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misnomer001

arm_mba dali_mlba success

misnomer001
Jan 21st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 2146572022
  4.  
  5. left pops:
  6. Armenia_MBA.SG
  7. Caucasus_Kura_Araxes
  8. Dali_MLBA
  9.  
  10. right pops:
  11. Sarazm_EN
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. CHG
  17. EEHG
  18. WEHG
  19. WSHG
  20. Onge.DG
  21. Russia_Shamanka_EN.SG
  22. Steppe_Eneolithic
  23. Caucasus_Eneolithic
  24. Kazakhstan_Botai.SG
  25.  
  26. 0 Armenia_MBA.SG 4
  27. 1 Caucasus_Kura_Araxes 4
  28. 2 Dali_MLBA 3
  29. 3 Sarazm_EN 2
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 CHG 2
  35. 9 EEHG 4
  36. 10 WEHG 36
  37. 11 WSHG 3
  38. 12 Onge.DG 2
  39. 13 Russia_Shamanka_EN.SG 10
  40. 14 Steppe_Eneolithic 3
  41. 15 Caucasus_Eneolithic 3
  42. 16 Kazakhstan_Botai.SG 3
  43. jackknife block size: 0.050
  44. snps: 1150475 indivs: 120
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150475
  47. coverage: Armenia_MBA.SG 919421
  48. coverage: Caucasus_Kura_Araxes 967288
  49. coverage: Dali_MLBA 931588
  50. coverage: Sarazm_EN 867960
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: CHG 1149558
  56. coverage: EEHG 1029995
  57. coverage: WEHG 1141246
  58. coverage: WSHG 858019
  59. coverage: Onge.DG 1120748
  60. coverage: Russia_Shamanka_EN.SG 1149998
  61. coverage: Steppe_Eneolithic 1017729
  62. coverage: Caucasus_Eneolithic 784983
  63. coverage: Kazakhstan_Botai.SG 1149870
  64. dof (jackknife): 463.300
  65. numsnps used: 1150475
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 13.051 tail: 0.365366429 dofdiff: 14 chisqdiff: -13.051 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N -0.326
  72. PPN -0.404
  73. Anatolia_N -0.246
  74. Iberia_MN 0.168
  75. CHG -0.459
  76. EEHG 1.724
  77. WEHG 1.484
  78. WSHG 1.515
  79. Onge.DG 0.564
  80. Russia_Shamanka_EN.SG 1.013
  81. Steppe_Eneolithic 0.699
  82. Caucasus_Eneolithic -0.421
  83. Kazakhstan_Botai.SG 1.718
  84. A:
  85. scale 609.250
  86. Caucasus_Kura_Araxes -0.411
  87. Dali_MLBA 1.353
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 13.051 taildiff: 0.365366429
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N -0.338 1.423
  96. PPN -0.427 1.763
  97. Anatolia_N -0.263 0.986
  98. Iberia_MN 0.154 1.082
  99. CHG -0.475 1.162
  100. EEHG 1.735 -0.286
  101. WEHG 1.479 -0.396
  102. WSHG 1.514 -1.251
  103. Onge.DG 0.543 -0.102
  104. Russia_Shamanka_EN.SG 1.010 -0.341
  105. Steppe_Eneolithic 0.687 -0.222
  106. Caucasus_Eneolithic -0.431 1.233
  107. Kazakhstan_Botai.SG 1.710 -0.935
  108. A:
  109. scale 653.521 2276.654
  110. Caucasus_Kura_Araxes -0.725 -1.091
  111. Dali_MLBA 1.214 -0.899
  112.  
  113.  
  114. best coefficients: 0.767 0.233
  115. Jackknife mean: 0.766559681 0.233440319
  116. std. errors: 0.031 0.031
  117.  
  118. error covariance (* 1000000)
  119. 984 -984
  120. -984 984
  121.  
  122.  
  123. summ: Armenia_MBA.SG 2 0.365366 0.767 0.233 984 -984 984
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 13.051 0.365366 0.767 0.233
  127. 01 1 13 62.406 1.94292e-08 1.000 0.000
  128. 10 1 13 446.466 0 0.000 1.000
  129. best pat: 00 0.365366 - -
  130. best pat: 01 1.94292e-08 chi(nested): 49.355 p-value for nested model: 2.13543e-12
  131.  
  132. coeffs: 0.767 0.233
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: Caucasus_Kura_Araxes Ganj_Dareh_N -0.000384 -1.284407
  138. details: Dali_MLBA Ganj_Dareh_N -0.001241 -3.743770
  139. dscore: Ganj_Dareh_N f4: -0.000584 Z: -2.082115
  140.  
