bcl2fastq container

FROM continuumio/miniconda3

# Install python
RUN conda create -n env python=3.9
RUN echo "source activate env" > ~/.bashrc
ENV PATH /opt/conda/envs/env/bin:$PATH

# Copy files from current directory into container
COPY ./bcl2fastq.py .
COPY ./setup.py .

# Installation
RUN python setup.py install