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misnomer001

parkhai tepehissar

misnomer001
Apr 29th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1870773246
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Turkmenistan_C_Parkhai
  11. Iran_GanjDareh_N
  12. WSHG
  13. Iran_C_TepeHissar
  14.  
  15. right pops:
  16. Mbuti.DG
  17. Russia_Ust_Ishim.DG
  18. Russia_Kostenki14.SG
  19. Russia_MA1_HG.SG
  20. Han.DG
  21. ONG.SG
  22. Papuan.DG
  23. Italy_North_Villabruna_HG
  24. Czech_Vestonice16
  25. Iberia_ElMiron
  26. Ethiopia_4500BP_published.SG
  27. Karitiana.DG
  28. Israel_Natufian
  29. Georgia_Satsurblia.SG
  30. Russia_HG_Karelia
  31.  
  32. 0 Turkmenistan_C_Parkhai 4
  33. 1 Iran_GanjDareh_N 8
  34. 2 WSHG 3
  35. 3 Iran_C_TepeHissar 11
  36. 4 Mbuti.DG 4
  37. 5 Russia_Ust_Ishim.DG 1
  38. 6 Russia_Kostenki14.SG 1
  39. 7 Russia_MA1_HG.SG 1
  40. 8 Han.DG 3
  41. 9 ONG.SG 6
  42. 10 Papuan.DG 15
  43. 11 Italy_North_Villabruna_HG 1
  44. 12 Czech_Vestonice16 1
  45. 13 Iberia_ElMiron 1
  46. 14 Ethiopia_4500BP_published.SG 1
  47. 15 Karitiana.DG 3
  48. 16 Israel_Natufian 6
  49. 17 Georgia_Satsurblia.SG 1
  50. 18 Russia_HG_Karelia 2
  51. jackknife block size: 0.050
  52. snps: 1150505 indivs: 73
  53. number of blocks for block jackknife: 713
  54. ## ncols: 1150505
  55. coverage: Turkmenistan_C_Parkhai 995807
  56. coverage: Iran_GanjDareh_N 1057358
  57. coverage: WSHG 858019
  58. coverage: Iran_C_TepeHissar 981816
  59. coverage: Mbuti.DG 1121438
  60. coverage: Russia_Ust_Ishim.DG 1062044
  61. coverage: Russia_Kostenki14.SG 1048972
  62. coverage: Russia_MA1_HG.SG 805960
  63. coverage: Han.DG 1121416
  64. coverage: ONG.SG 1143397
  65. coverage: Papuan.DG 1121459
  66. coverage: Italy_North_Villabruna_HG 883779
  67. coverage: Czech_Vestonice16 732091
  68. coverage: Iberia_ElMiron 626974
  69. coverage: Ethiopia_4500BP_published.SG 1149598
  70. coverage: Karitiana.DG 1121394
  71. coverage: Israel_Natufian 535079
  72. coverage: Georgia_Satsurblia.SG 801311
  73. coverage: Russia_HG_Karelia 1010733
  74. dof (jackknife): 619.603
  75. numsnps used: 1150505
  76. codimension 1
  77. f4info:
  78. f4rank: 2 dof: 12 chisq: 10.182 tail: 0.599961522 dofdiff: 14 chisqdiff: -10.182 taildiff: 1
  79. B:
  80. scale 1.000 1.000
  81. Russia_Ust_Ishim.DG 0.417 -0.465
  82. Russia_Kostenki14.SG 0.540 0.335
  83. Russia_MA1_HG.SG 1.733 -1.149
  84. Han.DG 0.846 -0.395
  85. ONG.SG 0.537 -0.487
  86. Papuan.DG 0.576 -0.647
  87. Italy_North_Villabruna_HG 0.825 1.377
  88. Czech_Vestonice16 0.585 1.160
  89. Iberia_ElMiron 0.724 0.992
  90. Ethiopia_4500BP_published.SG -0.021 -0.206
  91. Karitiana.DG 1.694 -1.029
  92. Israel_Natufian -0.081 2.189
  93. Georgia_Satsurblia.SG -0.318 0.883
  94. Russia_HG_Karelia 2.162 -0.801
  95. A:
  96. scale 286.470 2749.450
  97. Iran_GanjDareh_N -0.247 -1.453
  98. WSHG 1.714 -0.302
  99. Iran_C_TepeHissar 0.016 0.894
  100.  
