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  1. 2018-08-18T16:52:06.454950 tid3784 [IFO,LogManager] Enabled primary log file C:\Program Files\Micro-Manager-2.0gamma\CoreLogs\CoreLog20180818T165206_pid11480.txt
  2. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] User: peter
  3. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] Host: Neptune
  4. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] MM Studio version: 2.0.0-gamma1 20180803
  5. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] MMCore version 8.7.1
  6. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] Device API version 69, Module API version 10
  7. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] Operating System: Windows 10 (amd64) 10.0
  8. 2018-08-18T16:52:06.454950 tid3784 [IFO,App] JVM: Java HotSpot(TM) 64-Bit Server VM, version 1.8.0_152, 64-bit
  9. 2018-08-18T16:52:06.457949 tid3784 [IFO,App] EDTHangLogger: Started monitoring of EDT hangs
  10. [ ] [heartbeat timeout = 4500 ms, hang check interval = 1000 ms]
  11. 2018-08-18T16:52:06.473940 tid6548 [IFO,App] Searching for plugins in C:\Program Files\Micro-Manager-2.0gamma/mmplugins
  12. 2018-08-18T16:52:06.621855 tid6548 [IFO,App] Found plugin org.micromanager.acquiremultipleregions.AcquireMultipleRegions@b3cd0bc
  13. 2018-08-18T16:52:06.624853 tid6548 [IFO,App] Found plugin org.micromanager.asidispim.ASIdiSPIM@71ddc559
  14. 2018-08-18T16:52:06.625852 tid6548 [IFO,App] Found plugin ch.epfl.leb.autolase.AutoLasePlugin@f653357
  15. 2018-08-18T16:52:06.625852 tid6548 [IFO,App] Found plugin org.micromanager.CRISP.CRISP@2c027dc2
  16. 2018-08-18T16:52:06.626852 tid6548 [IFO,App] Found plugin com.asiimaging.CRISPv2.ASI_CRISP_V2@6b928b53
  17. 2018-08-18T16:52:06.626852 tid6548 [IFO,App] Found plugin org.micromanager.duplicator.DuplicatorPlugin@54c1078e
  18. 2018-08-18T16:52:06.626852 tid6548 [IFO,App] Found plugin org.micromanager.plugins.framecombiner.FrameCombinerPlugin@3aee7677
  19. 2018-08-18T16:52:06.627851 tid6548 [IFO,App] Found plugin GaussianTrack_@223a382
  20. 2018-08-18T16:52:06.627851 tid6548 [IFO,App] Found plugin org.micromanager.hcs.HCSPlugin@43c2a3f
  21. 2018-08-18T16:52:06.627851 tid6548 [IFO,App] Found plugin org.micromanager.imageflipper.FlipperPlugin@6d144365
  22. 2018-08-18T16:52:06.627851 tid6548 [IFO,App] Found plugin org.micromanager.intelligentacquisition.IntelligentAcquisition@13dd3477
  23. 2018-08-18T16:52:06.628851 tid6548 [IFO,App] Found plugin edu.ucsf.valelab.mmclearvolumeplugin.CVPlugin@76d599e1
  24. 2018-08-18T16:52:06.628851 tid6548 [IFO,App] Found plugin edu.ucsf.valelab.mmclearvolumeplugin.CVInspectorPanelPlugin@6478aaf3
  25. 2018-08-18T16:52:06.628851 tid6548 [IFO,App] Found plugin com.imaging100x.tracker.TrackerPlugin@3e383d0c
  26. 2018-08-18T16:52:06.628851 tid6548 [IFO,App] Found plugin org.micromanager.multicamera.MultiCamera@e9bfc60
  27. 2018-08-18T16:52:06.628851 tid6548 [IFO,App] Found plugin org.micromanager.multichannelshading.MultiChannelShading@72c5bc07
  28. 2018-08-18T16:52:06.629850 tid6548 [IFO,App] Found plugin edu.umassmed.pgfocus.pgFocus@7d4db9a6
  29. 2018-08-18T16:52:06.630849 tid6548 [IFO,App] Found plugin org.micromanager.pipelinesaver.SaverPlugin@22b7078c
  30. 2018-08-18T16:52:06.630849 tid6548 [IFO,App] Found plugin org.micromanager.projector.ProjectorPlugin@2c0e7b0b
  31. 2018-08-18T16:52:06.630849 tid6548 [IFO,App] Found plugin org.micromanager.ptctools.PtcTools@21a2d7a4
