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willingc

skel-nofw

willingc
Apr 25th, 2018
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  1. [12:52:28] willingc at Carols-MacBook-Pro in ~
  2. $ python3 -m venv myrepoenv
  3.  
  4. [12:52:44] willingc at Carols-MacBook-Pro in ~
  5. $ source myrepoenv/bin/activate
  6. (myrepoenv)
  7. [12:52:57] willingc at Carols-MacBook-Pro in ~
  8. $ mkdir r2d2test
  9. (myrepoenv)
  10. [12:53:06] willingc at Carols-MacBook-Pro in ~
  11. $ cd r2d2test
  12. (myrepoenv)
  13. [12:53:14] willingc at Carols-MacBook-Pro in ~/r2d2test
  14. $ git clone https://github.com/jupyter/repo2docker.git
  15. Cloning into 'repo2docker'...
  16. remote: Counting objects: 2932, done.
  17. remote: Total 2932 (delta 0), reused 0 (delta 0), pack-reused 2931
  18. Receiving objects: 100% (2932/2932), 517.95 KiB | 2.86 MiB/s, done.
  19. Resolving deltas: 100% (1765/1765), done.
  20. (myrepoenv)
  21. [12:53:37] willingc at Carols-MacBook-Pro in ~/r2d2test
  22. $ cd repo2docker/
  23. (myrepoenv)
  24. [12:53:43] willingc at Carols-MacBook-Pro in ~/r2d2test/repo2docker on master
  25. $ pip install -e .
  26. Obtaining file:///Users/willingc/r2d2test/repo2docker
  27. Collecting docker (from jupyter-repo2docker==0.5.0)
  28. Using cached https://files.pythonhosted.org/packages/e4/c0/ab62cdb6117c1b9824e54f707060eb63ef7e4026d9aedf2d10853ba6df98/docker-3.2.1-py2.py3-none-any.whl
  29. Collecting traitlets (from jupyter-repo2docker==0.5.0)
  30. Using cached https://files.pythonhosted.org/packages/93/d6/abcb22de61d78e2fc3959c964628a5771e47e7cc60d53e9342e21ed6cc9a/traitlets-4.3.2-py2.py3-none-any.whl
  31. Collecting python-json-logger (from jupyter-repo2docker==0.5.0)
  32. Using cached https://files.pythonhosted.org/packages/00/32/8ca0071f8df6c4c7d0107f1891fc88ec7b7169000cc591cd30280235604d/python_json_logger-0.1.8-py2.py3-none-any.whl
  33. Collecting escapism (from jupyter-repo2docker==0.5.0)
  34. Using cached https://files.pythonhosted.org/packages/d2/28/0f93611a7b8f50a5d22a576af9fe06af32abe5e2c47f09f64e39f8ea6dc3/escapism-1.0.0-py2.py3-none-any.whl
  35. Collecting jinja2 (from jupyter-repo2docker==0.5.0)
  36. Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
  37. Collecting ruamel.yaml>=0.15 (from jupyter-repo2docker==0.5.0)
  38. Using cached https://files.pythonhosted.org/packages/c1/ad/9557a78f1b61951623c56225e05dacdd81f80519f13fc39a926a5793edfa/ruamel.yaml-0.15.37.tar.gz
  39. Collecting websocket-client>=0.32.0 (from docker->jupyter-repo2docker==0.5.0)
  40. Using cached https://files.pythonhosted.org/packages/9d/fb/f51a03e232e00d6c504dfe815aed090c894ba3f8d3f7fd9612f3e227bf24/websocket_client-0.47.0-py2.py3-none-any.whl
  41. Collecting requests!=2.18.0,>=2.14.2 (from docker->jupyter-repo2docker==0.5.0)
  42. Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl
  43. Collecting docker-pycreds>=0.2.2 (from docker->jupyter-repo2docker==0.5.0)
  44. Using cached https://files.pythonhosted.org/packages/1c/8b/538e392ecd02aef761390fd30f057af73679839bd2096130689d73142aea/docker_pycreds-0.2.2-py2.py3-none-any.whl
  45. Collecting six>=1.4.0 (from docker->jupyter-repo2docker==0.5.0)
  46. Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl
  47. Collecting ipython-genutils (from traitlets->jupyter-repo2docker==0.5.0)
  48. Using cached https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl
  49. Collecting decorator (from traitlets->jupyter-repo2docker==0.5.0)
  50. Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
  51. Requirement already satisfied: setuptools in /Users/willingc/myrepoenv/lib/python3.6/site-packages (from python-json-logger->jupyter-repo2docker==0.5.0)
  52. Collecting MarkupSafe>=0.23 (from jinja2->jupyter-repo2docker==0.5.0)
  53. Using cached https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz
  54. Collecting urllib3<1.23,>=1.21.1 (from requests!=2.18.0,>=2.14.2->docker->jupyter-repo2docker==0.5.0)
  55. Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl
  56. Collecting idna<2.7,>=2.5 (from requests!=2.18.0,>=2.14.2->docker->jupyter-repo2docker==0.5.0)
  57. Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl
  58. Collecting chardet<3.1.0,>=3.0.2 (from requests!=2.18.0,>=2.14.2->docker->jupyter-repo2docker==0.5.0)
  59. Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
  60. Collecting certifi>=2017.4.17 (from requests!=2.18.0,>=2.14.2->docker->jupyter-repo2docker==0.5.0)
  61. Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl
  62. Installing collected packages: six, websocket-client, urllib3, idna, chardet, certifi, requests, docker-pycreds, docker, ipython-genutils, decorator, traitlets, python-json-logger, escapism, MarkupSafe, jinja2, ruamel.yaml, jupyter-repo2docker
  63. Running setup.py install for MarkupSafe ... done
  64. Running setup.py install for ruamel.yaml ... done
  65. Running setup.py develop for jupyter-repo2docker
  66. Successfully installed MarkupSafe-1.0 certifi-2018.4.16 chardet-3.0.4 decorator-4.3.0 docker-3.2.1 docker-pycreds-0.2.2 escapism-1.0.0 idna-2.6 ipython-genutils-0.2.0 jinja2-2.10 jupyter-repo2docker python-json-logger-0.1.8 requests-2.18.4 ruamel.yaml-0.15.37 six-1.11.0 traitlets-4.3.2 urllib3-1.22 websocket-client-0.47.0
