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  1. import argparse
  2.  
  3. from . import parse
  4.  
  5. from . import analysis
  6.  
  7.  
  8. LOC="uniprot_receptor.xml.gz"
  9.  
  10. def dump(args):
  11.     for record in parse.uniprot_seqrecords(LOC):
  12.         print(record)
  13.  
  14.  
  15.  
  16. def names(args):
  17.     for record in parse.uniprot_seqrecords(LOC):
  18.         print(record.name)
  19.  
  20.  
  21.  
  22. def average(args):
  23.     print("Average Length is {}".format(
  24.         analysis.average_len(parse.uniprot_seqrecords(LOC))))
  25.  
  26.  
  27.  
  28.  
  29.  
  30.  
  31. def cli():
  32.  
  33.     # create a new parser
  34.  
  35.     parser  = argparse.ArgumentParser(prog="uniplot")
  36.  
  37.     subparsers = parser.add_subparsers(help="Sub Command Help")
  38.  
  39.     ## add subparsers
  40.  
  41.     subparsers.add_parser("dump").set_defaults(func=dump)
  42.     subparsers.add_parser("list").set_defaults(func=names)
  43.     subparsers.add_parser("average").set_defaults(func=average)
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