  32. 2018-08-18T16:52:06.630849 tid6548 [IFO,App] Found plugin org.micromanager.ratioimaging.RatioImaging@31b2dabf
  33. 2018-08-18T16:52:06.631849 tid6548 [IFO,App] Found plugin org.micromanager.recall.RecallPlugin@26bebb8e
  34. 2018-08-18T16:52:06.631849 tid6548 [IFO,App] Found plugin org.micromanager.plugins.sequencebuffermonitor.SequenceBufferMonitor@5153669f
  35. 2018-08-18T16:52:06.631849 tid6548 [IFO,App] Found plugin org.micromanager.slideexplorer.SlideExplorerPlugin@ec8d65
  36. 2018-08-18T16:52:06.632848 tid6548 [IFO,App] Found plugin org.micromanager.plugins.snaponmove.SnapOnMovePlugin@3bbedacd
  37. 2018-08-18T16:52:06.632848 tid6548 [IFO,App] Found plugin org.micromanager.splitview.SplitView@688f64ff
  38. 2018-08-18T16:52:06.632848 tid6548 [IFO,App] Found plugin PMQI.AutoWB@222280ef
  39. 2018-08-18T16:52:06.632848 tid6548 [IFO,App] Found plugin org.micromanager.zprojector.ZProjectorPlugin@46c1a66b
  40. 2018-08-18T16:52:06.632848 tid6548 [IFO,App] Searching for plugins in C:\Program Files\Micro-Manager-2.0gamma/mmautofocus
  41. 2018-08-18T16:52:06.649838 tid6548 [IFO,App] Found plugin org.micromanager.autofocus.HardwareFocusExtender@4dc75183
  42. 2018-08-18T16:52:06.652837 tid6548 [IFO,App] Found plugin org.micromanager.autofocus.Autofocus@2998d10c
  43. 2018-08-18T16:52:06.652837 tid6548 [IFO,App] Found plugin org.micromanager.autofocus.AutofocusDuo@4b996128
  44. 2018-08-18T16:52:06.653836 tid6548 [IFO,App] Found plugin org.micromanager.autofocus.AutofocusTB@5bebfc99
  45. 2018-08-18T16:52:06.655835 tid6548 [IFO,App] Found plugin org.micromanager.autofocus.OughtaFocus@60be4ab8
  46. 2018-08-18T16:52:06.656835 tid6548 [IFO,App] Searching for plugins in class loader
  47. 2018-08-18T16:52:07.093584 tid6548 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.intensity.IntensityInspectorPanelPlugin@54dbdfd7
  48. 2018-08-18T16:52:07.093584 tid6548 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.metadata.SummaryMetadataInspectorPanelPlugin@44cc7566
  49. 2018-08-18T16:52:07.093584 tid6548 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.metadata.PlaneMetadataInspectorPanelPlugin@258f617c
  50. 2018-08-18T16:52:07.093584 tid6548 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.comments.CommentsInspectorPanelPlugin@44f68a6b
  51. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.PatternOverlayPlugin@37c3e373
  52. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.overlays.OverlaysInspectorPanelPlugin@47968232
  53. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.ScaleBarPlugin@47cdb96d
  54. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.TimestampPlugin@61af662a
  55. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.acquisition.internal.DefaultMDAPlugin@49dfc917
  56. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.internal.gearmenu.ExportImagesItem@3aab450c
  57. 2018-08-18T16:52:07.094584 tid6548 [IFO,App] Found plugin org.micromanager.display.internal.gearmenu.LineProfileItem@100795e5
  58. 2018-08-18T16:52:07.096583 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.AutofocusButtons@62ab7284
  59. 2018-08-18T16:52:07.096583 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.CloseAllButton@41ed2bbe
  60. 2018-08-18T16:52:07.097582 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ExposureTime@749439ee
  61. 2018-08-18T16:52:07.098581 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.LiveButton@5240999b