  67. You are using pip version 9.0.3, however version 10.0.1 is available.
  68. You should consider upgrading via the 'pip install --upgrade pip' command.
  69. (myrepoenv)
  70. [12:54:03] willingc at Carols-MacBook-Pro in ~/r2d2test/repo2docker on master
  71. $ repo2docker --debug https://github.com/willingc/ThinkDSP
  72. [Repo2Docker] Looking for repo2docker_config in /Users/willingc/r2d2test/repo2docker
  73. Cloning into '/var/folders/7l/wcc2bqsd5pd48ljr1qm63nym0000gn/T/repo2dockerp6p3rcck'...
  74. remote: Counting objects: 1953, done.
  75. remote: Compressing objects: 100% (2/2), done.
  76. remote: Total 1953 (delta 0), reused 0 (delta 0), pack-reused 1950
  77. Receiving objects: 100% (1953/1953), 188.07 MiB | 19.87 MiB/s, done.
  78. Resolving deltas: 100% (1026/1026), done.
  79.  
  80. FROM buildpack-deps:artful
  81.  
  82. # Set up locales properly
  83. RUN apt-get update && \
  84. apt-get install --yes --no-install-recommends locales && \
  85. apt-get purge && \
  86. apt-get clean && \
  87. rm -rf /var/lib/apt/lists/*
  88.  
  89. RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \
  90. locale-gen
  91.  
  92. ENV LC_ALL en_US.UTF-8
  93. ENV LANG en_US.UTF-8
  94. ENV LANGUAGE en_US.UTF-8
  95.  
  96. # Use bash as default shell, rather than sh
  97. ENV SHELL /bin/bash
  98.  
  99. # Set up user
  100. ARG NB_USER
  101. ARG NB_UID
  102. ENV USER ${NB_USER}
  103. ENV HOME /home/${NB_USER}
  104.  
  105. RUN adduser --disabled-password \
  106. --gecos "Default user" \
  107. --uid ${NB_UID} \
  108. ${NB_USER}
  109. WORKDIR ${HOME}
  110.  
  111. RUN apt-get update && \
  112. apt-get install --yes --no-install-recommends \
  113. less \
  114. npm \
  115. unzip \
  116. && apt-get purge && \
  117. apt-get clean && \
  118. rm -rf /var/lib/apt/lists/*
  119.  
  120. EXPOSE 8888
  121.  
  122. # Almost all environment variables
  123. ENV APP_BASE /srv
  124. ENV CONDA_DIR ${APP_BASE}/conda
  125. ENV NB_PYTHON_PREFIX ${CONDA_DIR}
  126. # Special case PATH
  127. ENV PATH ${CONDA_DIR}/bin:${PATH}
  128. # If scripts required during build are present, copy them
  129.  
  130. COPY conda/install-miniconda.bash /tmp/install-miniconda.bash
  131.  
  132. COPY conda/environment.py-3.6.frozen.yml /tmp/environment.yml
  133. RUN bash /tmp/install-miniconda.bash && \
  134. rm /tmp/install-miniconda.bash /tmp/environment.yml
  135.  
  136.  
  137.  
  138. # Copy and chown stuff. This doubles the size of the repo, because
  139. # you can't actually copy as USER, only as root! Thanks, Docker!
  140. USER root
  141. COPY src/ ${HOME}
  142. RUN chown -R ${NB_USER}:${NB_USER} ${HOME}
  143.  
  144. # Run assemble scripts! These will actually build the specification
  145. # in the repository into the image.
  146. RUN apt-get update && \
  147. apt-get install --yes --no-install-recommends pandoc cowsay fortune && \
  148. apt-get purge && \
  149. apt-get clean && \
  150. rm -rf /var/lib/apt/lists/*
  151.  
  152. USER ${NB_USER}
  153. RUN conda env update -n root -f "environment.yml" && \
  154. conda clean -tipsy && \
  155. conda list -n root
  156.  
  157.  
  158.  
  159. # Container image Labels!
  160. # Put these at the end, since we don't want to rebuild everything
  161. # when these change! Did I mention I hate Dockerfile cache semantics?
  162.  
  163.  
  164. # We always want containers to run as non-root
  165. USER ${NB_USER}
  166.  
  167. # Make sure that postBuild scripts are marked executable before executing them
  168. # Specify the default command to run
  169. CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
  170.  
