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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1759976679
- read 1073741824 bytes
- read 1350149235 bytes
- packed geno read OK
- end of inpack
- left pops:
- Steppe_Eneolithic
- Georgia_Kotias.SG
- Caucasus_Eneolithic
- Russia_Khvalynsk_EN
- Sarazm_EN
- right pops:
- Mbuti.DG
- Russia_AfontovaGora3
- EEHG
- WEHG
- Anatolia_N
- Russia_Shamanka_EN.SG
- Onge.DG
- PPN
- China_Tianyuan
- Russia_MA1_HG
- Ust_Ishim.DG
- Georgia_Satsurblia.SG
- Ganj_Dareh_N
- WSHG
- 0 Steppe_Eneolithic 3
- 1 Georgia_Kotias.SG 1
- 2 Caucasus_Eneolithic 3
- 3 Russia_Khvalynsk_EN 3
- 4 Sarazm_EN 2
- 5 Mbuti.DG 5
- 6 Russia_AfontovaGora3 1
- 7 EEHG 5
- 8 WEHG 36
- 9 Anatolia_N 23
- 10 Russia_Shamanka_EN.SG 10
- 11 Onge.DG 2
- 12 PPN 11
- 13 China_Tianyuan 1
- 14 Russia_MA1_HG 1
- 15 Ust_Ishim.DG 1
- 16 Georgia_Satsurblia.SG 1
- 17 Ganj_Dareh_N 8
- 18 WSHG 3
- jackknife block size: 0.050
- snps: 1150535 indivs: 120
- number of blocks for block jackknife: 552
- ## ncols: 1150535
- coverage: Steppe_Eneolithic 1017729
- coverage: Georgia_Kotias.SG 1149097
- coverage: Caucasus_Eneolithic 784983
- coverage: Russia_Khvalynsk_EN 758497
- coverage: Sarazm_EN 867960
- coverage: Mbuti.DG 1150376
- coverage: Russia_AfontovaGora3 265583
- coverage: EEHG 1052093
- coverage: WEHG 1141246
- coverage: Anatolia_N 1136560
- coverage: Russia_Shamanka_EN.SG 1149998
- coverage: Onge.DG 1120748
- coverage: PPN 847771
- coverage: China_Tianyuan 885079
- coverage: Russia_MA1_HG 805960
- coverage: Ust_Ishim.DG 1062044
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Ganj_Dareh_N 1057358
- coverage: WSHG 858019
- dof (jackknife): 465.608
- numsnps used: 1150535
- codimension 1
- f4info:
- f4rank: 3 dof: 10 chisq: 10.338 tail: 0.411377236 dofdiff: 12 chisqdiff: -10.338 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_AfontovaGora3 0.867 -0.022 -0.566
- EEHG 2.077 1.041 0.586
- WEHG 1.332 1.374 1.472
- Anatolia_N -0.062 0.375 1.799
- Russia_Shamanka_EN.SG 0.560 0.005 -0.816
- Onge.DG 0.315 -0.305 -0.377
- PPN -0.066 0.269 1.808
- China_Tianyuan 0.554 0.149 -0.033
- Russia_MA1_HG 1.220 -0.171 -0.480
- Ust_Ishim.DG 0.245 0.024 -0.113
- Georgia_Satsurblia.SG -0.650 2.932 -0.766
- Ganj_Dareh_N -0.338 -1.035 -1.001
- WSHG 1.830 -0.060 -1.013
- A:
- scale 342.780 1475.840 1556.581
- Georgia_Kotias.SG -1.305 1.576 -0.946
- Caucasus_Eneolithic -1.067 -0.140 1.593
- Russia_Khvalynsk_EN 0.810 0.173 0.135
- Sarazm_EN -0.708 -1.212 -0.742
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.338 taildiff: 0.411377236
- B:
- scale 253.881 288.868 453.868 379.613
- Russia_AfontovaGora3 -0.803 -1.011 0.776 -0.663
- EEHG -1.850 -1.803 2.233 -2.138
- WEHG -1.194 -0.871 1.453 -1.822
- Anatolia_N -0.163 0.501 -0.093 -0.478
- Russia_Shamanka_EN.SG -0.429 -0.764 0.532 -0.333
- Onge.DG -0.349 -0.437 0.262 -0.148
- PPN -0.190 0.520 -0.108 -0.457
- China_Tianyuan -0.564 -0.588 0.426 -0.592
- Russia_MA1_HG -1.259 -1.382 0.966 -1.027
- Ust_Ishim.DG -0.292 -0.361 0.105 -0.339
- Georgia_Satsurblia.SG 1.492 0.204 -0.716 -0.367
- Ganj_Dareh_N 0.149 -0.009 -0.582 0.686
- WSHG -1.704 -2.060 1.718 -1.406
- A:
- scale 2.000 2.000 2.000 2.000
- Georgia_Kotias.SG 2.000 0.000 0.000 0.000
- Caucasus_Eneolithic 0.000 2.000 0.000 0.000
- Russia_Khvalynsk_EN 0.000 0.000 2.000 0.000
- Sarazm_EN 0.000 0.000 0.000 2.000
- best coefficients: 0.118 0.124 0.542 0.216
- Jackknife mean: 0.119250522 0.121253588 0.543289560 0.216206330
- std. errors: 0.037 0.037 0.018 0.037
- error covariance (* 1,000,000)
- 1388 -890 113 -611
- -890 1386 -99 -397
- 113 -99 315 -329
- -611 -397 -329 1337
- summ: Steppe_Eneolithic 4 0.411377 0.119 0.121 0.543 0.216 1388 -890 113 -611 1386 ...
