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- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- allsnps: YES
- ## qpAdm version: 810
- seed: 1851962066
- left pops:
- Armenia_C
- Anatolia_N
- Caucasus_Eneolithic
- Georgia_Kotias.SG
- Russia_Khvalynsk_EN
- right pops:
- Mbuti.DG
- Morocco_Iberomaurusian
- Ganj_Dareh_N
- PPN
- Anatolia_Meso
- Iberia_MN
- Russia_MA1.SG
- Georgia_Satsurblia.SG
- Kostenki14.SG
- Russia_Karelia_HG
- Serbia_Iron_Gates_HG
- Tyumen_HG
- Onge.DG
- 0 Armenia_C 5
- 1 Anatolia_N 22
- 2 Caucasus_Eneolithic 3
- 3 Georgia_Kotias.SG 1
- 4 Russia_Khvalynsk_EN 3
- 5 Mbuti.DG 5
- 6 Morocco_Iberomaurusian 6
- 7 Ganj_Dareh_N 7
- 8 PPN 8
- 9 Anatolia_Meso 1
- 10 Iberia_MN 4
- 11 Russia_MA1.SG 1
- 12 Georgia_Satsurblia.SG 1
- 13 Kostenki14.SG 1
- 14 Russia_Karelia_HG 2
- 15 Serbia_Iron_Gates_HG 32
- 16 Tyumen_HG 2
- 17 Onge.DG 2
- jackknife block size: 0.050
- snps: 1150526 indivs: 106
- number of blocks for block jackknife: 552
- ## ncols: 1150526
- coverage: Armenia_C 1033326
- coverage: Anatolia_N 1134099
- coverage: Caucasus_Eneolithic 784983
- coverage: Georgia_Kotias.SG 1149097
- coverage: Russia_Khvalynsk_EN 758497
- coverage: Mbuti.DG 1150376
- coverage: Morocco_Iberomaurusian 1101342
- coverage: Ganj_Dareh_N 1029695
- coverage: PPN 835499
- coverage: Anatolia_Meso 989345
- coverage: Iberia_MN 967760
- coverage: Russia_MA1.SG 805960
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Kostenki14.SG 1048972
- coverage: Russia_Karelia_HG 1010733
- coverage: Serbia_Iron_Gates_HG 1139259
- coverage: Tyumen_HG 807474
- coverage: Onge.DG 1120748
- dof (jackknife): 467.086
- numsnps used: 1150526
- codimension 1
- f4info:
- f4rank: 3 dof: 9 chisq: 13.834 tail: 0.128356736 dofdiff: 11 chisqdiff: -13.834 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Morocco_Iberomaurusian -0.135 0.637 0.212
- Ganj_Dareh_N 0.050 -0.777 -1.713
- PPN -0.779 1.353 0.052
- Anatolia_Meso -0.947 1.702 1.159
- Iberia_MN -0.494 1.390 0.676
- Russia_MA1.SG 1.298 0.054 -0.352
- Georgia_Satsurblia.SG -0.165 -1.727 2.154
- Kostenki14.SG 0.253 0.356 -0.229
- Russia_Karelia_HG 1.969 0.432 0.747
- Serbia_Iron_Gates_HG 0.921 1.003 1.333
- Tyumen_HG 1.894 0.162 -0.132
- Onge.DG 0.373 0.003 0.230
- A:
- scale 406.904 557.989 2065.634
- Anatolia_N -0.621 0.884 0.916
- Caucasus_Eneolithic -0.173 -0.535 0.378
- Georgia_Kotias.SG -0.236 -1.697 1.564
- Russia_Khvalynsk_EN 1.879 0.230 0.757
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 13.834 taildiff: 0.128356736
- B:
- scale 1.000 1.000 1.000 1.000
- Morocco_Iberomaurusian -0.122 0.642 0.217 0.287
- Ganj_Dareh_N 0.027 -0.807 -1.507 0.436
- PPN -0.756 1.320 0.112 0.435
- Anatolia_Meso -0.909 1.687 1.191 0.975
- Iberia_MN -0.472 1.383 0.588 -0.019
- Russia_MA1.SG 1.296 0.097 -0.489 0.776
- Georgia_Satsurblia.SG -0.158 -1.685 2.537 -0.079
- Kostenki14.SG 0.260 0.369 -0.164 1.296
- Russia_Karelia_HG 1.984 0.523 0.295 -0.854
- Serbia_Iron_Gates_HG 0.945 1.057 0.926 -2.592
- Tyumen_HG 1.902 0.245 -0.462 0.907
- Onge.DG 0.378 0.024 0.216 -0.163
- A:
- scale 409.309 573.410 2017.261 7718.233
