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Legend_9813

Khvalynsk_EHG+CHG_Kotias w/Sarazm in right

Legend_9813
Jan 22nd, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Steppe_Eneolithic.ind
  5. snpname: Steppe_Eneolithic.snp
  6. genotypename: Steppe_Eneolithic.geno
  7. popleft: left
  8. popright: right
  9. inbreed: NO
  10. allsnps: YES
  11. ## qpAdm version: 1520
  12. seed: 56345990
  13. inbreed set NO
  14. inbreed set NO
  15. tmp: /tmp/fsx.1702
  16.  
  17. left pops:
  18. RUS_Khvalynsk_EN
  19. EHG_highANE
  20. CHG_Kotias
  21.  
  22. right pops:
  23. Mbuti.DG
  24. WHG
  25. Turkey_N
  26. Levant_PPN
  27. EHG_Mesolithic
  28. CHG_Satsurblia
  29. IRQ_Nemrik9_PPN
  30. Iran_GanjDareh_N
  31. Russia_Tyumen_HG
  32. Tajikistan_C_Sarazm
  33. Russia_Shamanka_EN
  34. Turkey_Boncuklu_PPN
  35. Russia_AfontovaGora3
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 1 dof: 12 chisq: 16.998 tail: 0.149660462 dofdiff: 14 chisqdiff: -16.998 taildiff: 1
  41. B:
  42. scale 1.000
  43. WHG 0.900
  44. Turkey_N -0.053
  45. Levant_PPN 0.005
  46. EHG_Mesolithic 1.778
  47. CHG_Satsurblia -1.310
  48. IRQ_Nemrik9_PPN -0.383
  49. Iran_GanjDareh_N -0.382
  50. Russia_Tyumen_HG 1.668
  51. Tajikistan_C_Sarazm -0.057
  52. Russia_Shamanka_EN 0.424
  53. Turkey_Boncuklu_PPN -0.020
  54. Russia_AfontovaGora3 1.699
  55. Serbia_IronGates_Mesolithic 1.079
  56. A:
  57. scale 51.955
  58. EHG_highANE 0.322
  59. CHG_Kotias -1.377
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 16.998 taildiff: 0.149660462
  65. B:
  66. scale 173.521 36.733
  67. WHG 0.423 -0.988
  68. Turkey_N -0.413 -0.033
  69. Levant_PPN -0.141 -0.042
  70. EHG_Mesolithic 2.056 -1.722
  71. CHG_Satsurblia -1.227 1.312
  72. IRQ_Nemrik9_PPN -0.596 0.309
  73. Iran_GanjDareh_N -0.623 0.323
  74. Russia_Tyumen_HG 1.549 -1.667
  75. Tajikistan_C_Sarazm -0.423 -0.028
  76. Russia_Shamanka_EN 0.298 -0.453
  77. Turkey_Boncuklu_PPN -0.297 -0.054
  78. Russia_AfontovaGora3 1.648 -1.702
  79. Serbia_IronGates_Mesolithic 0.825 -1.120
  80. A:
  81. scale 1.414 1.414
  82. EHG_highANE 1.414 0.000
  83. CHG_Kotias 0.000 1.414
  84.  
  85.  
  86. best coefficients: 0.810 0.190
  87. totmean: 0.810 0.190
  88. boot mean: 0.810 0.190
  89. std. errors: 0.014 0.014
  90.  
  91. error covariance (* 1,000,000)
  92. 190 -190
  93. -190 190
  94.  
  95.  
  96. summ: RUS_Khvalynsk_EN 2 0.149660 0.810 0.190 190 -190 190
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 00 0 12 16.998 0.14966 0.810 0.190
  100. 01 1 13 202.000 0 1.000 0.000
  101. 10 1 13 1751.701 0 0.000 1.000
  102. best pat: 00 0.14966 - -
  103. best pat: 01 5.30773e-36 chi(nested): 185.001 p-value for nested model: 3.92171e-42
  104.  
  105. coeffs: 0.810 0.190
  106.  
  107. ## dscore:: f_4(Base, Fit, Rbase, right2)
  108. ## genstat:: f_4(Base, Fit, right1, right2)
  109.  
  110. details: EHG_highANE WHG 0.002441 1.797075
  111. details: CHG_Kotias WHG -0.026889 -13.957856
  112. dscore: WHG f4: -0.003119 Z: -2.427579
  113.  
  114. details: EHG_highANE Turkey_N -0.002378 -2.604393
  115. details: CHG_Kotias Turkey_N -0.000886 -0.704120
  116. dscore: Turkey_N f4: -0.002095 Z: -2.433108
  117.  
  118. details: EHG_highANE Levant_PPN -0.000812 -0.663439
  119. details: CHG_Kotias Levant_PPN -0.001156 -0.729449
  120. dscore: Levant_PPN f4: -0.000877 Z: -0.754581
  121.  
  122. details: EHG_highANE EHG_Mesolithic 0.011847 8.669668
  123. details: CHG_Kotias EHG_Mesolithic -0.046867 -25.291606
  124. dscore: EHG_Mesolithic f4: 0.000717 Z: 0.547739
  125.  
