API tools faq
paste
misnomer001

Birhor Chokhopani fail

misnomer001
Jul 30th, 2022
176
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 11.05 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: bir2
  11. S1X: bir2
  12. indivname: bir2.ind
  13. snpname: bir2.snp
  14. genotypename: bir2.geno
  15. ## qpAdm version: 1520
  16. seed: 1632632777
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.2663
  20.  
  21. left pops:
  22. Birhor
  23. GanjDarehN
  24. Tarim_EMBA1
  25. ONG.SG
  26. Chokhopani
  27.  
  28. right pops:
  29. Mbuti.DG
  30. Cpaleo
  31. WSHG
  32. EHG
  33. IG_Serbia
  34. PPN
  35. Shamanka_En
  36. CHG
  37. Turkey_N
  38. Dai.DG
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 3 dof: 6 chisq: 46.852 tail: 2.00249296e-08 dofdiff: 8 chisqdiff: -46.852 taildiff: 1
  43. B:
  44. scale 1.000 1.000 1.000
  45. Cpaleo -0.308 1.041 -0.745
  46. WSHG 2.023 0.745 -1.149
  47. EHG 1.696 0.410 -1.217
  48. IG_Serbia 0.809 -0.029 -0.238
  49. PPN 0.492 -0.535 1.208
  50. Shamanka_En -0.106 1.717 1.102
  51. CHG 0.710 -0.820 1.229
  52. Turkey_N 0.522 -0.528 0.945
  53. Dai.DG -0.503 1.734 0.716
  54. A:
  55. scale 53.411 82.239 272.998
  56. GanjDarehN 0.593 -1.497 0.930
  57. Tarim_EMBA1 1.905 0.536 0.003
  58. ONG.SG -0.133 0.050 -0.306
  59. Chokhopani 0.046 1.213 1.744
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 46.852 taildiff: 2.00249296e-08
  65. B:
  66. scale 46.100 27.818 219.087 67.446
  67. Cpaleo -1.133 -0.119 0.329 0.711
  68. WSHG 0.239 2.145 -1.118 0.318
  69. EHG 0.294 1.749 -1.285 -0.077
  70. IG_Serbia 0.383 0.797 -0.926 -0.121
  71. PPN 0.855 0.374 -1.275 -0.040
  72. Shamanka_En -1.319 0.216 -0.164 2.191
  73. CHG 1.220 0.533 -1.327 -0.308
  74. Turkey_N 0.836 0.413 -1.129 -0.128
  75. Dai.DG -1.663 -0.226 -0.668 1.859
  76. A:
  77. scale 2.000 2.000 2.000 2.000
  78. GanjDarehN 2.000 0.000 0.000 0.000
  79. Tarim_EMBA1 0.000 2.000 0.000 0.000
  80. ONG.SG 0.000 0.000 2.000 0.000
  81. Chokhopani 0.000 0.000 0.000 2.000
  82.  
  83.  
  84. best coefficients: 0.102 0.022 0.792 0.084
  85. totmean: 0.102 0.022 0.792 0.084
  86. boot mean: 0.102 0.022 0.793 0.084
  87. std. errors: 0.023 0.010 0.052 0.036
  88.  
  89. error covariance (* 1,000,000)
  90. 510 -115 -1040 645
  91. -115 93 141 -119
  92. -1040 141 2702 -1803
  93. 645 -119 -1803 1278
  94.  
  95.  
  96. summ: Birhor 4 0.000000 0.102 0.022 0.793 0.084 510 -115 -1040 645 93 ...
  97. 141 -119 2702 -1803 1278
  98.  