  171. Using CondaBuildPack builder
  172. Step 1/30 : FROM buildpack-deps:artful
  173. ---> 2167a553c969
  174. Step 2/30 : RUN apt-get update && apt-get install --yes --no-install-recommends locales && apt-get purge && apt-get clean && rm -rf /var/lib/apt/lists/*
  175. ---> Using cache
  176. ---> 286441841f41
  177. Step 3/30 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
  178. ---> Using cache
  179. ---> 1908b03e9f5d
  180. Step 4/30 : ENV LC_ALL en_US.UTF-8
  181. ---> Using cache
  182. ---> 742e4eddbb69
  183. Step 5/30 : ENV LANG en_US.UTF-8
  184. ---> Using cache
  185. ---> c5e6bd20660b
  186. Step 6/30 : ENV LANGUAGE en_US.UTF-8
  187. ---> Using cache
  188. ---> a89484210793
  189. Step 7/30 : ENV SHELL /bin/bash
  190. ---> Using cache
  191. ---> 06692ebd8bae
  192. Step 8/30 : ARG NB_USER
  193. ---> Using cache
  194. ---> 44a228000989
  195. Step 9/30 : ARG NB_UID
  196. ---> Using cache
  197. ---> 2e181fc18d0e
  198. Step 10/30 : ENV USER ${NB_USER}
  199. ---> Using cache
  200. ---> c42cf4033004
  201. Step 11/30 : ENV HOME /home/${NB_USER}
  202. ---> Using cache
  203. ---> d42511acdec4
  204. Step 12/30 : RUN adduser --disabled-password --gecos "Default user" --uid ${NB_UID} ${NB_USER}
  205. ---> Using cache
  206. ---> 399ce4786460
  207. Step 13/30 : WORKDIR ${HOME}
  208. ---> Using cache
  209. ---> e80aeedc7fae
  210. Step 14/30 : RUN apt-get update && apt-get install --yes --no-install-recommends less npm unzip && apt-get purge && apt-get clean && rm -rf /var/lib/apt/lists/*
  211. ---> Using cache
  212. ---> ff54614a3998
  213. Step 15/30 : EXPOSE 8888
  214. ---> Using cache
  215. ---> 7192956a240b
  216. Step 16/30 : ENV APP_BASE /srv
  217. ---> Using cache
  218. ---> ffc569044dc9
  219. Step 17/30 : ENV CONDA_DIR ${APP_BASE}/conda
  220. ---> Using cache
  221. ---> d392c654fcad
  222. Step 18/30 : ENV NB_PYTHON_PREFIX ${CONDA_DIR}
  223. ---> Using cache
  224. ---> 2a69a3446404
  225. Step 19/30 : ENV PATH ${CONDA_DIR}/bin:${PATH}
  226. ---> Using cache
  227. ---> 885309128568
  228. Step 20/30 : COPY conda/install-miniconda.bash /tmp/install-miniconda.bash
  229. ---> Using cache
  230. ---> 411f10bd9861
  231. Step 21/30 : COPY conda/environment.py-3.6.frozen.yml /tmp/environment.yml
  232. ---> Using cache
  233. ---> 536631683d50
  234. Step 22/30 : RUN bash /tmp/install-miniconda.bash && rm /tmp/install-miniconda.bash /tmp/environment.yml
  235. ---> Using cache
  236. ---> 41b8c4ffc151
  237. Step 23/30 : USER root
  238. ---> Using cache
  239. ---> 2a685049bd28
  240. Step 24/30 : COPY src/ ${HOME}
  241. ---> ff0e10ba40e8
  242. Step 25/30 : RUN chown -R ${NB_USER}:${NB_USER} ${HOME}
  243. ---> Running in 6b8d413a782b
  244. Removing intermediate container 6b8d413a782b
  245. ---> d06e65c216e1
  246. Step 26/30 : RUN apt-get update && apt-get install --yes --no-install-recommends pandoc cowsay fortune && apt-get purge && apt-get clean && rm -rf /var/lib/apt/lists/*
