misnomer001

Areni Armenia_C fail with Kotias

Jan 5th, 2020
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3.  
  4. allsnps: YES
  5. ## qpAdm version: 810
  6. seed: 1851962066
  7.  
  8. left pops:
  9. Armenia_C
  10. Anatolia_N
  11. Caucasus_Eneolithic
  12. Georgia_Kotias.SG
  13. Russia_Khvalynsk_EN
  14.  
  15. right pops:
  16. Mbuti.DG
  17. Morocco_Iberomaurusian
  18. Ganj_Dareh_N
  19. PPN
  20. Anatolia_Meso
  21. Iberia_MN
  22. Russia_MA1.SG
  23. Georgia_Satsurblia.SG
  24. Kostenki14.SG
  25. Russia_Karelia_HG
  26. Serbia_Iron_Gates_HG
  27. Tyumen_HG
  28. Onge.DG
  29.  
  30. 0 Armenia_C 5
  31. 1 Anatolia_N 22
  32. 2 Caucasus_Eneolithic 3
  33. 3 Georgia_Kotias.SG 1
  34. 4 Russia_Khvalynsk_EN 3
  35. 5 Mbuti.DG 5
  36. 6 Morocco_Iberomaurusian 6
  37. 7 Ganj_Dareh_N 7
  38. 8 PPN 8
  39. 9 Anatolia_Meso 1
  40. 10 Iberia_MN 4
  41. 11 Russia_MA1.SG 1
  42. 12 Georgia_Satsurblia.SG 1
  43. 13 Kostenki14.SG 1
  44. 14 Russia_Karelia_HG 2
  45. 15 Serbia_Iron_Gates_HG 32
  46. 16 Tyumen_HG 2
  47. 17 Onge.DG 2
  48. jackknife block size: 0.050
  49. snps: 1150526 indivs: 106
  50. number of blocks for block jackknife: 552
  51. ## ncols: 1150526
  52. coverage: Armenia_C 1033326
  53. coverage: Anatolia_N 1134099
  54. coverage: Caucasus_Eneolithic 784983
  55. coverage: Georgia_Kotias.SG 1149097
  56. coverage: Russia_Khvalynsk_EN 758497
  57. coverage: Mbuti.DG 1150376
  58. coverage: Morocco_Iberomaurusian 1101342
  59. coverage: Ganj_Dareh_N 1029695
  60. coverage: PPN 835499
  61. coverage: Anatolia_Meso 989345
  62. coverage: Iberia_MN 967760
  63. coverage: Russia_MA1.SG 805960
  64. coverage: Georgia_Satsurblia.SG 801311
  65. coverage: Kostenki14.SG 1048972
  66. coverage: Russia_Karelia_HG 1010733
  67. coverage: Serbia_Iron_Gates_HG 1139259
  68. coverage: Tyumen_HG 807474
  69. coverage: Onge.DG 1120748
  70. dof (jackknife): 467.086
  71. numsnps used: 1150526
  72. codimension 1
  73. f4info:
  74. f4rank: 3 dof: 9 chisq: 13.834 tail: 0.128356736 dofdiff: 11 chisqdiff: -13.834 taildiff: 1
  75. B:
  76. scale 1.000 1.000 1.000
  77. Morocco_Iberomaurusian -0.135 0.637 0.212
  78. Ganj_Dareh_N 0.050 -0.777 -1.713
  79. PPN -0.779 1.353 0.052
  80. Anatolia_Meso -0.947 1.702 1.159
  81. Iberia_MN -0.494 1.390 0.676
  82. Russia_MA1.SG 1.298 0.054 -0.352
  83. Georgia_Satsurblia.SG -0.165 -1.727 2.154
  84. Kostenki14.SG 0.253 0.356 -0.229
  85. Russia_Karelia_HG 1.969 0.432 0.747
  86. Serbia_Iron_Gates_HG 0.921 1.003 1.333
  87. Tyumen_HG 1.894 0.162 -0.132
  88. Onge.DG 0.373 0.003 0.230
  89. A:
  90. scale 406.904 557.989 2065.634
  91. Anatolia_N -0.621 0.884 0.916
  92. Caucasus_Eneolithic -0.173 -0.535 0.378
  93. Georgia_Kotias.SG -0.236 -1.697 1.564
  94. Russia_Khvalynsk_EN 1.879 0.230 0.757
  95.  
  96.  
