View difference between Paste ID: aMt4Zxud and TsmpHKXg

-beenish@beenishU:~/shogun-3.0.0/build$ sudo make
+beenish@beenishU:~/shogun-3.0.0/build$ sudo cmake -DCMAKE_VERBOSE_MAKEFILE=ON ..
-[sudo] password for beenish:
+-- The C compiler identification is GNU 4.6.3
-[  0%] Built target python_doxy2swig
+-- The CXX compiler identification is GNU 4.6.3
-[  0%] copying SWIG files
+-- Check for working C compiler: /usr/bin/cc
-[  0%] Built target python_modular_src
+-- Check for working C compiler: /usr/bin/cc -- works
-[  1%] Built target class_list
+-- Detecting C compiler ABI info
-[  2%] Generating version header
+-- Detecting C compiler ABI info - done
-[  2%] Built target version
+-- Check for working CXX compiler: /usr/bin/c++
-[ 84%] Built target shogun
+-- Check for working CXX compiler: /usr/bin/c++ -- works
-[ 84%] Built target _python_modular
+-- Detecting CXX compiler ABI info
-Linking CXX executable balanced_conditional_probability_tree
+-- Detecting CXX compiler ABI info - done
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_INT16_g'
+-- Found CCache: /usr/bin/ccache
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sselect_elements'
+-- Performing Test _HAS_CXX11_FLAG
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dread'
+-- Performing Test _HAS_CXX11_FLAG - Failed
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sget_simple_extent_ndims'
+-- Performing Test _HAS_CXX0X_FLAG
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_SCHAR_g'
+-- Performing Test _HAS_CXX0X_FLAG - Success
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_INT64_g'
+-- Your compiler cannot expand a variadic template parameter into a fixed-length argument list.
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Eset_auto2'
+-- Checking C++11 support for "__func__"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Screate_simple'
+-- Checking C++11 support for "__func__": works
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aget_type'
+-- Checking C++11 support for "atomic"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Fcreate'
+-- Checking C++11 support for "atomic": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_UCHAR_g'
+-- Checking C++11 support for "auto"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Screate'
+-- Checking C++11 support for "auto": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tget_size'
+-- Checking C++11 support for "auto_ret_type"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tcreate'
+-- Checking C++11 support for "auto_ret_type": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_UINT16_g'
+-- Checking C++11 support for "class_override_final"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dwrite'
+-- Checking C++11 support for "class_override_final": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_STD_REF_OBJ_g'
+-- Checking C++11 support for "constexpr"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tvlen_create'
+-- Checking C++11 support for "constexpr": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Awrite'
+-- Checking C++11 support for "cstdint"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Fclose'
+-- Checking C++11 support for "cstdint": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_LDOUBLE_g'
+-- Checking C++11 support for "decltype"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aexists'
+-- Checking C++11 support for "decltype": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tinsert'
+-- Checking C++11 support for "initializer_list"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tequal'
+-- Checking C++11 support for "initializer_list": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Gclose'
+-- Checking C++11 support for "lambda"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5check_version'
+-- Checking C++11 support for "lambda": works
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aopen'
+-- Checking C++11 support for "long_long"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dget_space'
+-- Checking C++11 support for "long_long": works
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tget_class'
+-- Checking C++11 support for "nullptr"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_C_S1_g'
+-- Checking C++11 support for "nullptr": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sget_simple_extent_npoints'
+-- Checking C++11 support for "regex"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Gcreate2'
+-- Checking C++11 support for "regex": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_UINT64_g'
+-- Checking C++11 support for "rvalue-references"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aget_space'
+-- Checking C++11 support for "rvalue-references": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tcopy'
+-- Checking C++11 support for "sizeof_member"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sselect_none'
+-- Checking C++11 support for "sizeof_member": works
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tclose'
+-- Checking C++11 support for "static_assert"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_UINT8_g'
+-- Checking C++11 support for "static_assert": not supported
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_ULLONG_g'
+-- Checking C++11 support for "variadic_templates"
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Rcreate'
+-- Checking C++11 support for "variadic_templates": works
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_UINT32_g'
+-- Using system's malloc
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_LLONG_g'
+-- Looking for log2
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sclose'
+-- Looking for log2 - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dopen2'
+-- Looking for powl
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dget_type'
+-- Looking for powl - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_DOUBLE_g'
+-- Looking for lgammal
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aread'
+-- Looking for lgammal - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dclose'
+-- Looking for sqrtl
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5open'
+-- Looking for sqrtl - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_FLOAT_g'
+-- Looking for xmmintrin.h
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_HBOOL_g'
+-- Looking for xmmintrin.h - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sget_simple_extent_dims'
+-- Looking for emmintrin.h
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Gopen2'
+-- Looking for emmintrin.h - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dcreate2'
+-- Found GDB: /usr/bin/gdb
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_INT8_g'
+-- Could NOT find MOSEK (missing:  MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY)
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Fopen'
+-- Looking for include file pthread.h
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_INT32_g'
+-- Looking for include file pthread.h - found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sget_simple_extent_type'
+-- Looking for pthread_create
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Aclose'
+-- Looking for pthread_create - not found
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Tset_size'
+-- Looking for pthread_create in pthreads
-../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Acreate2'
+-- Looking for pthread_create in pthreads - not found
-collect2: ld returned 1 exit status
+-- Looking for pthread_create in pthread
-make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1
+-- Looking for pthread_create in pthread - found
-make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2
+-- Found Threads: TRUE
-make: *** [all] Error 2
+-- Try OpenMP C flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Try OpenMP CXX flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Found OpenMP: -fopenmp
 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
 -- Looking for dgemm_
 -- Looking for dgemm_ - found
 -- A library with BLAS API found.
 -- Looking for cheev_
 -- Looking for cheev_ - found
 -- A library with LAPACK API found.
 -- Looking for clapack_dpotrf in /usr/lib/liblapack_atlas.so
 -- Looking for clapack_dpotrf in /usr/lib/liblapack_atlas.so - found
 -- Found ATLAS: /usr/lib/liblapack_atlas.so;/usr/lib/libcblas.so;/usr/lib/atlas-base/libf77blas.so;/usr/lib/libatlas.so;/usr/lib/liblapack.so
 -- Found GLPK: /usr/lib/libglpk.so
 -- Could NOT find CPLEX (missing:  CPLEX_LIBRARY CPLEX_INCLUDE_DIR)
 -- Found Arpack : /usr/lib/libarpack.so
 -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.1.2", minimum required is "3.1.2")
 -- checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9'
 -- Found NLOPT: /usr/lib/libnlopt.so
 -- Found LPSOLVE: /usr/lib/liblpsolve55.a
 -- Could NOT find ColPack (missing:  COLPACK_LIBRARIES COLPACK_LIBRARY_DIR COLPACK_INCLUDE_DIR)
 -- Could NOT find ARPREC (missing:  ARPREC_LIBRARIES)
 -- Found Doxygen: /usr/bin/doxygen (found version "1.7.6.1")
 -- Found PythonInterp: /usr/bin/python (found version "2.7.3")
 -- checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11'
 -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.7.8")
 -- Found HDF5: /usr/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libm.so
 -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "7.22.0")
 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.3.4")
 -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
 -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so
 -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found
 -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so
 -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found
 -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so
 -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found
 -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so
 -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so - found
 -- Found LibLZMA: /usr/include (found version "5.1.0")
 -- Found SNAPPY: /usr/lib/libsnappy.so
 -- Lzo Library /usr/lib/x86_64-linux-gnu/liblzo2.so
 -- Lzo Include Found in /usr/include
 -- Spinlock support found
 -- ===================================================================================================================
 -- Summary of Configuration Variables
 --
 -- The following OPTIONAL packages have been found:
 