  101.  
  102. full rank
  103. f4info:
  104. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 10.182 taildiff: 0.599961522
  105. B:
  106. scale 1056.363 166.001 3016.542
  107. Russia_Ust_Ishim.DG -0.361 0.410 -0.948
  108. Russia_Kostenki14.SG -0.612 0.548 0.755
  109. Russia_MA1_HG.SG -1.082 1.736 -1.232
  110. Han.DG -0.416 0.879 0.093
  111. ONG.SG -0.422 0.539 -0.825
  112. Papuan.DG -0.285 0.588 -0.825
  113. Italy_North_Villabruna_HG -1.695 0.782 1.170
  114. Czech_Vestonice16 -1.450 0.534 0.572
  115. Iberia_ElMiron -1.113 0.717 1.434
  116. Ethiopia_4500BP_published.SG 0.112 -0.017 -0.299
  117. Karitiana.DG -0.775 1.737 -0.324
  118. Israel_Natufian -1.187 -0.116 1.989
  119. Georgia_Satsurblia.SG -0.456 -0.355 0.084
  120. Russia_HG_Karelia -1.857 2.132 -1.318
  121. A:
  122. scale 1.732 1.732 1.732
  123. Iran_GanjDareh_N 1.732 0.000 0.000
  124. WSHG 0.000 1.732 0.000
  125. Iran_C_TepeHissar 0.000 0.000 1.732
  126.  
  127.  
  128. best coefficients: 0.358 0.046 0.597
  129. Jackknife mean: 0.357999212 0.045773621 0.596227167
  130. std. errors: 0.075 0.013 0.077
  131.  
  132. error covariance (* 1,000,000)
  133. 5647 68 -5715
  134. 68 162 -229
  135. -5715 -229 5944
  136.  
  137.  
  138. summ: Turkmenistan_C_Parkhai 3 0.599962 0.358 0.046 0.596 5647 68 -5715 162 -229 ...
  139. 5944
  140.  
  141. fixed pat wt dof chisq tail prob
  142. 000 0 12 10.182 0.599962 0.358 0.046 0.597
  143. 001 1 13 58.943 8.11226e-08 0.932 0.068 0.000
  144. 010 1 13 180.476 0 -1.725 0.000 2.725 infeasible
  145. 100 1 13 31.697 0.00266365 0.000 0.042 0.958
  146. 011 2 14 77.413 8.51566e-11 1.000 0.000 0.000
  147. 101 2 14 1987.049 0 0.000 1.000 0.000
  148. 110 2 14 41.620 0.000142025 0.000 0.000 1.000
  149. best pat: 000 0.599962 - -
  150. best pat: 100 0.00266365 chi(nested): 21.514 p-value for nested model: 3.51191e-06
  151. best pat: 110 0.000142025 chi(nested): 9.923 p-value for nested model: 0.00163237
  152.  
  153. coeffs: 0.358 0.046 0.597
  154.  
  155. ## dscore:: f_4(Base, Fit, Rbase, right2)
  156. ## genstat:: f_4(Base, Fit, right1, right2)
  157.  
  158. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.000342 -1.239464
  159. details: WSHG Russia_Ust_Ishim.DG 0.002470 6.570468
  160. details: Iran_C_TepeHissar Russia_Ust_Ishim.DG -0.000314 -1.318684
  161. dscore: Russia_Ust_Ishim.DG f4: -0.000197 Z: -0.886786
  162.  
