## High Level Requirements List for Compmem Lab Deb Install

### Switch to 'testing' branch, if not already there

sources=/etc/apt/sources.list
echo 'deb http://ftp.us.debian.org/debian testing main' >> $sources
echo 'deb-src http://security.debian.org/debian testing main' >> $sources
echo 'deb http://security.debian.org/debian-security testing/updates main' >> $sources
echo 'deb-src http://security.debian.org/debian-security testing/updates main' >> $sources

### add necessary ppas, like non-free

#### contrib non-free
echo $'\n#contrib non-free' >> $sources
echo 'deb http://deb.debian.org/debian testing main contrib non-free' >> $sources
echo 'deb-src http://deb.debian.org/debian testing main contrib non-free' >> $sources
echo 'deb http://deb.debian.org/debian testing-updates main contrib non-free' >> $sources
echo 'deb-src http://deb.debian.org/debian testing-updates main contrib non-free' >> $sources
echo 'deb http://security.debian.org/ testing/updates main contrib non-free' >> $sources
echo 'deb-src http://security.debian.org/ testing/updates main contrib non-free' >> $sources

#### nvidia drivers
echo $'\n#nvidia drivers' >> $sources
echo 'deb http://httpredir.debian.org/debian/ testing main contrib non-free' >> $sources

#### sublime text ppa
echo $'\n#sublime text editor' >> $sources
add-apt-repository ppa:webupd8team/sublime-text-3

### update and upgrade
apt-get update -y
apt-get upgrade -y

#### install headers for nvidia drivers
apt install linux-headers-$(uname -r|sed 's/[^-]*-[^-]*-//') nvidia-driver


### install packages through apt
apt-get install -y --install-suggests \
ssh \
education-laptop# \
#kde-plasma-desktop \
#texlive-full

### install regular packages --install-suggests
apt-get install -y --install-suggests \
gcc \
g++ \
sudo \
vim \
#texlive-math-extra \
#texlive-science \
texstudio \
chromium \
vlc \
wine \
inkscape \
filezilla \
pandoc \
pandoc-citeproc \
pandoc-data \
pandoc-pandocfilters \
sublime-text-installer \
git \
zotero-standalone \
emacs \
gparted \
qemu-kvm \
r-base \
r-base-dev

#### CUDA
wget -O ./packages/cuda.deb \
https://developer.nvidia.com/compute/cuda/8.0/Prod2/local_installers/cuda-repo-ubuntu1604-8-0-local-ga2_8.0.61-1_amd64-deb
dpkg -i ./packages/cuda.deb
wget -O ./packages/cuda_patch.deb \
https://developer.nvidia.com/compute/cuda/8.0/Prod2/patches/2/cuda-repo-ubuntu1604-8-0-local-cublas-performance-update_8.0.61-1_amd64-deb
dpkg -i ./packages/cuda_patch.deb

#### CUDNN
wget -O ./packages/cudnn.tgz \
https://developer.nvidia.com/compute/machine-learning/cudnn/secure/v5.1/prod_20161129/8.0/cudnn-8.0-linux-x64-v5.1-tgz
tar xvzf ./packages/cudnn.tgz
cd ./packages
cp -P cuda/include/cudnn.h /usr/local/cuda/include
cp -P cuda/lib64/libcudnn* /usr/local/cuda/lib64
chmod a+r /usr/local/cuda/include/cudnn.h /usr/local/cuda/lib64/libcudnn*
apt-get install -y --install-suggests nvidia-cuda-toolkit
cd ..

#### docker
wget -O ./packages/docker.sh https://get.docker.com
bash ./packages/docker.sh

#### atom
wget -O ./packages/atom.deb https://atom.io/download/deb
dpkg -i ./packages/atom.deb

#### visual studio code
wget -O ./packages/vscode.deb https://go.microsoft.com/fwlink/?LinkID=760868
dpkg -i ./packages/vscode.deb

#### conda
wget -O ./packages/conda.sh https://repo.continuum.io/archive/Anaconda3-5.0.1-Linux-x86_64.sh
bash ./packages/conda.sh -b -p $HOME/anaconda

#### fix dependencies
apt-get install -f


### configure packages

conda update conda

#### pip install:
pip install tensorflow-gpu
pip install tensorflow
pip install keras
pip install kivy
pip install numba
pip install pandoc-fignos
pip install pandoc-eqnos
pip install pandoc-tablenos
pip install jupyter_contrib_nbextensions

#### create virtualenv for python 2:
conda create -n python2 python=2.7 anaconda

#### optional "--tyler" parameter for themes
if [[ $1 == "--tyler" ]]; then

    ### jupyter dark theme
    mkdir ~/.jupyter/custom
    wget -O ~/.jupyter/custom/custom.css https://raw.githubusercontent.com/powerpak/jupyter-dark-theme/master/custom.css

    ### install themes

    #### install kvantum graphic backend
    apt-get install -y --install-recommends \
    libx11-dev \
    libxext-dev \
    qtbase5-dev \
    libqt5svg5-dev \
    libqt5x11extras5-dev \
    qttools5-dev-tools



    #### install papirus theme
    sudo add-apt-repository ppa:papirus/papirus
    sudo apt-get update
    sudo apt-get install -y --install-recommends arc-kde
    #### install papirus icon theme
    sudo apt-get install -y --install-recommends papirus-icon-theme

fi

echo $'********Make sure to add your name to the sudoers file*********\n askubuntu.com/questions/884494/is-not-in-the-sudoers-file-this-incident-will-be-reported'