  126. details: EHG_highANE CHG_Satsurblia -0.007073 -4.523652
  127. details: CHG_Kotias CHG_Satsurblia 0.035719 14.166441
  128. dscore: CHG_Satsurblia f4: 0.001039 Z: 0.682436
  129.  
  130. details: EHG_highANE IRQ_Nemrik9_PPN -0.003435 -2.011496
  131. details: CHG_Kotias IRQ_Nemrik9_PPN 0.008413 3.833961
  132. dscore: IRQ_Nemrik9_PPN f4: -0.001189 Z: -0.732151
  133.  
  134. details: EHG_highANE Iran_GanjDareh_N -0.003592 -3.601063
  135. details: CHG_Kotias Iran_GanjDareh_N 0.008805 6.327392
  136. dscore: Iran_GanjDareh_N f4: -0.001242 Z: -1.317637
  137.  
  138. details: EHG_highANE Russia_Tyumen_HG 0.008929 5.477223
  139. details: CHG_Kotias Russia_Tyumen_HG -0.045376 -21.166329
  140. dscore: Russia_Tyumen_HG f4: -0.001365 Z: -0.878027
  141.  
  142. details: EHG_highANE Tajikistan_C_Sarazm -0.002440 -2.005370
  143. details: CHG_Kotias Tajikistan_C_Sarazm -0.000767 -0.424328
  144. dscore: Tajikistan_C_Sarazm f4: -0.002123 Z: -1.831268
  145.  
  146. details: EHG_highANE Russia_Shamanka_EN 0.001717 1.649203
  147. details: CHG_Kotias Russia_Shamanka_EN -0.012341 -8.385536
  148. dscore: Russia_Shamanka_EN f4: -0.000948 Z: -0.955537
  149.  
  150. details: EHG_highANE Turkey_Boncuklu_PPN -0.001710 -1.579895
  151. details: CHG_Kotias Turkey_Boncuklu_PPN -0.001475 -0.949752
  152. dscore: Turkey_Boncuklu_PPN f4: -0.001666 Z: -1.595744
  153.  
  154. details: EHG_highANE Russia_AfontovaGora3 0.009499 4.459512
  155. details: CHG_Kotias Russia_AfontovaGora3 -0.046322 -17.769876
  156. dscore: Russia_AfontovaGora3 f4: -0.001083 Z: -0.535560
  157.  
  158. details: EHG_highANE Serbia_IronGates_Mesolithic 0.004756 4.369569
  159. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.030478 -19.679520
  160. dscore: Serbia_IronGates_Mesolithic f4: -0.001923 Z: -1.845627
  161.  
  162. gendstat: Mbuti.DG WHG -2.428
  163. gendstat: Mbuti.DG Turkey_N -2.433
  164. gendstat: Mbuti.DG Levant_PPN -0.755
  165. gendstat: Mbuti.DG EHG_Mesolithic 0.548
  166. gendstat: Mbuti.DG CHG_Satsurblia 0.682
  167. gendstat: Mbuti.DG IRQ_Nemrik9_PPN -0.732
  168. gendstat: Mbuti.DG Iran_GanjDareh_N -1.318
  169. gendstat: Mbuti.DG Russia_Tyumen_HG -0.878
  170. gendstat: Mbuti.DG Tajikistan_C_Sarazm -1.831
  171. gendstat: Mbuti.DG Russia_Shamanka_EN -0.956
  172. gendstat: Mbuti.DG Turkey_Boncuklu_PPN -1.596
  173. gendstat: Mbuti.DG Russia_AfontovaGora3 -0.536
  174. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.846
  175. gendstat: WHG Turkey_N 0.957
  176. gendstat: WHG Levant_PPN 1.680
  177. gendstat: WHG EHG_Mesolithic 2.712
  178. gendstat: WHG CHG_Satsurblia 2.331
  179. gendstat: WHG IRQ_Nemrik9_PPN 1.115
  180. gendstat: WHG Iran_GanjDareh_N 1.478
  181. gendstat: WHG Russia_Tyumen_HG 0.990
  182. gendstat: WHG Tajikistan_C_Sarazm 0.697
  183. gendstat: WHG Russia_Shamanka_EN 1.723
  184. gendstat: WHG Turkey_Boncuklu_PPN 1.200
  185. gendstat: WHG Russia_AfontovaGora3 0.956
  186. gendstat: WHG Serbia_IronGates_Mesolithic 1.471
  187. gendstat: Turkey_N Levant_PPN 1.379
  188. gendstat: Turkey_N EHG_Mesolithic 2.297
  189. gendstat: Turkey_N CHG_Satsurblia 2.137
  190. gendstat: Turkey_N IRQ_Nemrik9_PPN 0.629
  191. gendstat: Turkey_N Iran_GanjDareh_N 1.056
  192. gendstat: Turkey_N Russia_Tyumen_HG 0.474
  193. gendstat: Turkey_N Tajikistan_C_Sarazm -0.027
  194. gendstat: Turkey_N Russia_Shamanka_EN 1.308
  195. gendstat: Turkey_N Turkey_Boncuklu_PPN 0.597
  196. gendstat: Turkey_N Russia_AfontovaGora3 0.514