  163. details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.000579 -1.961855
  164. details: WSHG Russia_Kostenki14.SG 0.003301 8.475618
  165. details: Iran_C_TepeHissar Russia_Kostenki14.SG 0.000250 0.975570
  166. dscore: Russia_Kostenki14.SG f4: 0.000094 Z: 0.395667
  167.  
  168. details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.001024 -3.499237
  169. details: WSHG Russia_MA1_HG.SG 0.010456 25.442756
  170. details: Iran_C_TepeHissar Russia_MA1_HG.SG -0.000409 -1.652793
  171. dscore: Russia_MA1_HG.SG f4: -0.000131 Z: -0.566130
  172.  
  173. details: Iran_GanjDareh_N Han.DG -0.000394 -1.587959
  174. details: WSHG Han.DG 0.005293 15.698392
  175. details: Iran_C_TepeHissar Han.DG 0.000031 0.154935
  176. dscore: Han.DG f4: 0.000120 Z: 0.626295
  177.  
  178. details: Iran_GanjDareh_N ONG.SG -0.000399 -1.591824
  179. details: WSHG ONG.SG 0.003249 9.945634
  180. details: Iran_C_TepeHissar ONG.SG -0.000273 -1.329540
  181. dscore: ONG.SG f4: -0.000157 Z: -0.806048
  182.  
  183. details: Iran_GanjDareh_N Papuan.DG -0.000270 -1.099699
  184. details: WSHG Papuan.DG 0.003541 10.269211
  185. details: Iran_C_TepeHissar Papuan.DG -0.000273 -1.331101
  186. dscore: Papuan.DG f4: -0.000097 Z: -0.508042
  187.  
  188. details: Iran_GanjDareh_N Italy_North_Villabruna_HG -0.001604 -5.325135
  189. details: WSHG Italy_North_Villabruna_HG 0.004708 11.265007
  190. details: Iran_C_TepeHissar Italy_North_Villabruna_HG 0.000388 1.502646
  191. dscore: Italy_North_Villabruna_HG f4: -0.000127 Z: -0.531922
  192.  
  193. details: Iran_GanjDareh_N Czech_Vestonice16 -0.001373 -4.851258
  194. details: WSHG Czech_Vestonice16 0.003218 8.583879
  195. details: Iran_C_TepeHissar Czech_Vestonice16 0.000189 0.734585
  196. dscore: Czech_Vestonice16 f4: -0.000230 Z: -0.985088
  197.  
  198. details: Iran_GanjDareh_N Iberia_ElMiron -0.001054 -4.024712
  199. details: WSHG Iberia_ElMiron 0.004317 11.546583
  200. details: Iran_C_TepeHissar Iberia_ElMiron 0.000475 2.071904
  201. dscore: Iberia_ElMiron f4: 0.000105 Z: 0.493070
  202.  
  203. details: Iran_GanjDareh_N Ethiopia_4500BP_published.SG 0.000106 0.506818
  204. details: WSHG Ethiopia_4500BP_published.SG -0.000102 -0.411823
  205. details: Iran_C_TepeHissar Ethiopia_4500BP_published.SG -0.000099 -0.533932
  206. dscore: Ethiopia_4500BP_published.SG f4: -0.000026 Z: -0.151683
  207.  
  208. details: Iran_GanjDareh_N Karitiana.DG -0.000733 -2.637581
  209. details: WSHG Karitiana.DG 0.010462 27.431224
  210. details: Iran_C_TepeHissar Karitiana.DG -0.000107 -0.462318
  211. dscore: Karitiana.DG f4: 0.000153 Z: 0.699562
  212.  
  213. details: Iran_GanjDareh_N Israel_Natufian -0.001124 -5.328795
  214. details: WSHG Israel_Natufian -0.000700 -2.526215
  215. details: Iran_C_TepeHissar Israel_Natufian 0.000659 3.213623
  216. dscore: Israel_Natufian f4: -0.000041 Z: -0.224128
  217.  
