: WSHG Iraq_PPNA -0.240
  203. gendstat: WSHG Levant_PPN -0.224
  204. gendstat: WSHG CHN_Tarim_EMBA1 -0.259
  205. gendstat: WSHG Iran_GanjDareh_N 0.033
  206. gendstat: WSHG Mongolia_North_N 0.401
  207. gendstat: WSHG Serbia_IronGates_Mesolithic -0.279
  208. gendstat: Onge.DG Turkey_N 0.375
  209. gendstat: Onge.DG Iraq_PPNA 0.189
  210. gendstat: Onge.DG Levant_PPN 0.276
  211. gendstat: Onge.DG CHN_Tarim_EMBA1 0.346
  212. gendstat: Onge.DG Iran_GanjDareh_N 0.622
  213. gendstat: Onge.DG Mongolia_North_N 1.150
  214. gendstat: Onge.DG Serbia_IronGates_Mesolithic 0.335
  215. gendstat: Turkey_N Iraq_PPNA -0.068
  216. gendstat: Turkey_N Levant_PPN -0.019
  217. gendstat: Turkey_N CHN_Tarim_EMBA1 0.024
  218. gendstat: Turkey_N Iran_GanjDareh_N 0.416
  219. gendstat: Turkey_N Mongolia_North_N 0.814
  220. gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.021
  221. gendstat: Iraq_PPNA Levant_PPN 0.047
  222. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 0.071
  223. gendstat: Iraq_PPNA Iran_GanjDareh_N 0.314
  224. gendstat: Iraq_PPNA Mongolia_North_N 0.589
  225. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic 0.054
  226. gendstat: Levant_PPN CHN_Tarim_EMBA1 0.032
  227. gendstat: Levant_PPN Iran_GanjDareh_N 0.306
  228. gendstat: Levant_PPN Mongolia_North_N 0.629
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic 0.005
  230. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N 0.287
  231. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 0.731
  232. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.037
  233. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.413
  234. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.372
  235. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.788
  236.  
  237. removing /tmp/fsx.643
  238. ##end of qpAdm: 4.055 seconds cpu 1.016 Mbytes in use
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