  141. details: Caucasus_Kura_Araxes PPN -0.000468 -1.397211
  142. details: Dali_MLBA PPN -0.001557 -4.183995
  143. dscore: PPN f4: -0.000722 Z: -2.321854
  144.  
  145. details: Caucasus_Kura_Araxes Anatolia_N -0.000313 -0.994766
  146. details: Dali_MLBA Anatolia_N -0.000964 -2.906290
  147. dscore: Anatolia_N f4: -0.000465 Z: -1.620423
  148.  
  149. details: Caucasus_Kura_Araxes Iberia_MN -0.000798 -2.469389
  150. details: Dali_MLBA Iberia_MN -0.000219 -0.595657
  151. dscore: Iberia_MN f4: -0.000663 Z: -2.222521
  152.  
  153. details: Caucasus_Kura_Araxes CHG -0.000128 -0.394695
  154. details: Dali_MLBA CHG -0.001395 -3.837318
  155. dscore: CHG f4: -0.000423 Z: -1.409543
  156.  
  157. details: Caucasus_Kura_Araxes EEHG -0.001855 -5.277920
  158. details: Dali_MLBA EEHG 0.003318 8.732296
  159. dscore: EEHG f4: -0.000648 Z: -2.010724
  160.  
  161. details: Caucasus_Kura_Araxes WEHG -0.001568 -4.871175
  162. details: Dali_MLBA WEHG 0.002832 7.646129
  163. dscore: WEHG f4: -0.000542 Z: -1.834218
  164.  
  165. details: Caucasus_Kura_Araxes WSHG -0.001168 -3.503918
  166. details: Dali_MLBA WSHG 0.003269 9.082113
  167. dscore: WSHG f4: -0.000133 Z: -0.432633
  168.  
  169. details: Caucasus_Kura_Araxes Onge.DG -0.000666 -1.938065
  170. details: Dali_MLBA Onge.DG 0.000982 2.527598
  171. dscore: Onge.DG f4: -0.000282 Z: -0.875202
  172.  
  173. details: Caucasus_Kura_Araxes Russia_Shamanka_EN.SG -0.001071 -3.432217
  174. details: Dali_MLBA Russia_Shamanka_EN.SG 0.001950 5.417169
  175. dscore: Russia_Shamanka_EN.SG f4: -0.000367 Z: -1.263900
  176.  
  177. details: Caucasus_Kura_Araxes Steppe_Eneolithic -0.000769 -2.434816
  178. details: Dali_MLBA Steppe_Eneolithic 0.001289 3.764813
  179. dscore: Steppe_Eneolithic f4: -0.000289 Z: -0.997988
  180.  
  181. details: Caucasus_Kura_Araxes Caucasus_Eneolithic -0.000220 -0.614955
  182. details: Dali_MLBA Caucasus_Eneolithic -0.001344 -3.782711
  183. dscore: Caucasus_Eneolithic f4: -0.000482 Z: -1.482041
  184.  
  185. details: Caucasus_Kura_Araxes Kazakhstan_Botai.SG -0.001528 -4.670633
  186. details: Dali_MLBA Kazakhstan_Botai.SG 0.003509 9.555495
  187. dscore: Kazakhstan_Botai.SG f4: -0.000354 Z: -1.154365
  188.  