  218. details: Iran_GanjDareh_N Georgia_Satsurblia.SG -0.000431 -1.554830
  219. details: WSHG Georgia_Satsurblia.SG -0.002138 -5.791681
  220. details: Iran_C_TepeHissar Georgia_Satsurblia.SG 0.000028 0.115896
  221. dscore: Georgia_Satsurblia.SG f4: -0.000235 Z: -1.061146
  222.  
  223. details: Iran_GanjDareh_N Russia_HG_Karelia -0.001758 -5.756818
  224. details: WSHG Russia_HG_Karelia 0.012843 31.466993
  225. details: Iran_C_TepeHissar Russia_HG_Karelia -0.000437 -1.671789
  226. dscore: Russia_HG_Karelia f4: -0.000301 Z: -1.250664
  227.  
  228. gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.887
  229. gendstat: Mbuti.DG Russia_Kostenki14.SG 0.396
  230. gendstat: Mbuti.DG Russia_MA1_HG.SG -0.566
  231. gendstat: Mbuti.DG Han.DG 0.626
  232. gendstat: Mbuti.DG ONG.SG -0.806
  233. gendstat: Mbuti.DG Papuan.DG -0.508
  234. gendstat: Mbuti.DG Italy_North_Villabruna_HG -0.532
  235. gendstat: Mbuti.DG Czech_Vestonice16 -0.985
  236. gendstat: Mbuti.DG Iberia_ElMiron 0.493
  237. gendstat: Mbuti.DG Ethiopia_4500BP_published.SG -0.152
  238. gendstat: Mbuti.DG Karitiana.DG 0.700
  239. gendstat: Mbuti.DG Israel_Natufian -0.224
  240. gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.061
  241. gendstat: Mbuti.DG Russia_HG_Karelia -1.251
  242. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 1.108
  243. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.245
  244. gendstat: Russia_Ust_Ishim.DG Han.DG 1.353
  245. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.175
  246. gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.420
  247. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG 0.253
  248. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -0.124
  249. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron 1.196
  250. gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG 0.679
  251. gendstat: Russia_Ust_Ishim.DG Karitiana.DG 1.360
  252. gendstat: Russia_Ust_Ishim.DG Israel_Natufian 0.629
  253. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.142
  254. gendstat: Russia_Ust_Ishim.DG Russia_HG_Karelia -0.384
  255. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.825
  256. gendstat: Russia_Kostenki14.SG Han.DG 0.110
  257. gendstat: Russia_Kostenki14.SG ONG.SG -1.021
  258. gendstat: Russia_Kostenki14.SG Papuan.DG -0.802
  259. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -0.786
  260. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.204
  261. gendstat: Russia_Kostenki14.SG Iberia_ElMiron 0.044
  262. gendstat: Russia_Kostenki14.SG Ethiopia_4500BP_published.SG -0.434
  263. gendstat: Russia_Kostenki14.SG Karitiana.DG 0.234
  264. gendstat: Russia_Kostenki14.SG Israel_Natufian -0.523
  265. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -1.177
  266. gendstat: Russia_Kostenki14.SG Russia_HG_Karelia -1.465
  267. gendstat: Russia_MA1_HG.SG Han.DG 1.081
  268. gendstat: Russia_MA1_HG.SG ONG.SG -0.110
  269. gendstat: Russia_MA1_HG.SG Papuan.DG 0.143
  270. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 0.016
  271. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -0.355
  272. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 0.903
  273. gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 0.396
  274. gendstat: Russia_MA1_HG.SG Karitiana.DG 1.197
  275. gendstat: Russia_MA1_HG.SG Israel_Natufian 0.365