- Anatolia_N -0.626 0.959 0.801 -0.501
- Caucasus_Eneolithic -0.201 -0.552 0.100 -1.831
- Georgia_Kotias.SG -0.100 -1.650 1.752 0.122
- Russia_Khvalynsk_EN 1.886 0.232 0.527 -0.619
- best coefficients: 0.037 1.243 -0.361 0.081
- Jackknife mean: 0.066279346 1.162792306 -0.317545246 0.088473593
- std. errors: 0.113 0.299 0.167 0.036
- error covariance (* 1000000)
- 12870 -32939 17406 2663
- -32939 89651 -48979 -7733
- 17406 -48979 27812 3761
- 2663 -7733 3761 1310
- summ: Armenia_C 4 0.128357 0.066 1.163 -0.318 0.088 12870 -32939 17406 2663 89651 -48979 -7733 27812 3761 1310
- fixed pat wt dof chisq tail prob
- 0000 0 9 13.834 0.128357 0.037 1.243 -0.361 0.081 infeasible
- 0001 1 10 107.346 1.82725e-18 -0.345 2.403 -1.058 0.000 infeasible
- 0010 1 10 29.825 0.000915024 0.259 0.610 0.000 0.131
- 0100 1 10 99.047 8.45138e-17 0.477 -0.000 0.336 0.186
- 1000 1 10 17.123 0.0716808 0.000 1.350 -0.422 0.072 infeasible
- 0011 2 11 71.394 6.63157e-11 0.192 0.807 -0.000 0.001
- 0101 2 11 225.151 0 0.511 -0.000 0.489 0.000
- 0110 2 11 487.008 0 0.643 0.000 -0.000 0.357
- 1001 2 11 19.694 0.0497144 -0.000 1.437 -0.437 0.000 infeasible
- 1010 2 11 86.099 9.65046e-14 0.000 0.924 -0.000 0.076
- 1100 2 11 579.721 0 0.000 -0.000 0.967 0.033
- 0111 3 12 1119.537 0 1.000 -0.000 -0.000 0.000
- 1011 3 12 96.126 3.18451e-15 0.000 1.000 -0.000 0.000
- 1101 3 12 580.572 0 0.000 -0.000 1.000 0.000
- 1110 3 12 1710.866 0 0.000 0.000 -0.000 1.000
- best pat: 0000 0.128357 - -
- best pat: 0010 0.000915024 chi(nested): 15.991 p-value for nested model: 6.36489e-05
- best pat: 0011 6.63157e-11 chi(nested): 41.569 p-value for nested model: 1.13769e-10
- best pat: 1011 3.18451e-15 chi(nested): 24.732 p-value for nested model: 6.58951e-07
- coeffs: 0.037 1.243 -0.361 0.081
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Anatolia_N Morocco_Iberomaurusian 0.001376 7.096187
- details: Caucasus_Eneolithic Morocco_Iberomaurusian -0.000683 -2.262262
- details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.001525 -4.333879
- details: Russia_Khvalynsk_EN Morocco_Iberomaurusian -0.000188 -0.688938
- dscore: Morocco_Iberomaurusian f4: -0.000262 Z: -0.716154
- details: Anatolia_N Ganj_Dareh_N -0.001926 -9.560819
- details: Caucasus_Eneolithic Ganj_Dareh_N 0.000486 1.498086
- details: Georgia_Kotias.SG Ganj_Dareh_N 0.001208 3.292013
- details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.000546 -1.892194
- dscore: Ganj_Dareh_N f4: 0.000051 Z: 0.130846
- details: Anatolia_N PPN 0.003455 16.905870
- details: Caucasus_Eneolithic PPN -0.001017 -3.136831
- details: Georgia_Kotias.SG PPN -0.003368 -9.662720
- details: Russia_Khvalynsk_EN PPN -0.002828 -9.504237
- dscore: PPN f4: -0.000149 Z: -0.376869
- details: Anatolia_N Anatolia_Meso 0.004670 16.970480
- details: Caucasus_Eneolithic Anatolia_Meso -0.001520 -3.651245
- details: Georgia_Kotias.SG Anatolia_Meso -0.003393 -6.978633
- details: Russia_Khvalynsk_EN Anatolia_Meso -0.003225 -9.177555
- dscore: Anatolia_Meso f4: -0.000752 Z: -1.498324
- details: Anatolia_N Iberia_MN 0.003344 16.305435