  97. full rank
  98. f4info:
  99. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 13.834 taildiff: 0.128356736
  100. B:
  101. scale 1.000 1.000 1.000 1.000
  102. Morocco_Iberomaurusian -0.122 0.642 0.217 0.287
  103. Ganj_Dareh_N 0.027 -0.807 -1.507 0.436
  104. PPN -0.756 1.320 0.112 0.435
  105. Anatolia_Meso -0.909 1.687 1.191 0.975
  106. Iberia_MN -0.472 1.383 0.588 -0.019
  107. Russia_MA1.SG 1.296 0.097 -0.489 0.776
  108. Georgia_Satsurblia.SG -0.158 -1.685 2.537 -0.079
  109. Kostenki14.SG 0.260 0.369 -0.164 1.296
  110. Russia_Karelia_HG 1.984 0.523 0.295 -0.854
  111. Serbia_Iron_Gates_HG 0.945 1.057 0.926 -2.592
  112. Tyumen_HG 1.902 0.245 -0.462 0.907
  113. Onge.DG 0.378 0.024 0.216 -0.163
  114. A:
  115. scale 409.309 573.410 2017.261 7718.233
  116. Anatolia_N -0.626 0.959 0.801 -0.501
  117. Caucasus_Eneolithic -0.201 -0.552 0.100 -1.831
  118. Georgia_Kotias.SG -0.100 -1.650 1.752 0.122
  119. Russia_Khvalynsk_EN 1.886 0.232 0.527 -0.619
  120.  
  121.  
  122. best coefficients: 0.037 1.243 -0.361 0.081
  123. Jackknife mean: 0.066279346 1.162792306 -0.317545246 0.088473593
  124. std. errors: 0.113 0.299 0.167 0.036
  125.  
  126. error covariance (* 1000000)
  127. 12870 -32939 17406 2663
  128. -32939 89651 -48979 -7733
  129. 17406 -48979 27812 3761
  130. 2663 -7733 3761 1310
  131.  
  132.  
  133. summ: Armenia_C 4 0.128357 0.066 1.163 -0.318 0.088 12870 -32939 17406 2663 89651 -48979 -7733 27812 3761 1310
  134.  
  135. fixed pat wt dof chisq tail prob
  136. 0000 0 9 13.834 0.128357 0.037 1.243 -0.361 0.081 infeasible
  137. 0001 1 10 107.346 1.82725e-18 -0.345 2.403 -1.058 0.000 infeasible
  138. 0010 1 10 29.825 0.000915024 0.259 0.610 0.000 0.131
  139. 0100 1 10 99.047 8.45138e-17 0.477 -0.000 0.336 0.186
  140. 1000 1 10 17.123 0.0716808 0.000 1.350 -0.422 0.072 infeasible
  141. 0011 2 11 71.394 6.63157e-11 0.192 0.807 -0.000 0.001
  142. 0101 2 11 225.151 0 0.511 -0.000 0.489 0.000
  143. 0110 2 11 487.008 0 0.643 0.000 -0.000 0.357
  144. 1001 2 11 19.694 0.0497144 -0.000 1.437 -0.437 0.000 infeasible
  145. 1010 2 11 86.099 9.65046e-14 0.000 0.924 -0.000 0.076
  146. 1100 2 11 579.721 0 0.000 -0.000 0.967 0.033
  147. 0111 3 12 1119.537 0 1.000 -0.000 -0.000 0.000
  148. 1011 3 12 96.126 3.18451e-15 0.000 1.000 -0.000 0.000
  149. 1101 3 12 580.572 0 0.000 -0.000 1.000 0.000
  150. 1110 3 12 1710.866 0 0.000 0.000 -0.000 1.000
  151. best pat: 0000 0.128357 - -
  152. best pat: 0010 0.000915024 chi(nested): 15.991 p-value for nested model: 6.36489e-05
  153. best pat: 0011 6.63157e-11 chi(nested): 41.569 p-value for nested model: 1.13769e-10
  154. best pat: 1011 3.18451e-15 chi(nested): 24.732 p-value for nested model: 6.58951e-07
  155.  
  156. coeffs: 0.037 1.243 -0.361 0.081
  157.  
  158. ## dscore:: f_4(Base, Fit, Rbase, right2)
  159. ## genstat:: f_4(Base, Fit, right1, right2)
  160.  
  161. details: Anatolia_N Morocco_Iberomaurusian 0.001376 7.096187
  162. details: Caucasus_Eneolithic Morocco_Iberomaurusian -0.000683 -2.262262
  163. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.001525 -4.333879
  164. details: Russia_Khvalynsk_EN Morocco_Iberomaurusian -0.000188 -0.688938
  165. dscore: Morocco_Iberomaurusian f4: -0.000262 Z: -0.716154
  166.  
