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misnomer001

indusperiphery=onge+tarim+sis

misnomer001
Jul 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: maier
  11. S1X: maier
  12. indivname: maier.ind
  13. snpname: maier.snp
  14. genotypename: maier.geno
  15. ## qpAdm version: 1520
  16. seed: 1940675670
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.9960
  20.  
  21. left pops:
  22. Indus_periphery
  23. ONG.SG
  24. Tarim_EMBA1
  25. ShahrISokhtaBA1
  26.  
  27. right pops:
  28. Mbuti.DG
  29. Ust_Ishim.DG
  30. Cpaleo
  31. WSHG
  32. EHG
  33. IG_Serbia
  34. PPN
  35. Natufian
  36. BeltCave_Iran_Meso
  37. Russia_Shamanka_Eneolithic.SG
  38. Turkey_N
  39. CHG
  40. GanjDarehN
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 2 dof: 10 chisq: 22.973 tail: 0.0108471238 dofdiff: 12 chisqdiff: -22.973 taildiff: 1
  45. B:
  46. scale 1.000 1.000
  47. Ust_Ishim.DG 0.087 -0.621
  48. Cpaleo 0.028 -1.005
  49. WSHG 2.445 -0.715
  50. EHG 2.021 -0.408
  51. IG_Serbia 0.921 0.226
  52. PPN 0.298 1.144
  53. Natufian 0.279 0.812
  54. BeltCave_Iran_Meso 0.470 1.120
  55. Russia_Shamanka_Eneolithic.SG 0.503 -1.353
  56. Turkey_N 0.360 1.017
  57. CHG 0.466 1.159
  58. GanjDarehN 0.306 1.562
  59. A:
  60. scale 67.065 89.468
  61. ONG.SG -0.783 -1.463
  62. Tarim_EMBA1 1.536 -0.699
  63. ShahrISokhtaBA1 0.165 0.610
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 22.973 taildiff: 0.0108471238
  69. B:
  70. scale 51.044 40.191 132.975
  71. Ust_Ishim.DG 0.484 0.313 -0.407
  72. Cpaleo 0.772 0.328 -0.981
  73. WSHG -0.859 2.476 0.179
  74. EHG -0.838 2.022 0.436
  75. IG_Serbia -0.679 0.819 0.730
  76. PPN -1.137 -0.075 1.189
  77. Natufian -0.842 0.022 0.889
  78. BeltCave_Iran_Meso -1.322 0.041 1.227
  79. Russia_Shamanka_Eneolithic.SG 0.845 0.916 -0.955
  80. Turkey_N -1.003 0.062 1.284
  81. CHG -1.231 0.089 1.318
  82. GanjDarehN -1.512 -0.217 1.453
  83. A:
  84. scale 1.732 1.732 1.732
  85. ONG.SG 1.732 0.000 0.000
  86. Tarim_EMBA1 0.000 1.732 0.000
  87. ShahrISokhtaBA1 0.000 0.000 1.732
  88.  
  89.  
  90. best coefficients: 0.258 0.058 0.684
  91. totmean: 0.258 0.058 0.684
  92. boot mean: 0.258 0.058 0.684
  93. std. errors: 0.011 0.010 0.010
  94.  
  95. error covariance (* 1,000,000)
  96. 112 -51 -62
  97. -51 93 -42
  98. -62 -42 104
  99.  
  100.  
  101. summ: Indus_periphery 3 0.010847 0.258 0.058 0.684 112 -51 -62 93 -42 ...
  102. 104
  103.  
  104. fixed pat wt dof chisq tail prob
  105. 000 0 10 22.973 0.0108471 0.258 0.058 0.684
  106. 001 1 11 2422.664 0 0.967 0.033 0.000
  107. 010 1 11 56.418 4.25862e-08 0.288 0.000 0.712
  108. 100 1 11 545.937 0 0.000 0.160 0.840
  109. 011 2 12 2425.789 0 1.000 0.000 0.000
  110. 101 2 12 3965.742 0 0.000 1.000 0.000
  111. 110 2 12 767.775 0 0.000 0.000 1.000
  112. best pat: 000 0.0108471 - -
  113. best pat: 010 4.25862e-08 chi(nested): 33.445 p-value for nested model: 7.33206e-09
  114. best pat: 110 1.34068e-156 chi(nested): 711.357 p-value for nested model: 1.01535e-156
  115.  
  116. coeffs: 0.258 0.058 0.684
  117.  
  118. ## dscore:: f_4(Base, Fit, Rbase, right2)
  119. ## genstat:: f_4(Base, Fit, right1, right2)
  120.  