  197. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.220
  198. gendstat: Levant_PPN EHG_Mesolithic 1.122
  199. gendstat: Levant_PPN CHG_Satsurblia 1.184
  200. gendstat: Levant_PPN IRQ_Nemrik9_PPN -0.187
  201. gendstat: Levant_PPN Iran_GanjDareh_N -0.332
  202. gendstat: Levant_PPN Russia_Tyumen_HG -0.280
  203. gendstat: Levant_PPN Tajikistan_C_Sarazm -0.952
  204. gendstat: Levant_PPN Russia_Shamanka_EN -0.059
  205. gendstat: Levant_PPN Turkey_Boncuklu_PPN -0.713
  206. gendstat: Levant_PPN Russia_AfontovaGora3 -0.097
  207. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.921
  208. gendstat: EHG_Mesolithic CHG_Satsurblia 0.176
  209. gendstat: EHG_Mesolithic IRQ_Nemrik9_PPN -1.016
  210. gendstat: EHG_Mesolithic Iran_GanjDareh_N -1.451
  211. gendstat: EHG_Mesolithic Russia_Tyumen_HG -1.288
  212. gendstat: EHG_Mesolithic Tajikistan_C_Sarazm -1.835
  213. gendstat: EHG_Mesolithic Russia_Shamanka_EN -1.239
  214. gendstat: EHG_Mesolithic Turkey_Boncuklu_PPN -1.774
  215. gendstat: EHG_Mesolithic Russia_AfontovaGora3 -0.912
  216. gendstat: EHG_Mesolithic Serbia_IronGates_Mesolithic -2.235
  217. gendstat: CHG_Satsurblia IRQ_Nemrik9_PPN -1.131
  218. gendstat: CHG_Satsurblia Iran_GanjDareh_N -1.518
  219. gendstat: CHG_Satsurblia Russia_Tyumen_HG -1.191
  220. gendstat: CHG_Satsurblia Tajikistan_C_Sarazm -1.954
  221. gendstat: CHG_Satsurblia Russia_Shamanka_EN -1.255
  222. gendstat: CHG_Satsurblia Turkey_Boncuklu_PPN -1.732
  223. gendstat: CHG_Satsurblia Russia_AfontovaGora3 -0.920
  224. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic -1.828
  225. gendstat: IRQ_Nemrik9_PPN Iran_GanjDareh_N -0.034
  226. gendstat: IRQ_Nemrik9_PPN Russia_Tyumen_HG -0.082
  227. gendstat: IRQ_Nemrik9_PPN Tajikistan_C_Sarazm -0.564
  228. gendstat: IRQ_Nemrik9_PPN Russia_Shamanka_EN 0.149
  229. gendstat: IRQ_Nemrik9_PPN Turkey_Boncuklu_PPN -0.303
  230. gendstat: IRQ_Nemrik9_PPN Russia_AfontovaGora3 0.044
  231. gendstat: IRQ_Nemrik9_PPN Serbia_IronGates_Mesolithic -0.469
  232. gendstat: Iran_GanjDareh_N Russia_Tyumen_HG -0.077
  233. gendstat: Iran_GanjDareh_N Tajikistan_C_Sarazm -0.829
  234. gendstat: Iran_GanjDareh_N Russia_Shamanka_EN 0.287
  235. gendstat: Iran_GanjDareh_N Turkey_Boncuklu_PPN -0.409
  236. gendstat: Iran_GanjDareh_N Russia_AfontovaGora3 0.080
  237. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.660
  238. gendstat: Russia_Tyumen_HG Tajikistan_C_Sarazm -0.449
  239. gendstat: Russia_Tyumen_HG Russia_Shamanka_EN 0.279
  240. gendstat: Russia_Tyumen_HG Turkey_Boncuklu_PPN -0.174
  241. gendstat: Russia_Tyumen_HG Russia_AfontovaGora3 0.137
  242. gendstat: Russia_Tyumen_HG Serbia_IronGates_Mesolithic -0.354
  243. gendstat: Tajikistan_C_Sarazm Russia_Shamanka_EN 1.030
  244. gendstat: Tajikistan_C_Sarazm Turkey_Boncuklu_PPN 0.375
  245. gendstat: Tajikistan_C_Sarazm Russia_AfontovaGora3 0.521
  246. gendstat: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic 0.162
  247. gendstat: Russia_Shamanka_EN Turkey_Boncuklu_PPN -0.665
  248. gendstat: Russia_Shamanka_EN Russia_AfontovaGora3 -0.069
  249. gendstat: Russia_Shamanka_EN Serbia_IronGates_Mesolithic -0.930
  250. gendstat: Turkey_Boncuklu_PPN Russia_AfontovaGora3 0.284
  251. gendstat: Turkey_Boncuklu_PPN Serbia_IronGates_Mesolithic -0.258
  252. gendstat: Russia_AfontovaGora3 Serbia_IronGates_Mesolithic -0.431
  253.  
  254. removing /tmp/fsx.1702
  255. ##end of qpAdm: 2.642 seconds cpu 0.774 Mbytes in use
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