  276. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.392
  277. gendstat: Russia_MA1_HG.SG Russia_HG_Karelia -0.707
  278. gendstat: Han.DG ONG.SG -1.606
  279. gendstat: Han.DG Papuan.DG -1.196
  280. gendstat: Han.DG Italy_North_Villabruna_HG -1.025
  281. gendstat: Han.DG Czech_Vestonice16 -1.422
  282. gendstat: Han.DG Iberia_ElMiron -0.066
  283. gendstat: Han.DG Ethiopia_4500BP_published.SG -0.642
  284. gendstat: Han.DG Karitiana.DG 0.180
  285. gendstat: Han.DG Israel_Natufian -0.725
  286. gendstat: Han.DG Georgia_Satsurblia.SG -1.483
  287. gendstat: Han.DG Russia_HG_Karelia -1.816
  288. gendstat: ONG.SG Papuan.DG 0.341
  289. gendstat: ONG.SG Italy_North_Villabruna_HG 0.122
  290. gendstat: ONG.SG Czech_Vestonice16 -0.294
  291. gendstat: ONG.SG Iberia_ElMiron 1.145
  292. gendstat: ONG.SG Ethiopia_4500BP_published.SG 0.591
  293. gendstat: ONG.SG Karitiana.DG 1.475
  294. gendstat: ONG.SG Israel_Natufian 0.530
  295. gendstat: ONG.SG Georgia_Satsurblia.SG -0.328
  296. gendstat: ONG.SG Russia_HG_Karelia -0.614
  297. gendstat: Papuan.DG Italy_North_Villabruna_HG -0.117
  298. gendstat: Papuan.DG Czech_Vestonice16 -0.545
  299. gendstat: Papuan.DG Iberia_ElMiron 0.869
  300. gendstat: Papuan.DG Ethiopia_4500BP_published.SG 0.322
  301. gendstat: Papuan.DG Karitiana.DG 1.205
  302. gendstat: Papuan.DG Israel_Natufian 0.255
  303. gendstat: Papuan.DG Georgia_Satsurblia.SG -0.576
  304. gendstat: Papuan.DG Russia_HG_Karelia -0.868
  305. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -0.393
  306. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.935
  307. gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG 0.372
  308. gendstat: Italy_North_Villabruna_HG Karitiana.DG 1.083
  309. gendstat: Italy_North_Villabruna_HG Israel_Natufian 0.339
  310. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG -0.383
  311. gendstat: Italy_North_Villabruna_HG Russia_HG_Karelia -0.683
  312. gendstat: Czech_Vestonice16 Iberia_ElMiron 1.282
  313. gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG 0.765
  314. gendstat: Czech_Vestonice16 Karitiana.DG 1.463
  315. gendstat: Czech_Vestonice16 Israel_Natufian 0.731
  316. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -0.018
  317. gendstat: Czech_Vestonice16 Russia_HG_Karelia -0.257
  318. gendstat: Iberia_ElMiron Ethiopia_4500BP_published.SG -0.524
  319. gendstat: Iberia_ElMiron Karitiana.DG 0.201
  320. gendstat: Iberia_ElMiron Israel_Natufian -0.605
  321. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -1.322
  322. gendstat: Iberia_ElMiron Russia_HG_Karelia -1.574
  323. gendstat: Ethiopia_4500BP_published.SG Karitiana.DG 0.717
  324. gendstat: Ethiopia_4500BP_published.SG Israel_Natufian -0.064
  325. gendstat: Ethiopia_4500BP_published.SG Georgia_Satsurblia.SG -0.805
  326. gendstat: Ethiopia_4500BP_published.SG Russia_HG_Karelia -1.004
  327. gendstat: Karitiana.DG Israel_Natufian -0.801
  328. gendstat: Karitiana.DG Georgia_Satsurblia.SG -1.514
  329. gendstat: Karitiana.DG Russia_HG_Karelia -1.917
  330. gendstat: Israel_Natufian Georgia_Satsurblia.SG -0.787
  331. gendstat: Israel_Natufian Russia_HG_Karelia -1.044
  332. gendstat: Georgia_Satsurblia.SG Russia_HG_Karelia -0.236
  333.  
  334. ##end of qpAdm: 395.534 seconds cpu 1479.000 Mbytes in use
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