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misnomer001

swat_nosteppe = ivcp1 + bmac

misnomer001
Aug 16th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush1
  11. S1X: newpush1
  12. indivname: newpush1.ind
  13. snpname: newpush1.snp
  14. genotypename: newpush1.geno
  15. ## qpAdm version: 1520
  16. seed: 1375154997
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.28540
  20.  
  21. left pops:
  22. Swat_nosteppe
  23. IVCp1
  24. Uzbekistan_Dzharkutan_BA_1
  25.  
  26. right pops:
  27. Mbuti.DG
  28. CHG
  29. EHG
  30. China_YR_MN
  31. Turkey_Boncuklu_N
  32. Russia_Shamanka_Eneolithic.SG
  33. WSHG
  34. Turkey_N
  35. PPN
  36. Serbia_IronGates_Mesolithic
  37. Iran_GanjDareh_N
  38. ONG.SG
  39. Russia_MLBA_Sintashta
  40. Tarim_EMBA1
  41. CentralSteppeMLBA
  42.  
  43. codimension 1
  44. f4info:
  45. f4rank: 1 dof: 13 chisq: 21.344 tail: 0.0664025012 dofdiff: 15 chisqdiff: -21.344 taildiff: 1
  46. B:
  47. scale 1.000
  48. CHG 1.297
  49. EHG 0.661
  50. China_YR_MN -1.017
  51. Turkey_Boncuklu_N 1.054
  52. Russia_Shamanka_Eneolithic.SG -0.849
  53. WSHG 0.316
  54. Turkey_N 1.271
  55. PPN 1.303
  56. Serbia_IronGates_Mesolithic 0.777
  57. Iran_GanjDareh_N 1.378
  58. ONG.SG -1.055
  59. Russia_MLBA_Sintashta 1.013
  60. Tarim_EMBA1 0.211
  61. CentralSteppeMLBA 0.956
  62. A:
  63. scale 151.989
  64. IVCp1 -0.363
  65. Uzbekistan_Dzharkutan_BA_1 1.367
  66.  
  67.  
  68. full rank
  69. f4info:
  70. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 21.344 taildiff: 0.0664025012
  71. B:
  72. scale 269.889 111.200
  73. CHG -0.734 1.357
  74. EHG -1.205 0.605
  75. China_YR_MN -0.036 -1.061
  76. Turkey_Boncuklu_N -1.025 1.064
  77. Russia_Shamanka_Eneolithic.SG 0.052 -0.864
  78. WSHG -0.870 0.297
  79. Turkey_N -1.296 1.258
  80. PPN -1.239 1.292
  81. Serbia_IronGates_Mesolithic -1.317 0.717
  82. Iran_GanjDareh_N -0.989 1.420
  83. ONG.SG 0.750 -1.008
  84. Russia_MLBA_Sintashta -1.217 0.992
  85. Tarim_EMBA1 -0.918 0.170
  86. CentralSteppeMLBA -1.177 0.941
  87. A:
  88. scale 1.414 1.414
  89. IVCp1 1.414 0.000
  90. Uzbekistan_Dzharkutan_BA_1 0.000 1.414
  91.  
  92.  
  93. best coefficients: 0.790 0.210
  94. totmean: 0.790 0.210
  95. boot mean: 0.791 0.209
  96. std. errors: 0.027 0.027
  97.  
  98. error covariance (* 1,000,000)
  99. 738 -738
  100. -738 738
  101.  
  102.  
  103. summ: Swat_nosteppe 2 0.066403 0.791 0.209 738 -738 738
  104.  
  105. fixed pat wt dof chisq tail prob
  106. 00 0 13 21.344 0.0664025 0.790 0.210
  107. 01 1 14 63.476 2.85655e-08 1.000 0.000
  108. 10 1 14 1348.904 0 0.000 1.000
  109. best pat: 00 0.0664025 - -
  110. best pat: 01 2.85655e-08 chi(nested): 42.133 p-value for nested model: 8.52846e-11
  111.  
  112. coeffs: 0.790 0.210
  113.  
  114. ## dscore:: f_4(Base, Fit, Rbase, right2)
  115. ## genstat:: f_4(Base, Fit, right1, right2)
  116.  
  117. details: IVCp1 CHG -0.002718 -2.255531
  118. details: Uzbekistan_Dzharkutan_BA_1 CHG 0.012206 13.628051
  119. dscore: CHG f4: 0.000414 Z: 0.404637
  120.  
  121. details: IVCp1 EHG -0.004463 -3.644278
  122. details: Uzbekistan_Dzharkutan_BA_1 EHG 0.005442 6.461773
  123. dscore: EHG f4: -0.002385 Z: -2.314887
  124.  
  125. details: IVCp1 China_YR_MN -0.000132 -0.113594
  126. details: Uzbekistan_Dzharkutan_BA_1 China_YR_MN -0.009538 -12.024761
  127. dscore: China_YR_MN f4: -0.002106 Z: -2.166672
  128.  