- -99 -397 315 -329 1337
- fixed pat wt dof chisq tail prob
- 0000 0 10 10.338 0.411377 0.118 0.124 0.542 0.216
- 0001 1 11 41.922 1.67111e-05 0.233 0.169 0.598 0.000
- 0010 1 11 217.748 0 -4.655 2.598 0.000 3.057 infeasible
- 0100 1 11 21.044 0.032922 0.199 0.000 0.551 0.250
- 1000 1 11 21.526 0.0283161 0.000 0.195 0.534 0.271
- 0011 2 12 263.823 0 -39.231 40.231 0.000 0.000 infeasible
- 0101 2 12 57.152 7.42013e-08 0.381 0.000 0.619 0.000
- 0110 2 12 264.169 0 -3.335 0.000 0.000 4.335 infeasible
- 1001 2 12 76.675 1.77033e-11 0.000 0.403 0.597 0.000
- 1010 2 12 398.299 0 0.000 -2.619 0.000 3.619 infeasible
- 1100 2 12 61.484 1.20895e-08 0.000 0.000 0.540 0.460
- 0111 3 13 746.400 0 1.000 0.000 0.000 0.000
- 1011 3 13 794.673 0 0.000 1.000 0.000 0.000
- 1101 3 13 502.488 0 0.000 0.000 1.000 0.000
- 1110 3 13 566.791 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.411377 - -
- best pat: 0100 0.032922 chi(nested): 10.706 p-value for nested model: 0.00106797
- best pat: 1100 1.20895e-08 chi(nested): 40.441 p-value for nested model: 2.02664e-10
- best pat: 1101 4.33428e-99 chi(nested): 441.004 p-value for nested model: 6.56035e-98
- coeffs: 0.118 0.124 0.542 0.216
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Georgia_Kotias.SG Russia_AfontovaGora3 -0.003163 -12.754156
- details: Caucasus_Eneolithic Russia_AfontovaGora3 -0.003499 -13.078037
- details: Russia_Khvalynsk_EN Russia_AfontovaGora3 0.001709 7.237814
- details: Sarazm_EN Russia_AfontovaGora3 -0.001747 -7.054117
- dscore: Russia_AfontovaGora3 f4: -0.000258 Z: -1.439899
- details: Georgia_Kotias.SG EEHG -0.007285 -15.987183
- details: Caucasus_Eneolithic EEHG -0.006243 -15.904881
- details: Russia_Khvalynsk_EN EEHG 0.004921 14.544935
- details: Sarazm_EN EEHG -0.005631 -16.003845
- dscore: EEHG f4: -0.000182 Z: -0.681428
- details: Georgia_Kotias.SG WEHG -0.004702 -12.638177
- details: Caucasus_Eneolithic WEHG -0.003016 -8.736427
- details: Russia_Khvalynsk_EN WEHG 0.003201 10.703462
- details: Sarazm_EN WEHG -0.004799 -16.287645
- dscore: WEHG f4: -0.000229 Z: -1.014740
- details: Georgia_Kotias.SG Anatolia_N -0.000641 -1.951784
- details: Caucasus_Eneolithic Anatolia_N 0.001735 5.669204
- details: Russia_Khvalynsk_EN Anatolia_N -0.000206 -0.841496
- details: Sarazm_EN Anatolia_N -0.001258 -5.009948
- dscore: Anatolia_N f4: -0.000243 Z: -1.288048
- details: Georgia_Kotias.SG Russia_Shamanka_EN.SG -0.001689 -4.751367
- details: Caucasus_Eneolithic Russia_Shamanka_EN.SG -0.002645 -7.998546
- details: Russia_Khvalynsk_EN Russia_Shamanka_EN.SG 0.001171 4.311559
- details: Sarazm_EN Russia_Shamanka_EN.SG -0.000877 -2.952240
- dscore: Russia_Shamanka_EN.SG f4: -0.000082 Z: -0.392896
- details: Georgia_Kotias.SG Onge.DG -0.001374 -3.308508
- details: Caucasus_Eneolithic Onge.DG -0.001513 -4.229982
- details: Russia_Khvalynsk_EN Onge.DG 0.000577 1.952484
- details: Sarazm_EN Onge.DG -0.000389 -1.135680
- dscore: Onge.DG f4: -0.000121 Z: -0.486730
- details: Georgia_Kotias.SG PPN -0.000747 -2.209419