  247. ---> Running in 074f195ff5bb
  248. Get:1 http://security.ubuntu.com/ubuntu artful-security InRelease [83.2 kB]
  249. Get:2 http://archive.ubuntu.com/ubuntu artful InRelease [237 kB]
  250. Get:3 http://security.ubuntu.com/ubuntu artful-security/universe Sources [18.6 kB]
  251. Get:4 http://security.ubuntu.com/ubuntu artful-security/main amd64 Packages [198 kB]
  252. Get:5 http://security.ubuntu.com/ubuntu artful-security/multiverse amd64 Packages [1,826 B]
  253. Get:6 http://security.ubuntu.com/ubuntu artful-security/restricted amd64 Packages [2,931 B]
  254. Get:7 http://security.ubuntu.com/ubuntu artful-security/universe amd64 Packages [74.3 kB]
  255. Get:8 http://archive.ubuntu.com/ubuntu artful-updates InRelease [88.7 kB]
  256. Get:9 http://archive.ubuntu.com/ubuntu artful-backports InRelease [74.6 kB]
  257. Get:10 http://archive.ubuntu.com/ubuntu artful/universe Sources [11.1 MB]
  258. Get:11 http://archive.ubuntu.com/ubuntu artful/multiverse amd64 Packages [185 kB]
  259. Get:12 http://archive.ubuntu.com/ubuntu artful/main amd64 Packages [1,416 kB]
  260. Get:13 http://archive.ubuntu.com/ubuntu artful/universe amd64 Packages [10.8 MB]
  261. Get:14 http://archive.ubuntu.com/ubuntu artful/restricted amd64 Packages [14.7 kB]
  262. Get:15 http://archive.ubuntu.com/ubuntu artful-updates/universe Sources [40.3 kB]
  263. Get:16 http://archive.ubuntu.com/ubuntu artful-updates/main amd64 Packages [323 kB]
  264. Get:17 http://archive.ubuntu.com/ubuntu artful-updates/multiverse amd64 Packages [4,384 B]
  265. Get:18 http://archive.ubuntu.com/ubuntu artful-updates/universe amd64 Packages [136 kB]
  266. Get:19 http://archive.ubuntu.com/ubuntu artful-updates/restricted amd64 Packages [2,931 B]
  267. Get:20 http://archive.ubuntu.com/ubuntu artful-backports/universe amd64 Packages [4,359 B]
  268. Get:21 http://archive.ubuntu.com/ubuntu artful-backports/main amd64 Packages [1,469 B]
  269. Fetched 24.7 MB in 6s (3,727 kB/s)
  270. Reading package lists...
  271. Reading package lists...
  272. Building dependency tree...
  273. Reading state information...
  274. The following additional packages will be installed:
  275. liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common librecode0
  276. libtext-charwidth-perl pandoc-data
  277. Suggested packages:
  278. filters fortunes x11-utils bsdmainutils texlive-latex-recommended
  279. texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra wkhtmltopdf
  280. Recommended packages:
  281. cowsay-off fortunes-min | fortune-cookie-db
  282. The following NEW packages will be installed:
  283. cowsay fortune-mod liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common
  284. librecode0 libtext-charwidth-perl pandoc pandoc-data
  285. 0 upgraded, 9 newly installed, 0 to remove and 14 not upgraded.
  286. Need to get 7,585 kB of archives.
  287. After this operation, 55.1 MB of additional disk space will be used.
  288. Get:1 http://archive.ubuntu.com/ubuntu artful/main amd64 libtext-charwidth-perl amd64 0.04-7.1 [9,492 B]
  289. Get:2 http://archive.ubuntu.com/ubuntu artful/universe amd64 cowsay all 3.03+dfsg2-3 [17.7 kB]
  290. Get:3 http://archive.ubuntu.com/ubuntu artful/main amd64 librecode0 amd64 3.6-23 [528 kB]
  291. Get:4 http://archive.ubuntu.com/ubuntu artful/universe amd64 fortune-mod amd64 1:1.99.1-7 [39.5 kB]
  292. Get:5 http://archive.ubuntu.com/ubuntu artful/universe amd64 liblua5.1-0 amd64 5.1.5-8.1build1 [105 kB]
  293. Get:6 http://archive.ubuntu.com/ubuntu artful/universe amd64 libluajit-5.1-common all 2.0.4+dfsg-1 [35.3 kB]
  294. Get:7 http://archive.ubuntu.com/ubuntu artful/universe amd64 libluajit-5.1-2 amd64 2.0.4+dfsg-1 [205 kB]
  295. Get:8 http://archive.ubuntu.com/ubuntu artful/universe amd64 pandoc-data all 1.19.2.1.0-1 [40.1 kB]
  296. Get:9 http://archive.ubuntu.com/ubuntu artful/universe amd64 pandoc amd64 1.19.2.1.0-1 [6,604 kB]
  297. debconf: delaying package configuration, since apt-utils is not installed
  298. Fetched 7,585 kB in 2s (2,692 kB/s)
  299. Selecting previously unselected package libtext-charwidth-perl.
  300. (Reading database ... 37016 files and directories currently installed.)
  301. Preparing to unpack .../0-libtext-charwidth-perl_0.04-7.1_amd64.deb ...
  302. Unpacking libtext-charwidth-perl (0.04-7.1) ...
  303. Selecting previously unselected package cowsay.
  304. Preparing to unpack .../1-cowsay_3.03+dfsg2-3_all.deb ...
  305. Unpacking cowsay (3.03+dfsg2-3) ...
  306. Selecting previously unselected package librecode0:amd64.
  307. Preparing to unpack .../2-librecode0_3.6-23_amd64.deb ...
  308. Unpacking librecode0:amd64 (3.6-23) ...
  309. Selecting previously unselected package fortune-mod.
  310. Preparing to unpack .../3-fortune-mod_1%3a1.99.1-7_amd64.deb ...
  311. Unpacking fortune-mod (1:1.99.1-7) ...
  312. Selecting previously unselected package liblua5.1-0:amd64.
  313. Preparing to unpack .../4-liblua5.1-0_5.1.5-8.1build1_amd64.deb ...
  314. Unpacking liblua5.1-0:amd64 (5.1.5-8.1build1) ...
  315. Selecting previously unselected package libluajit-5.1-common.
  316. Preparing to unpack .../5-libluajit-5.1-common_2.0.4+dfsg-1_all.deb ...
  317. Unpacking libluajit-5.1-common (2.0.4+dfsg-1) ...
  318. Selecting previously unselected package libluajit-5.1-2:amd64.
  319. Preparing to unpack .../6-libluajit-5.1-2_2.0.4+dfsg-1_amd64.deb ...
  320. Unpacking libluajit-5.1-2:amd64 (2.0.4+dfsg-1) ...
  321. Selecting previously unselected package pandoc-data.
  322. Preparing to unpack .../7-pandoc-data_1.19.2.1.0-1_all.deb ...
  323. Unpacking pandoc-data (1.19.2.1.0-1) ...
  324. Selecting previously unselected package pandoc.
  325. Preparing to unpack .../8-pandoc_1.19.2.1.0-1_amd64.deb ...
  326. Unpacking pandoc (1.19.2.1.0-1) ...
  327. Setting up libluajit-5.1-common (2.0.4+dfsg-1) ...
  328. Setting up pandoc-data (1.19.2.1.0-1) ...
  329. Processing triggers for libc-bin (2.26-0ubuntu2.1) ...
  330. Setting up librecode0:amd64 (3.6-23) ...
  331. Setting up libluajit-5.1-2:amd64 (2.0.4+dfsg-1) ...
  332. Setting up libtext-charwidth-perl (0.04-7.1) ...
  333. Setting up liblua5.1-0:amd64 (5.1.5-8.1build1) ...
  334. Setting up fortune-mod (1:1.99.1-7) ...
  335. Setting up cowsay (3.03+dfsg2-3) ...
  336. Setting up pandoc (1.19.2.1.0-1) ...
  337. Processing triggers for libc-bin (2.26-0ubuntu2.1) ...
  338. Reading package lists...
  339. Building dependency tree...
  340. Reading state information...
  341. 0 upgraded, 0 newly installed, 0 to remove and 14 not upgraded.
