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- :: Checking neuron integrity...
- ==> Making package: neuron 7.4-1 (Thu Jun 9 23:12:50 CDT 2016)
- ==> Retrieving sources...
- -> Found nrn-7.4.tar.gz
- ==> Validating source files with md5sums...
- nrn-7.4.tar.gz ... Passed
- :: Building neuron package(s)...
- ==> Making package: neuron 7.4-1 (Thu Jun 9 23:12:51 CDT 2016)
- ==> Checking runtime dependencies...
- ==> Checking buildtime dependencies...
- ==> Retrieving sources...
- -> Found nrn-7.4.tar.gz
- ==> Validating source files with md5sums...
- nrn-7.4.tar.gz ... Passed
- ==> Extracting sources...
- -> Extracting nrn-7.4.tar.gz with bsdtar
- ==> Removing existing $pkgdir/ directory...
- ==> Starting build()...
- checking for a BSD-compatible install... /usr/bin/install -c
- checking whether build environment is sane... yes
- checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
- checking for gawk... gawk
- checking whether make sets $(MAKE)... yes
- checking whether make supports nested variables... yes
- checking build system type... x86_64-unknown-linux-gnu
- checking host system type... x86_64-unknown-linux-gnu
- CYGWIN=no
- MINGW=no
- checking for style of include used by make... GNU
- checking for g++... g++
- checking whether the C++ compiler works... yes
- checking for C++ compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether we are using the GNU C++ compiler... yes
- checking whether g++ accepts -g... yes
- checking dependency style of g++... gcc3
- Not trying to build rpms for your system (use --enable-rpm-rules to override)
- checking for gcc... gcc
- checking whether we are using the GNU C compiler... yes
- checking whether gcc accepts -g... yes
- checking for gcc option to accept ISO C89... none needed
- checking whether gcc understands -c and -o together... yes
- checking dependency style of gcc... gcc3
- checking how to run the C preprocessor... gcc -E
- checking for gawk... (cached) gawk
- checking for flex... flex
- checking lex output file root... lex.yy
- checking lex library... -lfl
- checking whether yytext is a pointer... yes
- checking for bison... bison -y
- checking whether ln -s works... yes
- checking for cos in -lm... yes
- Python binary found (/home/dan/.pyenv/shims/python)
- checking nrnpython configuration... get_python_version() '3.5'
- sys.version_info[0] '3'
- get_python_inc(0) '/usr/include/python3.5m'
- get_config_var('LIBS') '-lpthread -ldl -lutil'
- get_config_var('LIBRARY') 'libpython3.5m.a'
- get_config_var('LIBDIR') '/usr/lib'
- get_config_var('LIBS') '-lpthread -ldl -lutil'
- checking if python include files and libraries work... yes
- checking for python... python
- checking for cython... no
- checking for cython... cython
- checking for mpicc... mpicc
- checking for MPI_Init... yes
- checking for mpi.h... yes
- checking for mpic++... mpic++
- checking for mpi.h... yes
- checking how to print strings... printf
- checking for a sed that does not truncate output... /usr/bin/sed
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for fgrep... /usr/bin/grep -F
- checking for ld used by mpicc... /usr/lib/hardening-wrapper/bin/ld
- checking if the linker (/usr/lib/hardening-wrapper/bin/ld) is GNU ld... yes
- checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
- checking the name lister (/usr/bin/nm -B) interface... BSD nm
- checking the maximum length of command line arguments... 1572864
- checking whether the shell understands some XSI constructs... yes
- checking whether the shell understands "+="... yes
- checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
- checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
- checking for /usr/lib/hardening-wrapper/bin/ld option to reload object files... -r
- checking for objdump... objdump
- checking how to recognize dependent libraries... pass_all
- checking for dlltool... no
- checking how to associate runtime and link libraries... printf %s\n
- checking for ar... ar
- checking for archiver @FILE support... @
- checking for strip... strip
- checking for ranlib... ranlib
- checking command to parse /usr/bin/nm -B output from mpicc object... ok
- checking for sysroot... no
- checking for mt... no
- checking if : is a manifest tool... no
- checking for ANSI C header files... yes
- checking for sys/types.h... yes
- checking for sys/stat.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for memory.h... yes
- checking for strings.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for unistd.h... yes
- checking for dlfcn.h... yes
- checking for objdir... .libs
- checking if mpicc supports -fno-rtti -fno-exceptions... no
- checking for mpicc option to produce PIC... -fPIC -DPIC
- checking if mpicc PIC flag -fPIC -DPIC works... yes
- checking if mpicc static flag -static works... no
- checking if mpicc supports -c -o file.o... yes
- checking if mpicc supports -c -o file.o... (cached) yes
- checking whether the mpicc linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking whether -lc should be explicitly linked in... no
- checking dynamic linker characteristics... GNU/Linux ld.so
- checking how to hardcode library paths into programs... immediate
- checking for shl_load... no
- checking for shl_load in -ldld... no
- checking for dlopen... no
- checking for dlopen in -ldl... yes
- checking whether a program can dlopen itself... yes
- checking whether a statically linked program can dlopen itself... yes
- checking whether stripping libraries is possible... yes
- checking if libtool supports shared libraries... yes
- checking whether to build shared libraries... yes
- checking whether to build static libraries... no
- checking how to run the C++ preprocessor... mpic++ -E
- checking for ld used by mpic++... /usr/lib/hardening-wrapper/bin/ld -m elf_x86_64
- checking if the linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) is GNU ld... yes
- checking whether the mpic++ linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking for mpic++ option to produce PIC... -fPIC -DPIC
- checking if mpic++ PIC flag -fPIC -DPIC works... yes
- checking if mpic++ static flag -static works... no
- checking if mpic++ supports -c -o file.o... yes
- checking if mpic++ supports -c -o file.o... (cached) yes
- checking whether the mpic++ linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking dynamic linker characteristics... (cached) GNU/Linux ld.so
- checking how to hardcode library paths into programs... immediate
- configure: Use the NRNMECH_DLL_STYLE for "special"
- checking for tgetent in -lncurses... yes
- checking which library has the termcap functions... using libncurses
- checking checking compilation with -lreadline... ok
- Do not compile neosim specific code.