  62. 2018-08-18T16:52:07.099581 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.MDAButtons@1a4e9ebc
  63. 2018-08-18T16:52:07.100580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.PresetButton@44cf94c4
  64. 2018-08-18T16:52:07.100580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.RefreshButton@2a1a499f
  65. 2018-08-18T16:52:07.100580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.SavedMDAButton@57fec33
  66. 2018-08-18T16:52:07.101580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ScriptButton@20eea527
  67. 2018-08-18T16:52:07.101580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ShutterControl@5a8adb7d
  68. 2018-08-18T16:52:07.101580 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.SnapButton@4fd139fe
  69. 2018-08-18T16:52:07.102579 tid6548 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.TextLabel@430c524a
  70. 2018-08-18T16:52:07.102579 tid6548 [IFO,App] Plugin loading took 629ms
  71. 2018-08-18T16:52:07.102579 tid3784 [IFO,App] Finished waiting for plugins to load
  72. 2018-08-18T16:52:08.952519 tid3784 [IFO,Core] Did unload all devices
  73. 2018-08-18T16:52:08.953518 tid3784 [IFO,Core] Did unload all devices
  74. 2018-08-18T16:52:09.185385 tid3784 [IFO,Core] Did load device Grasshopper3 GS3-U3-41C6C_15307349 from PointGrey; label = Grasshopper3 GS3-U3-41C6C_15307349
  75. 2018-08-18T16:52:09.185385 tid3784 [IFO,Core] Will initialize 1 devices
  76. 2018-08-18T16:52:09.185385 tid3784 [IFO,Core] Will initialize device Grasshopper3 GS3-U3-41C6C_15307349
  77. 2018-08-18T16:52:09.185385 tid3784 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] FlyCapture2_v100.dll version number is 2.10.3.266
  78. 2018-08-18T16:52:09.517194 tid3784 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 0 is available
  79. 2018-08-18T16:52:09.518194 tid3784 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 1 is available
  80. 2018-08-18T16:52:09.519193 tid3784 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 2 is available
  81. 2018-08-18T16:52:09.646120 tid3784 [IFO,Core] Did initialize device Grasshopper3 GS3-U3-41C6C_15307349
  82. 2018-08-18T16:52:09.646120 tid3784 [IFO,Core] Default camera set to Grasshopper3 GS3-U3-41C6C_15307349
  83. 2018-08-18T16:52:09.646120 tid3784 [IFO,Core] Finished initializing 1 devices
  84. 2018-08-18T16:52:09.646120 tid3784 [IFO,Core] Default camera set to Grasshopper3 GS3-U3-41C6C_15307349
  85. 2018-08-18T16:52:09.651118 tid3784 [IFO,Core] Did update system state cache
  86. 2018-08-18T16:52:10.511625 tid3784 [IFO,App] Rebuilding config group table
  87. 2018-08-18T16:52:10.511625 tid3784 [IFO,App] Finished rebuilding config group table
  88. 2018-08-18T16:52:10.523618 tid3784 [IFO,App] Startup script (C:\Program Files\Micro-Manager-2.0gamma\MMStartup.bsh) not present
  89. 2018-08-18T16:52:10.523618 tid3784 [IFO,App] Updating GUI; config pad = true; from cache = false
  90. 2018-08-18T16:52:10.528615 tid3784 [IFO,App] Rebuilding config group table
  91. 2018-08-18T16:52:10.528615 tid3784 [IFO,App] Finished rebuilding config group table
  92. 2018-08-18T16:52:10.533613 tid3784 [IFO,Core] Did update system state cache
  93. 2018-08-18T16:52:10.533613 tid3784 [IFO,App] Finished updating GUI
  94. 2018-08-18T16:52:13.640830 tid3784 [IFO,App] Class: class org.micromanager.display.internal.displaywindow.DisplayController