  99. fixed pat wt dof chisq tail prob
  100. 0000 0 6 46.852 2.00249e-08 0.102 0.022 0.792 0.084
  101. 0001 1 7 56.469 7.62087e-10 0.061 0.026 0.913 0.000
  102. 0010 1 7 308.222 0 0.388 -0.004 0.000 0.616 infeasible
  103. 0100 1 7 415.460 0 0.420 0.000 -0.097 0.676 infeasible
  104. 1000 1 7 67.921 3.88262e-12 0.000 0.039 1.007 -0.046 infeasible
  105. 0011 2 8 3202.407 0 1.277 -0.277 0.000 0.000 infeasible
  106. 0101 2 8 62.865 1.27384e-10 0.079 0.000 0.921 0.000
  107. 0110 2 8 304.927 0 0.388 0.000 0.000 0.612
  108. 1001 2 8 70.177 4.53226e-12 0.000 0.043 0.957 0.000
  109. 1010 2 8 1127.668 0 0.000 0.157 0.000 0.843
  110. 1100 2 8 82.206 1.7571e-14 0.000 0.000 1.070 -0.070 infeasible
  111. 0111 3 9 3294.191 0 1.000 0.000 0.000 0.000
  112. 1011 3 9 4026.456 0 0.000 1.000 0.000 0.000
  113. 1101 3 9 91.144 9.59485e-16 0.000 0.000 1.000 0.000
  114. 1110 3 9 1262.903 0 0.000 0.000 0.000 1.000
  115. best pat: 0000 2.00249e-08 - -
  116. best pat: 1000 0 chi(nested): 21.069 p-value for nested model: 4.43028e-06
  117. best pat: 0101 1.27384e-10 not nested
  118. best pat: 1101 9.59485e-16 chi(nested): 28.279 p-value for nested model: 1.05028e-07
  119.  
  120. coeffs: 0.102 0.022 0.792 0.084
  121.  
  122. ## dscore:: f_4(Base, Fit, Rbase, right2)
  123. ## genstat:: f_4(Base, Fit, right1, right2)
  124.  
  125. details: GanjDarehN Cpaleo -0.024573 -20.001214
  126. details: Tarim_EMBA1 Cpaleo -0.004264 -3.238531
  127. details: ONG.SG Cpaleo 0.001503 1.275257
  128. details: Chokhopani Cpaleo 0.010545 7.151785
  129. dscore: Cpaleo f4: -0.000527 Z: -0.520250
  130.  
  131. details: GanjDarehN WSHG 0.005177 4.154664
  132. details: Tarim_EMBA1 WSHG 0.077099 53.280253
  133. details: ONG.SG WSHG -0.005103 -4.692472
  134. details: Chokhopani WSHG 0.004717 3.142547
  135. dscore: WSHG f4: -0.001451 Z: -1.553944
  136.  
  137. details: GanjDarehN EHG 0.006369 5.342711
  138. details: Tarim_EMBA1 EHG 0.062859 44.925113
  139. details: ONG.SG EHG -0.005864 -5.548371
  140. details: Chokhopani EHG -0.001147 -0.790874
  141. dscore: EHG f4: -0.002733 Z: -2.975967
  142.  
  143. details: GanjDarehN IG_Serbia 0.008313 8.151067
  144. details: Tarim_EMBA1 IG_Serbia 0.028661 24.985540
  145. details: ONG.SG IG_Serbia -0.004229 -4.468702
  146. details: Chokhopani IG_Serbia -0.001787 -1.420474
  147. dscore: IG_Serbia f4: -0.002030 Z: -2.487580
  148.  
  149. details: GanjDarehN PPN 0.018551 16.932520
  150. details: Tarim_EMBA1 PPN 0.013443 11.698587
  151. details: ONG.SG PPN -0.005821 -5.602571
  152. details: Chokhopani PPN -0.000593 -0.471032
  153. dscore: PPN f4: -0.002470 Z: -2.772179
  154.  
  155. details: GanjDarehN Shamanka_En -0.028621 -26.451869
  156. details: Tarim_EMBA1 Shamanka_En 0.007747 6.696751
  157. details: ONG.SG Shamanka_En -0.000747 -0.760478
  158. details: Chokhopani Shamanka_En 0.032491 25.934484
  159. dscore: Shamanka_En f4: -0.000612 Z: -0.722515
  160.  