- details: Caucasus_Eneolithic Iberia_MN -0.001108 -3.387568
- details: Georgia_Kotias.SG Iberia_MN -0.003256 -9.366117
- details: Russia_Khvalynsk_EN Iberia_MN -0.001402 -4.969795
- dscore: Iberia_MN f4: -0.000190 Z: -0.482205
- details: Anatolia_N Russia_MA1.SG -0.002019 -7.532599
- details: Caucasus_Eneolithic Russia_MA1.SG -0.001000 -2.696686
- details: Georgia_Kotias.SG Russia_MA1.SG -0.000872 -1.946811
- details: Russia_Khvalynsk_EN Russia_MA1.SG 0.005874 16.497253
- dscore: Russia_MA1.SG f4: -0.000525 Z: -1.131817
- details: Anatolia_N Georgia_Satsurblia.SG -0.001458 -5.451047
- details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.001796 4.974736
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.007342 14.810272
- details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.000640 -1.776861
- dscore: Georgia_Satsurblia.SG f4: -0.000528 Z: -1.152357
- details: Anatolia_N Kostenki14.SG 0.000109 0.398052
- details: Caucasus_Eneolithic Kostenki14.SG -0.001016 -2.666548
- details: Georgia_Kotias.SG Kostenki14.SG -0.001175 -2.517659
- details: Russia_Khvalynsk_EN Kostenki14.SG 0.001229 3.509664
- dscore: Kostenki14.SG f4: -0.000734 Z: -1.591589
- details: Anatolia_N Russia_Karelia_HG -0.001858 -6.978980
- details: Caucasus_Eneolithic Russia_Karelia_HG -0.001201 -2.957289
- details: Georgia_Kotias.SG Russia_Karelia_HG -0.001557 -3.279721
- details: Russia_Khvalynsk_EN Russia_Karelia_HG 0.009643 25.600895
- dscore: Russia_Karelia_HG f4: -0.000213 Z: -0.429622
- details: Anatolia_N Serbia_Iron_Gates_HG 0.000931 4.446353
- details: Caucasus_Eneolithic Serbia_Iron_Gates_HG -0.000942 -2.895547
- details: Georgia_Kotias.SG Serbia_Iron_Gates_HG -0.002367 -6.612090
- details: Russia_Khvalynsk_EN Serbia_Iron_Gates_HG 0.005301 18.118188
- dscore: Serbia_Iron_Gates_HG f4: 0.000152 Z: 0.382571
- details: Anatolia_N Tyumen_HG -0.002723 -10.650332
- details: Caucasus_Eneolithic Tyumen_HG -0.001520 -3.786169
- details: Georgia_Kotias.SG Tyumen_HG -0.001407 -3.329858
- details: Russia_Khvalynsk_EN Tyumen_HG 0.008764 23.458015
- dscore: Tyumen_HG f4: -0.000768 Z: -1.585147
- details: Anatolia_N Onge.DG -0.000364 -1.596200
- details: Caucasus_Eneolithic Onge.DG -0.000166 -0.511712
- details: Georgia_Kotias.SG Onge.DG 0.000166 0.408745
- details: Russia_Khvalynsk_EN Onge.DG 0.001908 6.301253
- dscore: Onge.DG f4: -0.000124 Z: -0.316236
- gendstat: Mbuti.DG Morocco_Iberomaurusian -0.716
- gendstat: Mbuti.DG Ganj_Dareh_N 0.131
- gendstat: Mbuti.DG PPN -0.377
- gendstat: Mbuti.DG Anatolia_Meso -1.498
- gendstat: Mbuti.DG Iberia_MN -0.482
- gendstat: Mbuti.DG Russia_MA1.SG -1.132
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.152
- gendstat: Mbuti.DG Kostenki14.SG -1.592
- gendstat: Mbuti.DG Russia_Karelia_HG -0.430
- gendstat: Mbuti.DG Serbia_Iron_Gates_HG 0.383
- gendstat: Mbuti.DG Tyumen_HG -1.585
- gendstat: Mbuti.DG Onge.DG -0.316
- gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.725
- gendstat: Morocco_Iberomaurusian PPN 0.275
- gendstat: Morocco_Iberomaurusian Anatolia_Meso -0.956