  129. details: IVCp1 Turkey_Boncuklu_N -0.003796 -3.257410
  130. details: Uzbekistan_Dzharkutan_BA_1 Turkey_Boncuklu_N 0.009572 12.325681
  131. dscore: Turkey_Boncuklu_N f4: -0.000991 Z: -1.014551
  132.  
  133. details: IVCp1 Russia_Shamanka_Eneolithic.SG 0.000193 0.192568
  134. details: Uzbekistan_Dzharkutan_BA_1 Russia_Shamanka_Eneolithic.SG -0.007770 -10.107923
  135. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.001478 Z: -1.757146
  136.  
  137. details: IVCp1 WSHG -0.003225 -2.519548
  138. details: Uzbekistan_Dzharkutan_BA_1 WSHG 0.002670 3.009717
  139. dscore: WSHG f4: -0.001988 Z: -1.855608
  140.  
  141. details: IVCp1 Turkey_N -0.004802 -4.874791
  142. details: Uzbekistan_Dzharkutan_BA_1 Turkey_N 0.011309 17.276504
  143. dscore: Turkey_N f4: -0.001421 Z: -1.733527
  144.  
  145. details: IVCp1 PPN -0.004592 -3.594564
  146. details: Uzbekistan_Dzharkutan_BA_1 PPN 0.011623 14.056953
  147. dscore: PPN f4: -0.001190 Z: -1.115741
  148.  
  149. details: IVCp1 Serbia_IronGates_Mesolithic -0.004879 -4.436974
  150. details: Uzbekistan_Dzharkutan_BA_1 Serbia_IronGates_Mesolithic 0.006451 9.002780
  151. dscore: Serbia_IronGates_Mesolithic f4: -0.002502 Z: -2.724778
  152.  
  153. details: IVCp1 Iran_GanjDareh_N -0.003663 -3.379260
  154. details: Uzbekistan_Dzharkutan_BA_1 Iran_GanjDareh_N 0.012770 17.054741
  155. dscore: Iran_GanjDareh_N f4: -0.000215 Z: -0.234723
  156.  
  157. details: IVCp1 ONG.SG 0.002780 2.516572
  158. details: Uzbekistan_Dzharkutan_BA_1 ONG.SG -0.009066 -12.108180
  159. dscore: ONG.SG f4: 0.000294 Z: 0.317080
  160.  
  161. details: IVCp1 Russia_MLBA_Sintashta -0.004511 -4.635086
  162. details: Uzbekistan_Dzharkutan_BA_1 Russia_MLBA_Sintashta 0.008920 14.155540
  163. dscore: Russia_MLBA_Sintashta f4: -0.001693 Z: -2.075859
  164.  
  165. details: IVCp1 Tarim_EMBA1 -0.003401 -2.725020
  166. details: Uzbekistan_Dzharkutan_BA_1 Tarim_EMBA1 0.001532 1.906075
  167. dscore: Tarim_EMBA1 f4: -0.002366 Z: -2.290403
  168.  
  169. details: IVCp1 CentralSteppeMLBA -0.004361 -4.654960
  170. details: Uzbekistan_Dzharkutan_BA_1 CentralSteppeMLBA 0.008466 13.384157
  171. dscore: CentralSteppeMLBA f4: -0.001670 Z: -2.141607
  172.  
  173. gendstat: Mbuti.DG CHG 0.405
  174. gendstat: Mbuti.DG EHG -2.315
  175. gendstat: Mbuti.DG China_YR_MN -2.167
  176. gendstat: Mbuti.DG Turkey_Boncuklu_N -1.015
  177. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -1.757
  178. gendstat: Mbuti.DG WSHG -1.856
  179. gendstat: Mbuti.DG Turkey_N -1.734
  180. gendstat: Mbuti.DG PPN -1.116
  181. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -2.725
  182. gendstat: Mbuti.DG Iran_GanjDareh_N -0.235
  183. gendstat: Mbuti.DG ONG.SG 0.317
  184. gendstat: Mbuti.DG Russia_MLBA_Sintashta -2.076
  185. gendstat: Mbuti.DG Tarim_EMBA1 -2.290
  186. gendstat: Mbuti.DG CentralSteppeMLBA -2.142
  187. gendstat: CHG EHG -2.505
  188. gendstat: CHG China_YR_MN -2.075
  189. gendstat: CHG Turkey_Boncuklu_N -1.408
  190. gendstat: CHG Russia_Shamanka_Eneolithic.SG -1.797
  191. gendstat: CHG WSHG -2.096
  192. gendstat: CHG Turkey_N -1.977
  193. gendstat: CHG PPN -1.347
  194. gendstat: CHG Serbia_IronGates_Mesolithic -2.974
  195. gendstat: CHG Iran_GanjDareh_N -0.669
  196. gendstat: CHG ONG.SG -0.102
  197. gendstat: CHG Russia_MLBA_Sintashta -2.347
  198. gendstat: CHG Tarim_EMBA1 -2.518
  199. gendstat: CHG CentralSteppeMLBA -2.375
  200. gendstat: EHG China_YR_MN 0.253
  201. gendstat: EHG Turkey_Boncuklu_N 1.439
  202. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.945
  203. gendstat: EHG WSHG 0.436
  204. gendstat: EHG Turkey_N 1.166
  205. gendstat: EHG PPN 1.093
  206. gendstat: EHG Serbia_IronGates_Mesolithic -0.151
  207. gendstat: EHG Iran_GanjDareh_N 2.196
  208. gendstat: EHG ONG.SG 2.394
  209. gendstat: EHG Russia_MLBA_Sintashta 0.951
