sample,reads sequenced,reads after trimming,reads mapped 1-pass,% reads mapped 1-pass,reads mapped 2-pass,% reads mapped 2-pass,reads mapped 2-pass multiply,% reads mapped 2-pass multiply,reads quant. in genes,% reads quant. in genes,reads quant. in transcripts,% reads quant. in transcripts,% reads unique
GR-FLAG.t00_rep1,56916960,54527012,N/A,N/A,50137548,91.9499274965,6068414.0,11.1291885937,22531687.0,82.6441287485,23858173.61,87.5095580517,0.4292
GR-FLAG.t00_rep2,76567910,73566216,N/A,N/A,68335870,92.8902881181,7590922.0,10.3184891282,30727472.0,83.5369104753,32335802.97,87.9093821273,0.4342
GR-FLAG.t00_rep3,48813444,45584294,N/A,N/A,41721274,91.5255460576,5218150.0,11.4472541793,18839332.0,82.6571186997,19510279.12,85.6008831463,0.4433
GR-FLAG.t1_rep1,79217332,76421760,N/A,N/A,70727742,92.5492189659,8121442.0,10.6271329004,32095531.0,83.9957912511,33565692.32,87.8432852633,0.4338
GR-FLAG.t1_rep2,53485272,51259830,N/A,N/A,47491118,92.6478257926,5360136.0,10.4567962867,21654821.0,84.4904128632,22564721.16,88.04056182,0.4343
GR-FLAG.t1_rep3,52357802,49363570,N/A,N/A,45409496,91.989894572,5374958.0,10.8885115076,20489486.0,83.0146036845,21338742.92,86.4554282439,0.4409
GR-FLAG.t4_rep1,61375974,59149726,N/A,N/A,54699088,92.4756405465,6377096.0,10.78127733,24938757.0,84.3241674526,26071722.23,88.1550059251,0.428
GR-FLAG.t4_rep2,47292888,45292318,N/A,N/A,42016976,92.7684381267,4662866.0,10.2950482685,19149540.0,84.5597701579,19851516.35,87.6595291502,0.4347
GR-FLAG.t4_rep3,65027756,61219970,N/A,N/A,56843088,92.8505649382,6283274.0,10.2634385479,25568536.0,83.5300507334,26531786.84,86.6769024552,0.4474
GR-FLAG.t8_rep1,60044830,57593446,N/A,N/A,53395198,92.7105455715,6017292.0,10.4478763087,24338744.0,84.5191447652,25437090.97,88.3332835128,0.4222
GR-FLAG.t8_rep2,80307860,76816766,N/A,N/A,70711270,92.0518705513,8446276.0,10.9953548422,31902749.0,83.0619424931,33344385.9,86.8153858495,0.4396
GR-FLAG.t8_rep3,76286280,73102872,N/A,N/A,66672560,91.2037491496,8597872.0,11.7613327148,30328167.0,82.9739411606,31770575.59,86.9201844491,0.4383
GR-FLAG.t12_rep1,33562770,32252120,N/A,N/A,29833026,92.4994263943,3383142.0,10.489673237,13536358.0,83.9408882269,14102984.03,87.4546171228,0.4337
GR-FLAG.t12_rep2,75590678,72831650,N/A,N/A,67420076,92.5697495526,7691440.0,10.5605735968,30505920.0,83.7710528321,31901400.62,87.6031247953,0.4262
GR-FLAG.t12_rep3,126663794,122180090,N/A,N/A,113502086,92.8973665022,12752268.0,10.4372717355,51337276.0,84.0354201736,53855197.25,88.157075756,0.4363