  167. details: Anatolia_N Ganj_Dareh_N -0.001926 -9.560819
  168. details: Caucasus_Eneolithic Ganj_Dareh_N 0.000486 1.498086
  169. details: Georgia_Kotias.SG Ganj_Dareh_N 0.001208 3.292013
  170. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.000546 -1.892194
  171. dscore: Ganj_Dareh_N f4: 0.000051 Z: 0.130846
  172.  
  173. details: Anatolia_N PPN 0.003455 16.905870
  174. details: Caucasus_Eneolithic PPN -0.001017 -3.136831
  175. details: Georgia_Kotias.SG PPN -0.003368 -9.662720
  176. details: Russia_Khvalynsk_EN PPN -0.002828 -9.504237
  177. dscore: PPN f4: -0.000149 Z: -0.376869
  178.  
  179. details: Anatolia_N Anatolia_Meso 0.004670 16.970480
  180. details: Caucasus_Eneolithic Anatolia_Meso -0.001520 -3.651245
  181. details: Georgia_Kotias.SG Anatolia_Meso -0.003393 -6.978633
  182. details: Russia_Khvalynsk_EN Anatolia_Meso -0.003225 -9.177555
  183. dscore: Anatolia_Meso f4: -0.000752 Z: -1.498324
  184.  
  185. details: Anatolia_N Iberia_MN 0.003344 16.305435
  186. details: Caucasus_Eneolithic Iberia_MN -0.001108 -3.387568
  187. details: Georgia_Kotias.SG Iberia_MN -0.003256 -9.366117
  188. details: Russia_Khvalynsk_EN Iberia_MN -0.001402 -4.969795
  189. dscore: Iberia_MN f4: -0.000190 Z: -0.482205
  190.  
  191. details: Anatolia_N Russia_MA1.SG -0.002019 -7.532599
  192. details: Caucasus_Eneolithic Russia_MA1.SG -0.001000 -2.696686
  193. details: Georgia_Kotias.SG Russia_MA1.SG -0.000872 -1.946811
  194. details: Russia_Khvalynsk_EN Russia_MA1.SG 0.005874 16.497253
  195. dscore: Russia_MA1.SG f4: -0.000525 Z: -1.131817
  196.  
  197. details: Anatolia_N Georgia_Satsurblia.SG -0.001458 -5.451047
  198. details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.001796 4.974736
  199. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.007342 14.810272
  200. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.000640 -1.776861
  201. dscore: Georgia_Satsurblia.SG f4: -0.000528 Z: -1.152357
  202.  
  203. details: Anatolia_N Kostenki14.SG 0.000109 0.398052
  204. details: Caucasus_Eneolithic Kostenki14.SG -0.001016 -2.666548
  205. details: Georgia_Kotias.SG Kostenki14.SG -0.001175 -2.517659
  206. details: Russia_Khvalynsk_EN Kostenki14.SG 0.001229 3.509664
  207. dscore: Kostenki14.SG f4: -0.000734 Z: -1.591589
  208.  
  209. details: Anatolia_N Russia_Karelia_HG -0.001858 -6.978980
  210. details: Caucasus_Eneolithic Russia_Karelia_HG -0.001201 -2.957289
  211. details: Georgia_Kotias.SG Russia_Karelia_HG -0.001557 -3.279721
  212. details: Russia_Khvalynsk_EN Russia_Karelia_HG 0.009643 25.600895
  213. dscore: Russia_Karelia_HG f4: -0.000213 Z: -0.429622
  214.  
  215. details: Anatolia_N Serbia_Iron_Gates_HG 0.000931 4.446353
  216. details: Caucasus_Eneolithic Serbia_Iron_Gates_HG -0.000942 -2.895547
  217. details: Georgia_Kotias.SG Serbia_Iron_Gates_HG -0.002367 -6.612090
  218. details: Russia_Khvalynsk_EN Serbia_Iron_Gates_HG 0.005301 18.118188
  219. dscore: Serbia_Iron_Gates_HG f4: 0.000152 Z: 0.382571
  220.  
  221. details: Anatolia_N Tyumen_HG -0.002723 -10.650332
  222. details: Caucasus_Eneolithic Tyumen_HG -0.001520 -3.786169
  223. details: Georgia_Kotias.SG Tyumen_HG -0.001407 -3.329858
  224. details: Russia_Khvalynsk_EN Tyumen_HG 0.008764 23.458015
  225. dscore: Tyumen_HG f4: -0.000768 Z: -1.585147
  226.  
  227. details: Anatolia_N Onge.DG -0.000364 -1.596200
  228. details: Caucasus_Eneolithic Onge.DG -0.000166 -0.511712
  229. details: Georgia_Kotias.SG Onge.DG 0.000166 0.408745
  230. details: Russia_Khvalynsk_EN Onge.DG 0.001908 6.301253
  231. dscore: Onge.DG f4: -0.000124 Z: -0.316236
  232.  