  121. details: ONG.SG Ust_Ishim.DG 0.009478 6.490209
  122. details: Tarim_EMBA1 Ust_Ishim.DG 0.007800 6.017389
  123. details: ShahrISokhtaBA1 Ust_Ishim.DG -0.003058 -3.178394
  124. dscore: Ust_Ishim.DG f4: 0.000800 Z: 0.986907
  125.  
  126. details: ONG.SG Cpaleo 0.015123 11.571070
  127. details: Tarim_EMBA1 Cpaleo 0.008157 6.869152
  128. details: ShahrISokhtaBA1 Cpaleo -0.007380 -7.983214
  129. dscore: Cpaleo f4: -0.000682 Z: -0.833722
  130.  
  131. details: ONG.SG WSHG -0.016829 -12.553738
  132. details: Tarim_EMBA1 WSHG 0.061595 45.343757
  133. details: ShahrISokhtaBA1 WSHG 0.001343 1.340171
  134. dscore: WSHG f4: 0.000139 Z: 0.156552
  135.  
  136. details: ONG.SG EHG -0.016414 -13.342681
  137. details: Tarim_EMBA1 EHG 0.050320 38.713157
  138. details: ShahrISokhtaBA1 EHG 0.003275 3.441827
  139. dscore: EHG f4: 0.000918 Z: 1.105677
  140.  
  141. details: ONG.SG IG_Serbia -0.013294 -11.798293
  142. details: Tarim_EMBA1 IG_Serbia 0.020384 19.584108
  143. details: ShahrISokhtaBA1 IG_Serbia 0.005488 6.862379
  144. dscore: IG_Serbia f4: 0.001507 Z: 2.122652
  145.  
  146. details: ONG.SG PPN -0.022271 -17.835052
  147. details: Tarim_EMBA1 PPN -0.001855 -1.750740
  148. details: ShahrISokhtaBA1 PPN 0.008942 10.422413
  149. dscore: PPN f4: 0.000272 Z: 0.351891
  150.  
  151. details: ONG.SG Natufian -0.016502 -9.886984
  152. details: Tarim_EMBA1 Natufian 0.000551 0.366365
  153. details: ShahrISokhtaBA1 Natufian 0.006684 4.878970
  154. dscore: Natufian f4: 0.000352 Z: 0.288097
  155.  
  156. details: ONG.SG BeltCave_Iran_Meso -0.025902 -7.414966
  157. details: Tarim_EMBA1 BeltCave_Iran_Meso 0.001015 0.322320
  158. details: ShahrISokhtaBA1 BeltCave_Iran_Meso 0.009224 3.214649
  159. dscore: BeltCave_Iran_Meso f4: -0.000305 Z: -0.119018
  160.  
  161. details: ONG.SG Russia_Shamanka_Eneolithic.SG 0.016545 14.849920
  162. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.022782 21.946429
  163. details: ShahrISokhtaBA1 Russia_Shamanka_Eneolithic.SG -0.007185 -9.006324
  164. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000664 Z: 0.939714
  165.  
  166. details: ONG.SG Turkey_N -0.019649 -18.714024
  167. details: Tarim_EMBA1 Turkey_N 0.001534 1.659631
  168. details: ShahrISokhtaBA1 Turkey_N 0.009655 13.189440
  169. dscore: Turkey_N f4: 0.001632 Z: 2.500741
  170.  
  171. details: ONG.SG CHG -0.024114 -19.564301
  172. details: Tarim_EMBA1 CHG 0.002213 1.931130
  173. details: ShahrISokhtaBA1 CHG 0.009909 10.938310
  174. dscore: CHG f4: 0.000694 Z: 0.868337
  175.  
  176. details: ONG.SG GanjDarehN -0.029618 -28.145463
  177. details: Tarim_EMBA1 GanjDarehN -0.005387 -5.268920
  178. details: ShahrISokhtaBA1 GanjDarehN 0.010928 13.862296
  179. dscore: GanjDarehN f4: -0.000467 Z: -0.682194
  180.  