- details: Caucasus_Eneolithic PPN 0.001801 5.427996
- details: Russia_Khvalynsk_EN PPN -0.000238 -0.850994
- details: Sarazm_EN PPN -0.001204 -4.052905
- dscore: PPN f4: -0.000253 Z: -1.192071
- details: Georgia_Kotias.SG China_Tianyuan -0.002223 -4.680413
- details: Caucasus_Eneolithic China_Tianyuan -0.002035 -4.660121
- details: Russia_Khvalynsk_EN China_Tianyuan 0.000939 2.600834
- details: Sarazm_EN China_Tianyuan -0.001561 -4.129979
- dscore: China_Tianyuan f4: -0.000342 Z: -1.213204
- details: Georgia_Kotias.SG Russia_MA1_HG -0.004959 -10.402368
- details: Caucasus_Eneolithic Russia_MA1_HG -0.004784 -11.686393
- details: Russia_Khvalynsk_EN Russia_MA1_HG 0.002128 5.933179
- details: Sarazm_EN Russia_MA1_HG -0.002705 -7.072848
- dscore: Russia_MA1_HG f4: -0.000609 Z: -2.180292
- details: Georgia_Kotias.SG Ust_Ishim.DG -0.001150 -2.590952
- details: Caucasus_Eneolithic Ust_Ishim.DG -0.001249 -3.225968
- details: Russia_Khvalynsk_EN Ust_Ishim.DG 0.000232 0.776485
- details: Sarazm_EN Ust_Ishim.DG -0.000892 -2.503845
- dscore: Ust_Ishim.DG f4: -0.000358 Z: -1.505560
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.722201
- details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.000706 1.802913
- details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.001577 -4.822702
- details: Sarazm_EN Georgia_Satsurblia.SG -0.000966 -2.829823
- dscore: Georgia_Satsurblia.SG f4: -0.000285 Z: -1.154546
- details: Georgia_Kotias.SG Ganj_Dareh_N 0.000586 1.583957
- details: Caucasus_Eneolithic Ganj_Dareh_N -0.000031 -0.095369
- details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.001282 -4.976471
- details: Sarazm_EN Ganj_Dareh_N 0.001807 6.141893
- dscore: Ganj_Dareh_N f4: -0.000239 Z: -1.184923
- details: Georgia_Kotias.SG WSHG -0.006711 -16.205559
- details: Caucasus_Eneolithic WSHG -0.007132 -16.701628
- details: Russia_Khvalynsk_EN WSHG 0.003785 10.536432
- details: Sarazm_EN WSHG -0.003703 -9.900553
- dscore: WSHG f4: -0.000424 Z: -1.478431
- gendstat: Mbuti.DG Russia_AfontovaGora3 -1.440
- gendstat: Mbuti.DG EEHG -0.681
- gendstat: Mbuti.DG WEHG -1.015
- gendstat: Mbuti.DG Anatolia_N -1.288
- gendstat: Mbuti.DG Russia_Shamanka_EN.SG -0.393
- gendstat: Mbuti.DG Onge.DG -0.487
- gendstat: Mbuti.DG PPN -1.192
- gendstat: Mbuti.DG China_Tianyuan -1.213
- gendstat: Mbuti.DG Russia_MA1_HG -2.180
- gendstat: Mbuti.DG Ust_Ishim.DG -1.506
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.155
- gendstat: Mbuti.DG Ganj_Dareh_N -1.185
- gendstat: Mbuti.DG WSHG -1.478
- gendstat: Russia_AfontovaGora3 EEHG 0.286
- gendstat: Russia_AfontovaGora3 WEHG 0.115
- gendstat: Russia_AfontovaGora3 Anatolia_N 0.063
- gendstat: Russia_AfontovaGora3 Russia_Shamanka_EN.SG 0.756
- gendstat: Russia_AfontovaGora3 Onge.DG 0.498
- gendstat: Russia_AfontovaGora3 PPN 0.021
- gendstat: Russia_AfontovaGora3 China_Tianyuan -0.278
- gendstat: Russia_AfontovaGora3 Russia_MA1_HG -1.283
- gendstat: Russia_AfontovaGora3 Ust_Ishim.DG -0.361
- gendstat: Russia_AfontovaGora3 Georgia_Satsurblia.SG -0.092
