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steppe_en=ehg+chg+wshg fail

misnomer001
Aug 7th, 2023
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  1. qpAdm: parameter file: parqpAdm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: ste4
  5. indivname: ste4.ind
  6. snpname: ste4.snp
  7. genotypename: ste4.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1637562707
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.3070
  18.  
  19. left pops:
  20. Russia_Steppe_Eneolithic
  21. EHG
  22. CHG
  23. WSHG
  24.  
  25. right pops:
  26. Mbuti.DG
  27. Morocco_Iberomaurusian
  28. GEO_Dzudzuana_UP
  29. Russia_MA1_HG.SG
  30. Italy_North_Villabruna_HG
  31. ONG.SG
  32. Turkey_Epipaleolithic
  33. Iran_ShahrISokhta_BA2
  34. Russia_Caucasus_Eneolithic
  35. Tajikistan_C_Sarazm
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 2 dof: 7 chisq: 42.289 tail: 4.57414141e-07 dofdiff: 9 chisqdiff: -42.289 taildiff: 1
  40. B:
  41. scale 1.000 1.000
  42. Morocco_Iberomaurusian 0.140 0.320
  43. GEO_Dzudzuana_UP -0.159 0.655
  44. Russia_MA1_HG.SG 2.472 -0.766
  45. Italy_North_Villabruna_HG 1.079 2.372
  46. ONG.SG 0.568 -0.416
  47. Turkey_Epipaleolithic -0.076 1.161
  48. Iran_ShahrISokhta_BA2 0.117 -0.472
  49. Russia_Caucasus_Eneolithic -1.157 0.450
  50. Tajikistan_C_Sarazm 0.023 -0.556
  51. A:
  52. scale 107.072 291.100
  53. EHG 0.902 1.205
  54. CHG -0.953 -0.378
  55. WSHG 1.131 -1.185
  56.  
  57.  
  58. full rank
  59. f4info:
  60. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 42.289 taildiff: 4.57414141e-07
  61. B:
  62. scale 114.474 95.273 89.355
  63. Morocco_Iberomaurusian 0.201 -0.272 -0.033
  64. GEO_Dzudzuana_UP -0.027 -0.206 -0.561
  65. Russia_MA1_HG.SG 1.893 -2.195 2.485
  66. Italy_North_Villabruna_HG 1.948 -1.554 -0.026
  67. ONG.SG 0.415 -0.417 0.685
  68. Turkey_Epipaleolithic 0.222 -0.425 -0.710
  69. Iran_ShahrISokhta_BA2 -0.419 -0.418 0.061
  70. Russia_Caucasus_Eneolithic -0.854 0.961 -1.235
  71. Tajikistan_C_Sarazm -0.673 -0.447 -0.083
  72. A:
  73. scale 1.732 1.732 1.732
  74. EHG 1.732 0.000 0.000
  75. CHG 0.000 1.732 0.000
  76. WSHG 0.000 0.000 1.732
  77.  
  78.  
  79. best coefficients: 0.325 0.507 0.168
  80. totmean: 0.325 0.507 0.168
  81. boot mean: 0.324 0.507 0.168
  82. std. errors: 0.058 0.026 0.051
  83.  
  84. error covariance (* 1,000,000)
  85. 3422 -711 -2711
  86. -711 650 60
  87. -2711 60 2651
  88.  
  89.  
  90. summ: Russia_Steppe_Eneolithic 3 0.000000 0.324 0.507 0.168 3422 -711 -2711 650 60 ...
  91. 2651
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 000 0 7 42.289 4.57414e-07 0.325 0.507 0.168
  95. 001 1 8 54.996 4.4229e-09 0.491 0.509 0.000
  96. 010 1 8 295.405 0 3.915 0.000 -2.915 infeasible
  97. 100 1 8 78.105 1.17587e-13 0.000 0.575 0.425
  98. 011 2 9 394.685 0 1.000 0.000 0.000
  99. 101 2 9 302.335 0 0.000 1.000 0.000
  100. 110 2 9 516.738 0 0.000 0.000 1.000
  101. best pat: 000 4.57414e-07 - -
  102. best pat: 100 1.17587e-13 chi(nested): 35.815 p-value for nested model: 2.16917e-09
  103. best pat: 101 8.34442e-60 chi(nested): 224.230 p-value for nested model: 1.0807e-50
  104.  