  181. gendstat: Mbuti.DG Ust_Ishim.DG 0.987
  182. gendstat: Mbuti.DG Cpaleo -0.834
  183. gendstat: Mbuti.DG WSHG 0.157
  184. gendstat: Mbuti.DG EHG 1.106
  185. gendstat: Mbuti.DG IG_Serbia 2.123
  186. gendstat: Mbuti.DG PPN 0.352
  187. gendstat: Mbuti.DG Natufian 0.288
  188. gendstat: Mbuti.DG BeltCave_Iran_Meso -0.119
  189. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.940
  190. gendstat: Mbuti.DG Turkey_N 2.501
  191. gendstat: Mbuti.DG CHG 0.868
  192. gendstat: Mbuti.DG GanjDarehN -0.682
  193. gendstat: Ust_Ishim.DG Cpaleo -1.609
  194. gendstat: Ust_Ishim.DG WSHG -0.669
  195. gendstat: Ust_Ishim.DG EHG 0.122
  196. gendstat: Ust_Ishim.DG IG_Serbia 0.842
  197. gendstat: Ust_Ishim.DG PPN -0.572
  198. gendstat: Ust_Ishim.DG Natufian -0.337
  199. gendstat: Ust_Ishim.DG BeltCave_Iran_Meso -0.427
  200. gendstat: Ust_Ishim.DG Russia_Shamanka_Eneolithic.SG -0.168
  201. gendstat: Ust_Ishim.DG Turkey_N 1.017
  202. gendstat: Ust_Ishim.DG CHG -0.113
  203. gendstat: Ust_Ishim.DG GanjDarehN -1.500
  204. gendstat: Cpaleo WSHG 0.866
  205. gendstat: Cpaleo EHG 1.690
  206. gendstat: Cpaleo IG_Serbia 2.674
  207. gendstat: Cpaleo PPN 1.044
  208. gendstat: Cpaleo Natufian 0.798
  209. gendstat: Cpaleo BeltCave_Iran_Meso 0.141
  210. gendstat: Cpaleo Russia_Shamanka_Eneolithic.SG 1.809
  211. gendstat: Cpaleo Turkey_N 2.835
  212. gendstat: Cpaleo CHG 1.431
  213. gendstat: Cpaleo GanjDarehN 0.254
  214. gendstat: WSHG EHG 1.040
  215. gendstat: WSHG IG_Serbia 1.936
  216. gendstat: WSHG PPN 0.149
  217. gendstat: WSHG Natufian 0.164
  218. gendstat: WSHG BeltCave_Iran_Meso -0.171
  219. gendstat: WSHG Russia_Shamanka_Eneolithic.SG 0.660
  220. gendstat: WSHG Turkey_N 1.933
  221. gendstat: WSHG CHG 0.620
  222. gendstat: WSHG GanjDarehN -0.737
  223. gendstat: EHG IG_Serbia 0.959
  224. gendstat: EHG PPN -0.803
  225. gendstat: EHG Natufian -0.451
  226. gendstat: EHG BeltCave_Iran_Meso -0.473
  227. gendstat: EHG Russia_Shamanka_Eneolithic.SG -0.326
  228. gendstat: EHG Turkey_N 1.057
  229. gendstat: EHG CHG -0.266
  230. gendstat: EHG GanjDarehN -1.799
  231. gendstat: IG_Serbia PPN -1.747
  232. gendstat: IG_Serbia Natufian -0.978
  233. gendstat: IG_Serbia BeltCave_Iran_Meso -0.708
  234. gendstat: IG_Serbia Russia_Shamanka_Eneolithic.SG -1.243
  235. gendstat: IG_Serbia Turkey_N 0.242
  236. gendstat: IG_Serbia CHG -1.099
  237. gendstat: IG_Serbia GanjDarehN -3.047
  238. gendstat: PPN Natufian 0.071
  239. gendstat: PPN BeltCave_Iran_Meso -0.225
  240. gendstat: PPN Russia_Shamanka_Eneolithic.SG 0.509
  241. gendstat: PPN Turkey_N 2.353
  242. gendstat: PPN CHG 0.518
  243. gendstat: PPN GanjDarehN -1.019
  244. gendstat: Natufian BeltCave_Iran_Meso -0.235
  245. gendstat: Natufian Russia_Shamanka_Eneolithic.SG 0.255
  246. gendstat: Natufian Turkey_N 1.139
  247. gendstat: Natufian CHG 0.269
  248. gendstat: Natufian GanjDarehN -0.670
  249. gendstat: BeltCave_Iran_Meso Russia_Shamanka_Eneolithic.SG 0.377
  250. gendstat: BeltCave_Iran_Meso Turkey_N 0.759
  251. gendstat: BeltCave_Iran_Meso CHG 0.388
  252. gendstat: BeltCave_Iran_Meso GanjDarehN -0.063
  253. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 1.517
  254. gendstat: Russia_Shamanka_Eneolithic.SG CHG 0.036
  255. gendstat: Russia_Shamanka_Eneolithic.SG GanjDarehN -1.554
  256. gendstat: Turkey_N CHG -1.387
  257. gendstat: Turkey_N GanjDarehN -3.548
  258. gendstat: CHG GanjDarehN -1.596
  259.  
  260. removing /tmp/fsx.9960
  261. ##end of qpAdm: 9.335 seconds cpu 1.040 Mbytes in use
  262.  
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