- gendstat: Russia_AfontovaGora3 Ganj_Dareh_N 0.075
- gendstat: Russia_AfontovaGora3 WSHG -0.612
- gendstat: EEHG WEHG -0.222
- gendstat: EEHG Anatolia_N -0.252
- gendstat: EEHG Russia_Shamanka_EN.SG 0.401
- gendstat: EEHG Onge.DG 0.200
- gendstat: EEHG PPN -0.271
- gendstat: EEHG China_Tianyuan -0.512
- gendstat: EEHG Russia_MA1_HG -1.576
- gendstat: EEHG Ust_Ishim.DG -0.567
- gendstat: EEHG Georgia_Satsurblia.SG -0.314
- gendstat: EEHG Ganj_Dareh_N -0.213
- gendstat: EEHG WSHG -0.966
- gendstat: WEHG Anatolia_N -0.080
- gendstat: WEHG Russia_Shamanka_EN.SG 0.666
- gendstat: WEHG Onge.DG 0.403
- gendstat: WEHG PPN -0.109
- gendstat: WEHG China_Tianyuan -0.392
- gendstat: WEHG Russia_MA1_HG -1.394
- gendstat: WEHG Ust_Ishim.DG -0.489
- gendstat: WEHG Georgia_Satsurblia.SG -0.186
- gendstat: WEHG Ganj_Dareh_N -0.043
- gendstat: WEHG WSHG -0.752
- gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.808
- gendstat: Anatolia_N Onge.DG 0.519
- gendstat: Anatolia_N PPN -0.061
- gendstat: Anatolia_N China_Tianyuan -0.357
- gendstat: Anatolia_N Russia_MA1_HG -1.326
- gendstat: Anatolia_N Ust_Ishim.DG -0.466
- gendstat: Anatolia_N Georgia_Satsurblia.SG -0.159
- gendstat: Anatolia_N Ganj_Dareh_N 0.019
- gendstat: Anatolia_N WSHG -0.654
- gendstat: Russia_Shamanka_EN.SG Onge.DG -0.184
- gendstat: Russia_Shamanka_EN.SG PPN -0.748
- gendstat: Russia_Shamanka_EN.SG China_Tianyuan -1.028
- gendstat: Russia_Shamanka_EN.SG Russia_MA1_HG -1.935
- gendstat: Russia_Shamanka_EN.SG Ust_Ishim.DG -1.145
- gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -0.718
- gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -0.744
- gendstat: Russia_Shamanka_EN.SG WSHG -1.306
- gendstat: Onge.DG PPN -0.523
- gendstat: Onge.DG China_Tianyuan -0.756
- gendstat: Onge.DG Russia_MA1_HG -1.554
- gendstat: Onge.DG Ust_Ishim.DG -0.882
- gendstat: Onge.DG Georgia_Satsurblia.SG -0.525
- gendstat: Onge.DG Ganj_Dareh_N -0.484
- gendstat: Onge.DG WSHG -0.963
- gendstat: PPN China_Tianyuan -0.303
- gendstat: PPN Russia_MA1_HG -1.215
- gendstat: PPN Ust_Ishim.DG -0.393
- gendstat: PPN Georgia_Satsurblia.SG -0.113
- gendstat: PPN Ganj_Dareh_N 0.061
- gendstat: PPN WSHG -0.573
- gendstat: China_Tianyuan Russia_MA1_HG -0.804
- gendstat: China_Tianyuan Ust_Ishim.DG -0.051
- gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.167
- gendstat: China_Tianyuan Ganj_Dareh_N 0.353
- gendstat: China_Tianyuan WSHG -0.260
- gendstat: Russia_MA1_HG Ust_Ishim.DG 0.782
- gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 0.969
- gendstat: Russia_MA1_HG Ganj_Dareh_N 1.287
- gendstat: Russia_MA1_HG WSHG 0.666
- gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 0.237
- gendstat: Ust_Ishim.DG Ganj_Dareh_N 0.450
- gendstat: Ust_Ishim.DG WSHG -0.212
- gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 0.172
- gendstat: Georgia_Satsurblia.SG WSHG -0.413
- gendstat: Ganj_Dareh_N WSHG -0.636
- ##end of qpAdm: 264.962 seconds cpu 1478.193 Mbytes in use
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