  233. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.716
  234. gendstat: Mbuti.DG Ganj_Dareh_N 0.131
  235. gendstat: Mbuti.DG PPN -0.377
  236. gendstat: Mbuti.DG Anatolia_Meso -1.498
  237. gendstat: Mbuti.DG Iberia_MN -0.482
  238. gendstat: Mbuti.DG Russia_MA1.SG -1.132
  239. gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.152
  240. gendstat: Mbuti.DG Kostenki14.SG -1.592
  241. gendstat: Mbuti.DG Russia_Karelia_HG -0.430
  242. gendstat: Mbuti.DG Serbia_Iron_Gates_HG 0.383
  243. gendstat: Mbuti.DG Tyumen_HG -1.585
  244. gendstat: Mbuti.DG Onge.DG -0.316
  245. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.725
  246. gendstat: Morocco_Iberomaurusian PPN 0.275
  247. gendstat: Morocco_Iberomaurusian Anatolia_Meso -0.956
  248. gendstat: Morocco_Iberomaurusian Iberia_MN 0.175
  249. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.538
  250. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.519
  251. gendstat: Morocco_Iberomaurusian Kostenki14.SG -0.988
  252. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG 0.100
  253. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG 1.031
  254. gendstat: Morocco_Iberomaurusian Tyumen_HG -0.985
  255. gendstat: Morocco_Iberomaurusian Onge.DG 0.312
  256. gendstat: Ganj_Dareh_N PPN -0.460
  257. gendstat: Ganj_Dareh_N Anatolia_Meso -1.496
  258. gendstat: Ganj_Dareh_N Iberia_MN -0.543
  259. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.149
  260. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.158
  261. gendstat: Ganj_Dareh_N Kostenki14.SG -1.543
  262. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.527
  263. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.241
  264. gendstat: Ganj_Dareh_N Tyumen_HG -1.687
  265. gendstat: Ganj_Dareh_N Onge.DG -0.389
  266. gendstat: PPN Anatolia_Meso -1.241
  267. gendstat: PPN Iberia_MN -0.114
  268. gendstat: PPN Russia_MA1.SG -0.736
  269. gendstat: PPN Georgia_Satsurblia.SG -0.718
  270. gendstat: PPN Kostenki14.SG -1.156
  271. gendstat: PPN Russia_Karelia_HG -0.125
  272. gendstat: PPN Serbia_Iron_Gates_HG 0.772
  273. gendstat: PPN Tyumen_HG -1.168
  274. gendstat: PPN Onge.DG 0.055
  275. gendstat: Anatolia_Meso Iberia_MN 1.174
  276. gendstat: Anatolia_Meso Russia_MA1.SG 0.387
  277. gendstat: Anatolia_Meso Georgia_Satsurblia.SG 0.378
  278. gendstat: Anatolia_Meso Kostenki14.SG 0.032
  279. gendstat: Anatolia_Meso Russia_Karelia_HG 0.928
  280. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG 1.854
  281. gendstat: Anatolia_Meso Tyumen_HG -0.026
  282. gendstat: Anatolia_Meso Onge.DG 1.158
  283. gendstat: Iberia_MN Russia_MA1.SG -0.687
  284. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.659
  285. gendstat: Iberia_MN Kostenki14.SG -1.141
  286. gendstat: Iberia_MN Russia_Karelia_HG -0.047
  287. gendstat: Iberia_MN Serbia_Iron_Gates_HG 1.040
  288. gendstat: Iberia_MN Tyumen_HG -1.154
  289. gendstat: Iberia_MN Onge.DG 0.159
  290. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -0.005
  291. gendstat: Russia_MA1.SG Kostenki14.SG -0.388
  292. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.620
  293. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.524
  294. gendstat: Russia_MA1.SG Tyumen_HG -0.476
  295. gendstat: Russia_MA1.SG Onge.DG 0.831
  296. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.366
  297. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.543
  298. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.355
  299. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.415
  300. gendstat: Georgia_Satsurblia.SG Onge.DG 0.783
  301. gendstat: Kostenki14.SG Russia_Karelia_HG 0.954
  302. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 1.999
  303. gendstat: Kostenki14.SG Tyumen_HG -0.063
  304. gendstat: Kostenki14.SG Onge.DG 1.240
  305. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.918
  306. gendstat: Russia_Karelia_HG Tyumen_HG -1.105
  307. gendstat: Russia_Karelia_HG Onge.DG 0.188
  308. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -2.080
  309. gendstat: Serbia_Iron_Gates_HG Onge.DG -0.673
  310. gendstat: Tyumen_HG Onge.DG 1.295
  311.  
  312. ## end of run
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