- Not building the nrnjava interface
- checking for X... libraries , headers
- checking for gethostbyname... yes
- checking for connect... yes
- checking for remove... yes
- checking for shmat... yes
- checking for IceConnectionNumber in -lICE... yes
- checking for dirent.h that defines DIR... yes
- checking for library containing opendir... none required
- checking for ANSI C header files... (cached) yes
- checking for sys/wait.h that is POSIX.1 compatible... yes
- checking fcntl.h usability... yes
- checking fcntl.h presence... yes
- checking for fcntl.h... yes
- checking limits.h usability... yes
- checking limits.h presence... yes
- checking for limits.h... yes
- checking malloc.h usability... yes
- checking malloc.h presence... yes
- checking for malloc.h... yes
- checking sgtty.h usability... yes
- checking sgtty.h presence... yes
- checking for sgtty.h... yes
- checking for strings.h... (cached) yes
- checking sys/file.h usability... yes
- checking sys/file.h presence... yes
- checking for sys/file.h... yes
- checking sys/ioctl.h usability... yes
- checking sys/ioctl.h presence... yes
- checking for sys/ioctl.h... yes
- checking sys/time.h usability... yes
- checking sys/time.h presence... yes
- checking for sys/time.h... yes
- checking termio.h usability... yes
- checking termio.h presence... yes
- checking for termio.h... yes
- checking for unistd.h... (cached) yes
- checking stdarg.h usability... yes
- checking stdarg.h presence... yes
- checking for stdarg.h... yes
- checking varargs.h usability... no
- checking varargs.h presence... no
- checking for varargs.h... no
- checking stropts.h usability... yes
- checking stropts.h presence... yes
- checking for stropts.h... yes
- checking sys/conf.h usability... no
- checking sys/conf.h presence... no
- checking for sys/conf.h... no
- checking locale.h usability... yes
- checking locale.h presence... yes
- checking for locale.h... yes
- checking fenv.h usability... yes
- checking fenv.h presence... yes
- checking for fenv.h... yes
- checking pthread.h usability... yes
- checking pthread.h presence... yes
- checking for pthread.h... yes
- configure: Using pthreads.
- checking for the pthreads library -lpthreads... no
- checking whether pthreads work without any flags... yes
- checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
- checking if more special flags are required for pthreads... no
- configure: successful.
- PTHREAD_LIBS=
- PTHREAD_CFLAGS=
- PTHREAD_CC=mpicc
- checking float.h usability... yes
- checking float.h presence... yes
- checking for float.h... yes
- checking math.h usability... yes
- checking math.h presence... yes
- checking for math.h... yes
- checking stream.h usability... no
- checking stream.h presence... no
- checking for stream.h... no
- checking for off_t... yes
- checking for pid_t... yes
- checking for size_t... yes
- checking for int64_t... yes
- checking whether byte ordering is bigendian... no
- checking whether time.h and sys/time.h may both be included... yes
- checking whether struct tm is in sys/time.h or time.h... time.h
- checking for working alloca.h... yes
- checking for alloca... yes
- checking for working memcmp... yes
- checking return type of signal handlers... void
- checking for vprintf... yes
- checking for _doprnt... no
- checking for ftime... yes
- checking for getcwd... yes
- checking for getpw... yes
- checking for gethostname... yes
- checking for gettimeofday... yes
- checking for mkdir... yes
- checking for putenv... yes
- checking for setenv... yes
- checking for select... yes
- checking for strdup... yes
- checking for strstr... yes
- checking for index... yes
- checking for bzero... yes
- checking for bcopy... yes
- checking for stty... no
- checking for lockf... yes
- checking for isatty... yes
- checking for mkstemp... yes
- checking for setitimer... yes
- checking for sigaction... yes
- checking for fesetround... yes
- checking for posix_memalign... yes
- checking for mallinfo... yes
- checking if SIGBUS defined in signal.h... yes
- checking if SIGSEGV defined in signal.h... yes
- checking whether we are using the GNU C++ compiler... (cached) yes
- checking whether mpic++ accepts -g... (cached) yes
- checking dependency style of mpic++... (cached) gcc3
- checking _G_config.h usability... yes
- checking _G_config.h presence... yes
- checking for _G_config.h... yes
- checking whether the compiler implements namespaces... yes
- checking whether the compiler has stringstream... yes
- Looking for InterViews in the usual places--
- not in
- Assuming InterViews in a standard? place.
- checking compilation with interviews... failed
- I can't compile and/or link an interviews program. If InterViews is not
- installed in /usr or /usr/local or /usr/local/iv,
- specify the proper location of the interviews tree using
- configure --with-iv=/where/you/put/iv
- The interviews headers should be in subdirectories of
- /where/you/put/iv/include, and the libraries should be in
- /where/you/put/iv/lib or /where/you/put/iv/x86_64/lib
- (not in /where/you/put/iv/lib/ALPHA or
- /where/you/put/iv/lib/LINUX or some other subdirectory of lib).
- If you don't want interviews, but do want nrniv built with the non-gui
- c++ classes then specify configure --without-iv.
- ==> ERROR: A failure occurred in build().
- Aborting...
- :: failed to build neuron package(s)
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