  342. Removing intermediate container 074f195ff5bb
  343. ---> 2dd786be1a93
  344. Step 27/30 : USER ${NB_USER}
  345. ---> Running in 3ea4a2171ee4
  346. Removing intermediate container 3ea4a2171ee4
  347. ---> 6841168fa605
  348. Step 28/30 : RUN conda env update -n root -f "environment.yml" && conda clean -tipsy && conda list -n root
  349. ---> Running in 15176805265d
  350. Fetching package metadata .............
  351. Solving package specifications: .
  352. expat-2.2.5-0. 100% |###############################| Time: 0:00:01 392.57 kB/s
  353. gettext-0.19.8 100% |###############################| Time: 0:00:03 1.78 MB/s
  354. icu-58.2-0.tar 100% |###############################| Time: 0:00:04 5.03 MB/s
  355. jpeg-9b-2.tar. 100% |###############################| Time: 0:00:00 10.03 MB/s
  356. libgfortran-3. 100% |###############################| Time: 0:00:00 3.44 MB/s
  357. libiconv-1.15- 100% |###############################| Time: 0:00:00 8.00 MB/s
  358. pcre-8.41-1.ta 100% |###############################| Time: 0:00:00 8.64 MB/s
  359. xorg-libxau-1. 100% |###############################| Time: 0:00:00 10.76 MB/s
  360. xorg-libxdmcp- 100% |###############################| Time: 0:00:00 14.64 MB/s
  361. dbus-1.11.0-0. 100% |###############################| Time: 0:00:00 9.04 MB/s
  362. libgcc-7.2.0-h 100% |###############################| Time: 0:00:00 20.64 MB/s
  363. libpng-1.6.34- 100% |###############################| Time: 0:00:00 17.64 MB/s
  364. libxcb-1.13-0. 100% |###############################| Time: 0:00:00 25.81 MB/s
  365. libxml2-2.9.8- 100% |###############################| Time: 0:00:00 8.09 MB/s
  366. openblas-0.2.2 100% |###############################| Time: 0:00:02 8.60 MB/s
  367. blas-1.1-openb 100% |###############################| Time: 0:00:00 1.36 MB/s
  368. freetype-2.8.1 100% |###############################| Time: 0:00:00 10.65 MB/s
  369. glib-2.55.0-0. 100% |###############################| Time: 0:00:00 10.01 MB/s
  370. fontconfig-2.1 100% |###############################| Time: 0:00:00 11.38 MB/s
  371. gstreamer-1.8. 100% |###############################| Time: 0:00:00 10.14 MB/s
  372. python-3.6.5-1 100% |###############################| Time: 0:00:02 10.97 MB/s
  373. gst-plugins-ba 100% |###############################| Time: 0:00:00 11.85 MB/s
  374. kiwisolver-1.0 100% |###############################| Time: 0:00:00 26.27 MB/s
  375. numpy-1.14.2-p 100% |###############################| Time: 0:00:00 11.89 MB/s
  376. pyparsing-2.2. 100% |###############################| Time: 0:00:00 23.34 MB/s
  377. pytz-2018.4-py 100% |###############################| Time: 0:00:00 27.04 MB/s
  378. sip-4.18-py36_ 100% |###############################| Time: 0:00:00 30.62 MB/s
  379. cycler-0.10.0- 100% |###############################| Time: 0:00:00 12.78 MB/s
  380. qt-5.6.2-7.tar 100% |###############################| Time: 0:00:03 11.80 MB/s
  381. scipy-1.0.1-py 100% |###############################| Time: 0:00:03 11.80 MB/s
  382. pandas-0.22.0- 100% |###############################| Time: 0:00:02 11.89 MB/s
  383. pyqt-5.6.0-py3 100% |###############################| Time: 0:00:00 12.58 MB/s
  384. matplotlib-2.2 100% |###############################| Time: 0:00:00 12.29 MB/s
  385. #
  386. # To activate this environment, use:
  387. # > source activate root
  388. #
  389. # To deactivate an active environment, use:
  390. # > source deactivate
  391. #
  392.  
  393. Cache location: /srv/conda/pkgs
  394. Will remove the following tarballs:
  395.  