  * CCache
  * GDB
  * OpenMP
  * BLAS
  * Threads
  * LAPACK
  * Atlas
  * GLPK
  * ARPACK
  * Eigen3 (required version >= 3.1.2)
  * NLopt
  * LpSolve
  * Doxygen
  * LibXml2
  * HDF5
  * CURL
  * ZLIB
  * BZip2
  * LibLZMA
  * SNAPPY
  * LZO
  * Spinlock
 
 -- The following REQUIRED packages have been found:
 
  * PythonInterp
 
 -- The following OPTIONAL packages have not been found:
 
  * Mosek
  * CPLEX
  * ColPack
  * ARPREC
 
 -- ===================================================================================================================
 -- Enabled Interfaces
 --   libshogun is ON
 --   python modular is OFF 	 - enable with -DPythonModular=ON
 --   octave modular is OFF 	 - enable with -DOctaveModular=ON
 --   java modular is OFF 	 - enable with -DJavaModular=ON
 --   perl modular is OFF 	 - enable with -DPerlModular=ON
 --   ruby modular is OFF 	 - enable with -DRubyModular=ON
 --   csharp modular is OFF 	 - enable with -DCSharpModular=ON
 --   R modular is OFF 		 - enable with -DRModular=ON
 --   lua modular is OFF 	 - enable with -DLuaModular=ON
 --
 -- Enabled legacy interfaces
 --   cmdline static is OFF 	 - enable with -DCmdLineStatic=ON
 --   python static is OFF 	 - enable with -DPythonStatic=ON
 --   octave static is OFF 	 - enable with -DOctaveStatic=ON
 --   matlab static is OFF 	 - enable with -DMatlabStatic=ON
 --   R static is OFF 		 - enable with -DRStatic=ON
 -- ===================================================================================================================
 -- To compile shogun type
 --   make
 --
 -- To install shogun to /usr/local type
 --   make install
 --
 -- or to install to a custom directory
 --   make install DESTDIR=/my/special/path
 --   (or rerun cmake with -DCMAKE_INSTALL_PREFIX=/my/special/path) to just change the prefix
 -- ===================================================================================================================
 -- Configuring done
 -- Generating done
 -- Build files have been written to: /home/beenish/shogun-3.0.0/build