  210. gendstat: EHG Tarim_EMBA1 0.022
  211. gendstat: EHG CentralSteppeMLBA 1.000
  212. gendstat: China_YR_MN Turkey_Boncuklu_N 1.033
  213. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 0.918
  214. gendstat: China_YR_MN WSHG 0.104
  215. gendstat: China_YR_MN Turkey_N 0.719
  216. gendstat: China_YR_MN PPN 0.799
  217. gendstat: China_YR_MN Serbia_IronGates_Mesolithic -0.406
  218. gendstat: China_YR_MN Iran_GanjDareh_N 1.792
  219. gendstat: China_YR_MN ONG.SG 2.686
  220. gendstat: China_YR_MN Russia_MLBA_Sintashta 0.457
  221. gendstat: China_YR_MN Tarim_EMBA1 -0.254
  222. gendstat: China_YR_MN CentralSteppeMLBA 0.484
  223. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG -0.528
  224. gendstat: Turkey_Boncuklu_N WSHG -0.953
  225. gendstat: Turkey_Boncuklu_N Turkey_N -0.716
  226. gendstat: Turkey_Boncuklu_N PPN -0.205
  227. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic -1.981
  228. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N 0.842
  229. gendstat: Turkey_Boncuklu_N ONG.SG 1.212
  230. gendstat: Turkey_Boncuklu_N Russia_MLBA_Sintashta -1.027
  231. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 -1.320
  232. gendstat: Turkey_Boncuklu_N CentralSteppeMLBA -1.018
  233. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.515
  234. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.071
  235. gendstat: Russia_Shamanka_Eneolithic.SG PPN 0.274
  236. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -1.273
  237. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 1.377
  238. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 2.229
  239. gendstat: Russia_Shamanka_Eneolithic.SG Russia_MLBA_Sintashta -0.283
  240. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -1.018
  241. gendstat: Russia_Shamanka_Eneolithic.SG CentralSteppeMLBA -0.262
  242. gendstat: WSHG Turkey_N 0.619
  243. gendstat: WSHG PPN 0.651
  244. gendstat: WSHG Serbia_IronGates_Mesolithic -0.573
  245. gendstat: WSHG Iran_GanjDareh_N 1.663
  246. gendstat: WSHG ONG.SG 2.043
  247. gendstat: WSHG Russia_MLBA_Sintashta 0.356
  248. gendstat: WSHG Tarim_EMBA1 -0.408
  249. gendstat: WSHG CentralSteppeMLBA 0.386
  250. gendstat: Turkey_N PPN 0.289
  251. gendstat: Turkey_N Serbia_IronGates_Mesolithic -1.689
  252. gendstat: Turkey_N Iran_GanjDareh_N 1.598
  253. gendstat: Turkey_N ONG.SG 1.797
  254. gendstat: Turkey_N Russia_MLBA_Sintashta -0.544
  255. gendstat: Turkey_N Tarim_EMBA1 -1.077
  256. gendstat: Turkey_N CentralSteppeMLBA -0.532
  257. gendstat: PPN Serbia_IronGates_Mesolithic -1.367
  258. gendstat: PPN Iran_GanjDareh_N 0.979
  259. gendstat: PPN ONG.SG 1.274
  260. gendstat: PPN Russia_MLBA_Sintashta -0.578
  261. gendstat: PPN Tarim_EMBA1 -1.047
  262. gendstat: PPN CentralSteppeMLBA -0.568
  263. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 2.682
  264. gendstat: Serbia_IronGates_Mesolithic ONG.SG 2.879
  265. gendstat: Serbia_IronGates_Mesolithic Russia_MLBA_Sintashta 1.486
  266. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 0.157
  267. gendstat: Serbia_IronGates_Mesolithic CentralSteppeMLBA 1.548
  268. gendstat: Iran_GanjDareh_N ONG.SG 0.504
  269. gendstat: Iran_GanjDareh_N Russia_MLBA_Sintashta -2.018
  270. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -2.208
  271. gendstat: Iran_GanjDareh_N CentralSteppeMLBA -2.051
  272. gendstat: ONG.SG Russia_MLBA_Sintashta -2.201
  273. gendstat: ONG.SG Tarim_EMBA1 -2.591
  274. gendstat: ONG.SG CentralSteppeMLBA -2.242
  275. gendstat: Russia_MLBA_Sintashta Tarim_EMBA1 -0.872
  276. gendstat: Russia_MLBA_Sintashta CentralSteppeMLBA 0.064
  277. gendstat: Tarim_EMBA1 CentralSteppeMLBA 0.921
  278.  
  279. removing /tmp/fsx.28540
  280. ##end of qpAdm: 4.264 seconds cpu 0.831 Mbytes in use
  281.  
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