  396. /srv/conda/pkgs
  397. ---------------
  398. expat-2.2.5-0.tar.bz2 434 KB
  399. scipy-1.0.1-py36_blas_openblas_200.tar.bz2 39.8 MB
  400. dbus-1.11.0-0.tar.bz2 1.6 MB
  401. pyqt-5.6.0-py36_5.tar.bz2 5.4 MB
  402. gst-plugins-base-1.8.0-0.tar.bz2 4.0 MB
  403. icu-58.2-0.tar.bz2 22.7 MB
  404. fontconfig-2.12.6-0.tar.bz2 943 KB
  405. libxml2-2.9.8-0.tar.bz2 5.0 MB
  406. libiconv-1.15-0.tar.bz2 2.0 MB
  407. cycler-0.10.0-py36_0.tar.bz2 14 KB
  408. numpy-1.14.2-py36_blas_openblas_200.tar.bz2 9.0 MB
  409. gettext-0.19.8.1-0.tar.bz2 6.3 MB
  410. libpng-1.6.34-0.tar.bz2 305 KB
  411. glib-2.55.0-0.tar.bz2 8.3 MB
  412. matplotlib-2.2.2-py36_1.tar.bz2 9.2 MB
  413. jpeg-9b-2.tar.bz2 1.0 MB
  414. kiwisolver-1.0.1-py36_1.tar.bz2 925 KB
  415. qt-5.6.2-7.tar.bz2 44.3 MB
  416. xorg-libxdmcp-1.1.2-3.tar.bz2 21 KB
  417. pyparsing-2.2.0-py36_0.tar.bz2 95 KB
  418. openblas-0.2.20-7.tar.bz2 17.0 MB
  419. pytz-2018.4-py_0.tar.bz2 215 KB
  420. python-3.6.5-1.tar.bz2 21.0 MB
  421. blas-1.1-openblas.tar.bz2 1 KB
  422. xorg-libxau-1.0.8-3.tar.bz2 14 KB
  423. libgfortran-3.0.0-1.tar.bz2 281 KB
  424. libgcc-7.2.0-h69d50b8_2.tar.bz2 304 KB
  425. pandas-0.22.0-py36_0.tar.bz2 26.1 MB
  426. freetype-2.8.1-0.tar.bz2 2.9 MB
  427. gstreamer-1.8.0-1.tar.bz2 3.3 MB
  428. libxcb-1.13-0.tar.bz2 541 KB
  429. sip-4.18-py36_1.tar.bz2 263 KB
  430. pcre-8.41-1.tar.bz2 729 KB
  431.  
  432. ---------------------------------------------------
  433. Total: 234.1 MB
  434.  
  435. Removed expat-2.2.5-0.tar.bz2
  436. Removed scipy-1.0.1-py36_blas_openblas_200.tar.bz2
  437. Removed dbus-1.11.0-0.tar.bz2
  438. Removed pyqt-5.6.0-py36_5.tar.bz2
  439. Removed gst-plugins-base-1.8.0-0.tar.bz2
  440. Removed icu-58.2-0.tar.bz2
  441. Removed fontconfig-2.12.6-0.tar.bz2
  442. Removed libxml2-2.9.8-0.tar.bz2
  443. Removed libiconv-1.15-0.tar.bz2
  444. Removed cycler-0.10.0-py36_0.tar.bz2
  445. Removed numpy-1.14.2-py36_blas_openblas_200.tar.bz2
  446. Removed gettext-0.19.8.1-0.tar.bz2
  447. Removed libpng-1.6.34-0.tar.bz2
  448. Removed glib-2.55.0-0.tar.bz2
  449. Removed matplotlib-2.2.2-py36_1.tar.bz2
  450. Removed jpeg-9b-2.tar.bz2
  451. Removed kiwisolver-1.0.1-py36_1.tar.bz2
  452. Removed qt-5.6.2-7.tar.bz2
  453. Removed xorg-libxdmcp-1.1.2-3.tar.bz2
  454. Removed pyparsing-2.2.0-py36_0.tar.bz2
  455. Removed openblas-0.2.20-7.tar.bz2
  456. Removed pytz-2018.4-py_0.tar.bz2
  457. Removed python-3.6.5-1.tar.bz2
  458. Removed blas-1.1-openblas.tar.bz2
  459. Removed xorg-libxau-1.0.8-3.tar.bz2
  460. Removed libgfortran-3.0.0-1.tar.bz2
  461. Removed libgcc-7.2.0-h69d50b8_2.tar.bz2
  462. Removed pandas-0.22.0-py36_0.tar.bz2
  463. Removed freetype-2.8.1-0.tar.bz2
  464. Removed gstreamer-1.8.0-1.tar.bz2
  465. Removed libxcb-1.13-0.tar.bz2
  466. Removed sip-4.18-py36_1.tar.bz2
  467. Removed pcre-8.41-1.tar.bz2
  468. Cache location: /srv/conda/pkgs
  469. Will remove the following packages:
  470. /srv/conda/pkgs
  471. ---------------
  472.  
  473. libgfortran-3.0.0-1 1.0 MB
  474. blas-1.1-openblas 3 KB
  475.  
  476. ---------------------------------------------------
  477. Total: 1.0 MB
  478.  
  479. removing libgfortran-3.0.0-1
  480. removing blas-1.1-openblas
  481. source cache (/srv/conda/conda-bld/src_cache)
  482. Size: 0 B
  483.  
  484. git cache (/srv/conda/conda-bld/git_cache)
  485. Size: 0 B
  486.  
  487. hg cache (/srv/conda/conda-bld/hg_cache)
  488. Size: 0 B
  489.  
  490. svn cache (/srv/conda/conda-bld/svn_cache)
  491. Size: 0 B
  492.  