  95. 2018-08-18T16:52:13.640830 tid3784 [IFO,App] Classloader: ij.io.PluginClassLoader@23a5fd2
  96. 2018-08-18T16:52:13.681807 tid3784 [IFO,App] Failed to find affine transform
  97. [ ] java.lang.Exception: "": Configuration group not defined in Thread[AWT-EventQueue-0,6,main]
  98. [ ] at mmcorej.MMCoreJJNI.CMMCore_getPixelSizeAffine__SWIG_1(Native Method)
  99. [ ] at mmcorej.CMMCore.getPixelSizeAffine(CMMCore.java:794)
  100. [ ] at org.micromanager.internal.navigation.CenterAndDragListener.getOrientation(CenterAndDragListener.java:116)
  101. [ ] at org.micromanager.internal.navigation.CenterAndDragListener.<init>(CenterAndDragListener.java:62)
  102. [ ] at org.micromanager.internal.navigation.UiMovesStageManager.activate(UiMovesStageManager.java:63)
  103. [ ] at org.micromanager.internal.SnapLiveManager.createDisplay(SnapLiveManager.java:500)
  104. [ ] at org.micromanager.internal.SnapLiveManager.createOrResetDatastoreAndDisplay(SnapLiveManager.java:759)
  105. [ ] at org.micromanager.internal.SnapLiveManager.displayImage(SnapLiveManager.java:669)
  106. [ ] at org.micromanager.internal.SnapLiveManager$2.run(SnapLiveManager.java:429)
  107. [ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
  108. [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
  109. [ ] at java.awt.EventQueue.access$500(EventQueue.java:97)
  110. [ ] at java.awt.EventQueue$3.run(EventQueue.java:709)
  111. [ ] at java.awt.EventQueue$3.run(EventQueue.java:703)
  112. [ ] at java.security.AccessController.doPrivileged(Native Method)
  113. [ ] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
  114. [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
  115. [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
  116. [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
  117. [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
  118. [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
  119. [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
  120. [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
  121. 2018-08-18T16:52:19.727342 tid3784 [IFO,App] Class: class org.micromanager.display.internal.displaywindow.DisplayController
  122. 2018-08-18T16:52:19.727342 tid3784 [IFO,App] Classloader: ij.io.PluginClassLoader@23a5fd2
  123. 2018-08-18T16:52:19.799300 tid3784 [IFO,App] Error: IntensityInspectorPanelController: Viewer is unexpectedly null
  124. 2018-08-18T16:52:26.580412 tid3784 [IFO,App] Setting value 100 at row 19
  125. 2018-08-18T16:52:26.580412 tid3784 [IFO,App] Grasshopper3 GS3-U3-41C6C_15307349/Saturation(%):100
  126. 2018-08-18T16:52:26.586409 tid3784 [IFO,Core] Did update system state cache
  127. 2018-08-18T16:52:26.587409 tid3784 [IFO,App] Updating GUI; config pad = true; from cache = true
  128. 2018-08-18T16:52:26.664365 tid3784 [IFO,App] Rebuilding config group table
  129. 2018-08-18T16:52:26.664365 tid3784 [IFO,App] Finished rebuilding config group table
  130. 2018-08-18T16:52:26.737323 tid3784 [IFO,App] Finished updating GUI
  131. 2018-08-18T16:52:27.884665 tid3784 [IFO,App] Setting value RGB32 at row 18
  132. 2018-08-18T16:52:27.884665 tid3784 [IFO,App] Grasshopper3 GS3-U3-41C6C_15307349/PixelType:RGB32
  133. 2018-08-18T16:52:28.104539 tid3784 [IFO,Core] Did update system state cache
  134. 2018-08-18T16:52:28.105538 tid3784 [IFO,App] Updating GUI; config pad = true; from cache = true
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