- gendstat: Morocco_Iberomaurusian Iberia_MN 0.175
- gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.538
- gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.519
- gendstat: Morocco_Iberomaurusian Kostenki14.SG -0.988
- gendstat: Morocco_Iberomaurusian Russia_Karelia_HG 0.100
- gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG 1.031
- gendstat: Morocco_Iberomaurusian Tyumen_HG -0.985
- gendstat: Morocco_Iberomaurusian Onge.DG 0.312
- gendstat: Ganj_Dareh_N PPN -0.460
- gendstat: Ganj_Dareh_N Anatolia_Meso -1.496
- gendstat: Ganj_Dareh_N Iberia_MN -0.543
- gendstat: Ganj_Dareh_N Russia_MA1.SG -1.149
- gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.158
- gendstat: Ganj_Dareh_N Kostenki14.SG -1.543
- gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.527
- gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.241
- gendstat: Ganj_Dareh_N Tyumen_HG -1.687
- gendstat: Ganj_Dareh_N Onge.DG -0.389
- gendstat: PPN Anatolia_Meso -1.241
- gendstat: PPN Iberia_MN -0.114
- gendstat: PPN Russia_MA1.SG -0.736
- gendstat: PPN Georgia_Satsurblia.SG -0.718
- gendstat: PPN Kostenki14.SG -1.156
- gendstat: PPN Russia_Karelia_HG -0.125
- gendstat: PPN Serbia_Iron_Gates_HG 0.772
- gendstat: PPN Tyumen_HG -1.168
- gendstat: PPN Onge.DG 0.055
- gendstat: Anatolia_Meso Iberia_MN 1.174
- gendstat: Anatolia_Meso Russia_MA1.SG 0.387
- gendstat: Anatolia_Meso Georgia_Satsurblia.SG 0.378
- gendstat: Anatolia_Meso Kostenki14.SG 0.032
- gendstat: Anatolia_Meso Russia_Karelia_HG 0.928
- gendstat: Anatolia_Meso Serbia_Iron_Gates_HG 1.854
- gendstat: Anatolia_Meso Tyumen_HG -0.026
- gendstat: Anatolia_Meso Onge.DG 1.158
- gendstat: Iberia_MN Russia_MA1.SG -0.687
- gendstat: Iberia_MN Georgia_Satsurblia.SG -0.659
- gendstat: Iberia_MN Kostenki14.SG -1.141
- gendstat: Iberia_MN Russia_Karelia_HG -0.047
- gendstat: Iberia_MN Serbia_Iron_Gates_HG 1.040
- gendstat: Iberia_MN Tyumen_HG -1.154
- gendstat: Iberia_MN Onge.DG 0.159
- gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -0.005
- gendstat: Russia_MA1.SG Kostenki14.SG -0.388
- gendstat: Russia_MA1.SG Russia_Karelia_HG 0.620
- gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.524
- gendstat: Russia_MA1.SG Tyumen_HG -0.476
- gendstat: Russia_MA1.SG Onge.DG 0.831
- gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.366
- gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.543
- gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.355
- gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.415
- gendstat: Georgia_Satsurblia.SG Onge.DG 0.783
- gendstat: Kostenki14.SG Russia_Karelia_HG 0.954
- gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 1.999
- gendstat: Kostenki14.SG Tyumen_HG -0.063
- gendstat: Kostenki14.SG Onge.DG 1.240
- gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.918
- gendstat: Russia_Karelia_HG Tyumen_HG -1.105
- gendstat: Russia_Karelia_HG Onge.DG 0.188
- gendstat: Serbia_Iron_Gates_HG Tyumen_HG -2.080
- gendstat: Serbia_Iron_Gates_HG Onge.DG -0.673
- gendstat: Tyumen_HG Onge.DG 1.295
- ## end of run
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