  493. Total: 0 B
  494. Removing /srv/conda/conda-bld/src_cache
  495. Removing /srv/conda/conda-bld/git_cache
  496. Removing /srv/conda/conda-bld/hg_cache
  497. Removing /srv/conda/conda-bld/svn_cache
  498. # packages in environment at /srv/conda:
  499. #
  500. asn1crypto 0.22.0 py36h265ca7c_1 defaults
  501. blas 1.1 openblas conda-forge
  502. bleach 2.1.3 py_0 conda-forge
  503. ca-certificates 2018.1.18 0 conda-forge
  504. certifi 2018.1.18 py36_0 conda-forge
  505. cffi 1.10.0 py36had8d393_1 defaults
  506. chardet 3.0.4 py36h0f667ec_1 defaults
  507. conda 4.3.30 py36h5d9f9f4_0 defaults
  508. conda-env 2.6.0 h36134e3_1 defaults
  509. cryptography 2.0.3 py36ha225213_1 defaults
  510. cycler 0.10.0 py36_0 conda-forge
  511. dbus 1.11.0 0 conda-forge
  512. decorator 4.2.1 py36_0 conda-forge
  513. entrypoints 0.2.3 py36_1 conda-forge
  514. expat 2.2.5 0 conda-forge
  515. fontconfig 2.12.6 0 conda-forge
  516. freetype 2.8.1 0 conda-forge
  517. gettext 0.19.8.1 0 conda-forge
  518. glib 2.55.0 0 conda-forge
  519. gmp 6.1.2 0 conda-forge
  520. gst-plugins-base 1.8.0 0 conda-forge
  521. gstreamer 1.8.0 1 conda-forge
  522. html5lib 1.0.1 py_0 conda-forge
  523. icu 58.2 0 conda-forge
  524. idna 2.6 py36h82fb2a8_1 defaults
  525. ipykernel 4.8.2 py36_0 conda-forge
  526. ipython 6.2.1 py36_1 conda-forge
  527. ipython_genutils 0.2.0 py36_0 conda-forge
  528. ipywidgets 7.1.1 py36_0 conda-forge
  529. jedi 0.11.1 py36_0 conda-forge
  530. jinja2 2.10 py36_0 conda-forge
  531. jpeg 9b 2 conda-forge
  532. jsonschema 2.6.0 py36_1 conda-forge
  533. jupyter_client 5.2.3 py36_0 conda-forge
  534. jupyter_core 4.4.0 py_0 conda-forge
  535. jupyterlab 0.31.5 py36_1 conda-forge
  536. jupyterlab_launcher 0.10.5 py36_0 conda-forge
  537. kiwisolver 1.0.1 py36_1 conda-forge
  538. libedit 3.1.20170329 0 conda-forge
  539. libffi 3.2.1 h4deb6c0_3 defaults
  540. libgcc 7.2.0 h69d50b8_2 defaults
  541. libgcc-ng 7.2.0 h7cc24e2_2 defaults
  542. libgfortran 3.0.0 1 defaults
  543. libiconv 1.15 0 conda-forge
  544. libpng 1.6.34 0 conda-forge
  545. libsodium 1.0.16 0 conda-forge
  546. libstdcxx-ng 7.2.0 h7a57d05_2 defaults
  547. libxcb 1.13 0 conda-forge
  548. libxml2 2.9.8 0 conda-forge
  549. markupsafe 1.0 py36_0 conda-forge
  550. matplotlib 2.2.2 py36_1 conda-forge
  551. mistune 0.8.3 py_0 conda-forge
  552. nbconvert 5.3.1 py_1 conda-forge
  553. nbformat 4.4.0 py36_0 conda-forge
  554. ncurses 5.9 10 conda-forge
  555. notebook 5.4.1 py36_0 conda-forge
  556. nteract-on-jupyter 1.6.0 <pip>
  557. numpy 1.14.2 py36_blas_openblas_200 [blas_openblas] conda-forge
  558. openblas 0.2.20 7 conda-forge
  559. openssl 1.0.2n 0 conda-forge
  560. pandas 0.22.0 py36_0 conda-forge
  561. pandoc 2.1.3 0 conda-forge
  562. pandocfilters 1.4.1 py36_0 conda-forge
  563. parso 0.1.1 py_0 conda-forge
  564. pcre 8.41 1 conda-forge
  565. pexpect 4.4.0 py36_0 conda-forge
  566. pickleshare 0.7.4 py36_0 conda-forge
  567. pip 9.0.3 py36_0 conda-forge
  568. prompt_toolkit 1.0.15 py36_0 conda-forge
  569. ptyprocess 0.5.2 py36_0 conda-forge
  570. pycosat 0.6.2 py36h1a0ea17_1 defaults
  571. pycparser 2.18 py36hf9f622e_1 defaults
  572. pygments 2.2.0 py36_0 conda-forge
  573. pyopenssl 17.2.0 py36h5cc804b_0 defaults
  574. pyparsing 2.2.0 py36_0 conda-forge
  575. pyqt 5.6.0 py36_5 conda-forge
  576. pysocks 1.6.7 py36hd97a5b1_1 defaults
  577. python 3.6.5 1 conda-forge
  578. python-dateutil 2.7.2 py_0 conda-forge
  579. pytz 2018.4 py_0 conda-forge
  580. pyzmq 17.0.0 py36_4 conda-forge
  581. qt 5.6.2 7 conda-forge
  582. readline 7.0 0 conda-forge
  583. requests 2.18.4 py36he2e5f8d_1 defaults
  584. ruamel_yaml 0.11.14 py36ha2fb22d_2 defaults
  585. scipy 1.0.1 py36_blas_openblas_200 [blas_openblas] conda-forge
  586. send2trash 1.5.0 py_0 conda-forge
  587. setuptools 39.0.1 py36_0 conda-forge
  588. simplegeneric 0.8.1 py36_0 conda-forge
  589. sip 4.18 py36_1 conda-forge
  590. six 1.11.0 py36_1 conda-forge
  591. sqlite 3.20.1 2 conda-forge
  592. terminado 0.8.1 py36_0 conda-forge
  593. testpath 0.3.1 py36_0 conda-forge
  594. tk 8.6.7 0 conda-forge
  595. tornado 4.5.3 py36_0 conda-forge
  596. traitlets 4.3.2 py36_0 conda-forge
  597. urllib3 1.22 py36hbe7ace6_0 defaults
  598. wcwidth 0.1.7 py36_0 conda-forge
  599. webencodings 0.5 py36_0 conda-forge