  189. gendstat: Sarazm_EN Ganj_Dareh_N -2.082
  190. gendstat: Sarazm_EN PPN -2.322
  191. gendstat: Sarazm_EN Anatolia_N -1.620
  192. gendstat: Sarazm_EN Iberia_MN -2.223
  193. gendstat: Sarazm_EN CHG -1.410
  194. gendstat: Sarazm_EN EEHG -2.011
  195. gendstat: Sarazm_EN WEHG -1.834
  196. gendstat: Sarazm_EN WSHG -0.433
  197. gendstat: Sarazm_EN Onge.DG -0.875
  198. gendstat: Sarazm_EN Russia_Shamanka_EN.SG -1.264
  199. gendstat: Sarazm_EN Steppe_Eneolithic -0.998
  200. gendstat: Sarazm_EN Caucasus_Eneolithic -1.482
  201. gendstat: Sarazm_EN Kazakhstan_Botai.SG -1.154
  202. gendstat: Ganj_Dareh_N PPN -0.455
  203. gendstat: Ganj_Dareh_N Anatolia_N 0.488
  204. gendstat: Ganj_Dareh_N Iberia_MN -0.286
  205. gendstat: Ganj_Dareh_N CHG 0.573
  206. gendstat: Ganj_Dareh_N EEHG -0.202
  207. gendstat: Ganj_Dareh_N WEHG 0.155
  208. gendstat: Ganj_Dareh_N WSHG 1.426
  209. gendstat: Ganj_Dareh_N Onge.DG 1.010
  210. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 0.837
  211. gendstat: Ganj_Dareh_N Steppe_Eneolithic 1.146
  212. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 0.344
  213. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG 0.774
  214. gendstat: PPN Anatolia_N 1.210
  215. gendstat: PPN Iberia_MN 0.241
  216. gendstat: PPN CHG 0.946
  217. gendstat: PPN EEHG 0.220
  218. gendstat: PPN WEHG 0.674
  219. gendstat: PPN WSHG 1.738
  220. gendstat: PPN Onge.DG 1.379
  221. gendstat: PPN Russia_Shamanka_EN.SG 1.261
  222. gendstat: PPN Steppe_Eneolithic 1.458
  223. gendstat: PPN Caucasus_Eneolithic 0.716
  224. gendstat: PPN Kazakhstan_Botai.SG 1.115
  225. gendstat: Anatolia_N Iberia_MN -1.103
  226. gendstat: Anatolia_N CHG 0.151
  227. gendstat: Anatolia_N EEHG -0.649
  228. gendstat: Anatolia_N WEHG -0.388
  229. gendstat: Anatolia_N WSHG 1.130
  230. gendstat: Anatolia_N Onge.DG 0.642
  231. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.422
  232. gendstat: Anatolia_N Steppe_Eneolithic 0.740
  233. gendstat: Anatolia_N Caucasus_Eneolithic -0.061
  234. gendstat: Anatolia_N Kazakhstan_Botai.SG 0.404
  235. gendstat: Iberia_MN CHG 0.800
  236. gendstat: Iberia_MN EEHG 0.048
  237. gendstat: Iberia_MN WEHG 0.548
  238. gendstat: Iberia_MN WSHG 1.757
  239. gendstat: Iberia_MN Onge.DG 1.244
  240. gendstat: Iberia_MN Russia_Shamanka_EN.SG 1.132
  241. gendstat: Iberia_MN Steppe_Eneolithic 1.400
  242. gendstat: Iberia_MN Caucasus_Eneolithic 0.583
  243. gendstat: Iberia_MN Kazakhstan_Botai.SG 1.051
  244. gendstat: CHG EEHG -0.676
  245. gendstat: CHG WEHG -0.405
  246. gendstat: CHG WSHG 0.891
  247. gendstat: CHG Onge.DG 0.436
  248. gendstat: CHG Russia_Shamanka_EN.SG 0.194
  249. gendstat: CHG Steppe_Eneolithic 0.454
  250. gendstat: CHG Caucasus_Eneolithic -0.175
  251. gendstat: CHG Kazakhstan_Botai.SG 0.217
  252. gendstat: EEHG WEHG 0.450
  253. gendstat: EEHG WSHG 1.929
  254. gendstat: EEHG Onge.DG 1.116
  255. gendstat: EEHG Russia_Shamanka_EN.SG 1.016
  256. gendstat: EEHG Steppe_Eneolithic 1.304
  257. gendstat: EEHG Caucasus_Eneolithic 0.498
  258. gendstat: EEHG Kazakhstan_Botai.SG 1.166
  259. gendstat: WEHG WSHG 1.628
  260. gendstat: WEHG Onge.DG 0.892
  261. gendstat: WEHG Russia_Shamanka_EN.SG 0.750
  262. gendstat: WEHG Steppe_Eneolithic 1.099
  263. gendstat: WEHG Caucasus_Eneolithic 0.199
  264. gendstat: WEHG Kazakhstan_Botai.SG 0.807
  265. gendstat: WSHG Onge.DG -0.478
  266. gendstat: WSHG Russia_Shamanka_EN.SG -0.917
  267. gendstat: WSHG Steppe_Eneolithic -0.583
  268. gendstat: WSHG Caucasus_Eneolithic -1.037
  269. gendstat: WSHG Kazakhstan_Botai.SG -0.966
  270. gendstat: Onge.DG Russia_Shamanka_EN.SG -0.345
  271. gendstat: Onge.DG Steppe_Eneolithic -0.026
  272. gendstat: Onge.DG Caucasus_Eneolithic -0.609
  273. gendstat: Onge.DG Kazakhstan_Botai.SG -0.234
  274. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic 0.312
  275. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic -0.393
  276. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG 0.054
  277. gendstat: Steppe_Eneolithic Caucasus_Eneolithic -0.646
  278. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG -0.249
  279. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG 0.389
  280.  
  281. ## end of run
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