  161. details: GanjDarehN CHG 0.026465 23.299848
  162. details: Tarim_EMBA1 CHG 0.019155 14.764276
  163. details: ONG.SG CHG -0.006055 -5.587741
  164. details: Chokhopani CHG -0.004567 -3.458045
  165. dscore: CHG f4: -0.002057 Z: -2.205242
  166.  
  167. details: GanjDarehN Turkey_N 0.018145 19.550089
  168. details: Tarim_EMBA1 Turkey_N 0.014863 14.803403
  169. details: ONG.SG Turkey_N -0.005151 -5.836628
  170. details: Chokhopani Turkey_N -0.001892 -1.667500
  171. dscore: Turkey_N f4: -0.002060 Z: -2.702249
  172.  
  173. details: GanjDarehN Dai.DG -0.036079 -34.152467
  174. details: Tarim_EMBA1 Dai.DG -0.008132 -6.862241
  175. details: ONG.SG Dai.DG -0.003049 -2.897050
  176. details: Chokhopani Dai.DG 0.027570 20.585828
  177. dscore: Dai.DG f4: -0.003954 Z: -4.336361
  178.  
  179. gendstat: Mbuti.DG Cpaleo -0.520
  180. gendstat: Mbuti.DG WSHG -1.554
  181. gendstat: Mbuti.DG EHG -2.976
  182. gendstat: Mbuti.DG IG_Serbia -2.488
  183. gendstat: Mbuti.DG PPN -2.772
  184. gendstat: Mbuti.DG Shamanka_En -0.723
  185. gendstat: Mbuti.DG CHG -2.205
  186. gendstat: Mbuti.DG Turkey_N -2.702
  187. gendstat: Mbuti.DG Dai.DG -4.336
  188. gendstat: Cpaleo WSHG -0.916
  189. gendstat: Cpaleo EHG -2.064
  190. gendstat: Cpaleo IG_Serbia -1.559
  191. gendstat: Cpaleo PPN -1.844
  192. gendstat: Cpaleo Shamanka_En -0.097
  193. gendstat: Cpaleo CHG -1.326
  194. gendstat: Cpaleo Turkey_N -1.606
  195. gendstat: Cpaleo Dai.DG -3.834
  196. gendstat: WSHG EHG -1.663
  197. gendstat: WSHG IG_Serbia -0.774
  198. gendstat: WSHG PPN -1.124
  199. gendstat: WSHG Shamanka_En 0.999
  200. gendstat: WSHG CHG -0.620
  201. gendstat: WSHG Turkey_N -0.764
  202. gendstat: WSHG Dai.DG -2.764
  203. gendstat: EHG IG_Serbia 1.081
  204. gendstat: EHG PPN 0.311
  205. gendstat: EHG Shamanka_En 2.543
  206. gendstat: EHG CHG 0.709
  207. gendstat: EHG Turkey_N 0.929
  208. gendstat: EHG Dai.DG -1.381
  209. gendstat: IG_Serbia PPN -0.604
  210. gendstat: IG_Serbia Shamanka_En 1.805
  211. gendstat: IG_Serbia CHG -0.031
  212. gendstat: IG_Serbia Turkey_N -0.053
  213. gendstat: IG_Serbia Dai.DG -2.281
  214. gendstat: PPN Shamanka_En 2.131
  215. gendstat: PPN CHG 0.469
  216. gendstat: PPN Turkey_N 0.693
  217. gendstat: PPN Dai.DG -1.617
  218. gendstat: Shamanka_En CHG -1.533
  219. gendstat: Shamanka_En Turkey_N -1.931
  220. gendstat: Shamanka_En Dai.DG -5.863
  221. gendstat: CHG Turkey_N -0.003
  222. gendstat: CHG Dai.DG -1.907
  223. gendstat: Turkey_N Dai.DG -2.375
  224.  
  225. removing /tmp/fsx.2663
  226. ##end of qpAdm: 21.484 seconds cpu 0.504 Mbytes in use
  227.  
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!