  600. wheel 0.30.0 py36_2 conda-forge
  601. widgetsnbextension 3.2.0 py36_0 conda-forge
  602. xorg-libxau 1.0.8 3 conda-forge
  603. xorg-libxdmcp 1.1.2 3 conda-forge
  604. xz 5.2.3 0 conda-forge
  605. yaml 0.1.7 h96e3832_1 defaults
  606. zeromq 4.2.5 1 conda-forge
  607. zlib 1.2.11 0 conda-forge
  608. Removing intermediate container 15176805265d
  609. ---> 59e4e0cd4059
  610. Step 29/30 : USER ${NB_USER}
  611. ---> Running in 162f2f645b87
  612. Removing intermediate container 162f2f645b87
  613. ---> b25113bb97dc
  614. Step 30/30 : CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
  615. ---> Running in 993e1fc96d2b
  616. Removing intermediate container 993e1fc96d2b
  617. ---> 9ca1bb1b212c
  618. {"aux": {"ID": "sha256:9ca1bb1b212c74b1a7755f4b49d4358710f91b411bfa056466d8613f93f4b78d"}}Successfully built 9ca1bb1b212c
  619. Successfully tagged r2dhttps-3a-2f-2fgithub-2ecom-2fwillingc-2fthinkdsp1524686066:latest
  620. [I 19:57:50.382 NotebookApp] Writing notebook server cookie secret to /home/willingc/.local/share/jupyter/runtime/notebook_cookie_secret
  621. [I 19:57:51.379 NotebookApp] JupyterLab beta preview extension loaded from /srv/conda/lib/python3.6/site-packages/jupyterlab
  622. [I 19:57:51.379 NotebookApp] JupyterLab application directory is /srv/conda/share/jupyter/lab
  623. [I 19:57:51.399 NotebookApp] nteract extension loaded from /srv/conda/lib/python3.6/site-packages/nteract_on_jupyter
  624. [I 19:57:51.409 NotebookApp] Serving notebooks from local directory: /home/willingc
  625. [I 19:57:51.409 NotebookApp] 0 active kernels
  626. [I 19:57:51.409 NotebookApp] The Jupyter Notebook is running at:
  627. [I 19:57:51.409 NotebookApp] http://0.0.0.0:52413/?token=f1d3e92c8d543d28fbf74edcb534490dd527d1501cce913b
  628. [I 19:57:51.410 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
  629. [W 19:57:51.410 NotebookApp] No web browser found: could not locate runnable browser.
  630. [C 19:57:51.410 NotebookApp]
  631.  
  632. Copy/paste this URL into your browser when you connect for the first time,
  633. to login with a token:
  634. http://0.0.0.0:52413/?token=f1d3e92c8d543d28fbf74edcb534490dd527d1501cce913b
  635. [I 19:58:22.245 NotebookApp] 302 GET /?token=f1d3e92c8d543d28fbf74edcb534490dd527d1501cce913b (172.17.0.1) 0.62ms
  636. ^CStopping container...
  637. Traceback (most recent call last):
  638. File "/Users/willingc/myrepoenv/bin/repo2docker", line 11, in <module>
  639. load_entry_point('jupyter-repo2docker', 'console_scripts', 'repo2docker')()
  640. File "/Users/willingc/r2d2test/repo2docker/repo2docker/__main__.py", line 7, in main
  641. f.start()
  642. File "/Users/willingc/r2d2test/repo2docker/repo2docker/app.py", line 634, in start
  643. self.run_image()
  644. File "/Users/willingc/r2d2test/repo2docker/repo2docker/app.py", line 537, in run_image
  645. for line in container.logs(stream=True):
  646. File "/Users/willingc/myrepoenv/lib/python3.6/site-packages/docker/types/daemon.py", line 30, in __next__
  647. return next(self._stream)
  648. File "/Users/willingc/myrepoenv/lib/python3.6/site-packages/docker/api/client.py", line 344, in _multiplexed_response_stream_helper
  649. header = response.raw.read(STREAM_HEADER_SIZE_BYTES)
  650. File "/Users/willingc/myrepoenv/lib/python3.6/site-packages/urllib3/response.py", line 384, in read
  651. data = self._fp.read(amt)
  652. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 449, in read
  653. n = self.readinto(b)
  654. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 483, in readinto
  655. return self._readinto_chunked(b)
  656. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 578, in _readinto_chunked
  657. chunk_left = self._get_chunk_left()
  658. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 546, in _get_chunk_left
  659. chunk_left = self._read_next_chunk_size()
  660. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 506, in _read_next_chunk_size
  661. line = self.fp.readline(_MAXLINE + 1)
  662. File "/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/lib/python3.6/socket.py", line 586, in readinto
  663. return self._sock.recv_into(b)
  664. KeyboardInterrupt
  665. (myrepoenv)
  666. [12:58:35] willingc at Carols-MacBook-Pro in ~/r2d2test/repo2docker on master
  667. $
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