  105. coeffs: 0.325 0.507 0.168
  106.  
  107. ## dscore:: f_4(Base, Fit, Rbase, right2)
  108. ## genstat:: f_4(Base, Fit, right1, right2)
  109.  
  110. details: EHG Morocco_Iberomaurusian 0.001758 1.794377
  111. details: CHG Morocco_Iberomaurusian -0.002859 -2.558203
  112. details: WSHG Morocco_Iberomaurusian -0.000374 -0.340450
  113. dscore: Morocco_Iberomaurusian f4: -0.000942 Z: -1.136196
  114.  
  115. details: EHG GEO_Dzudzuana_UP -0.000237 -0.137760
  116. details: CHG GEO_Dzudzuana_UP -0.002161 -1.082457
  117. details: WSHG GEO_Dzudzuana_UP -0.006279 -3.314327
  118. dscore: GEO_Dzudzuana_UP f4: -0.002230 Z: -1.483982
  119.  
  120. details: EHG Russia_MA1_HG.SG 0.016539 10.486066
  121. details: CHG Russia_MA1_HG.SG -0.023038 -13.037658
  122. details: WSHG Russia_MA1_HG.SG 0.027806 15.704666
  123. dscore: Russia_MA1_HG.SG f4: -0.001631 Z: -1.262546
  124.  
  125. details: EHG Italy_North_Villabruna_HG 0.017020 11.183754
  126. details: CHG Italy_North_Villabruna_HG -0.016308 -9.401952
  127. details: WSHG Italy_North_Villabruna_HG -0.000290 -0.174112
  128. dscore: Italy_North_Villabruna_HG f4: -0.002794 Z: -2.188714
  129.  
  130. details: EHG ONG.SG 0.003625 3.353049
  131. details: CHG ONG.SG -0.004372 -3.664162
  132. details: WSHG ONG.SG 0.007670 6.358597
  133. dscore: ONG.SG f4: 0.000251 Z: 0.281278
  134.  
  135. details: EHG Turkey_Epipaleolithic 0.001938 1.407133
  136. details: CHG Turkey_Epipaleolithic -0.004457 -2.805206
  137. details: WSHG Turkey_Epipaleolithic -0.007945 -5.286105
  138. dscore: Turkey_Epipaleolithic f4: -0.002969 Z: -2.542324
  139.  
  140. details: EHG Iran_ShahrISokhta_BA2 -0.003656 -3.830593
  141. details: CHG Iran_ShahrISokhta_BA2 -0.004384 -3.888469
  142. details: WSHG Iran_ShahrISokhta_BA2 0.000684 0.658054
  143. dscore: Iran_ShahrISokhta_BA2 f4: -0.003295 Z: -3.948019
  144.  
  145. details: EHG Russia_Caucasus_Eneolithic -0.007458 -5.417305
  146. details: CHG Russia_Caucasus_Eneolithic 0.010088 5.884826
  147. details: WSHG Russia_Caucasus_Eneolithic -0.013824 -9.256827
  148. dscore: Russia_Caucasus_Eneolithic f4: 0.000367 Z: 0.296530
  149.  
  150. details: EHG Tajikistan_C_Sarazm -0.005876 -4.815192
  151. details: CHG Tajikistan_C_Sarazm -0.004691 -3.324583
  152. details: WSHG Tajikistan_C_Sarazm -0.000927 -0.677514
  153. dscore: Tajikistan_C_Sarazm f4: -0.004442 Z: -4.236244
  154.  
  155. gendstat: Mbuti.DG Morocco_Iberomaurusian -1.136
  156. gendstat: Mbuti.DG GEO_Dzudzuana_UP -1.484
  157. gendstat: Mbuti.DG Russia_MA1_HG.SG -1.263
  158. gendstat: Mbuti.DG Italy_North_Villabruna_HG -2.189
  159. gendstat: Mbuti.DG ONG.SG 0.281
  160. gendstat: Mbuti.DG Turkey_Epipaleolithic -2.542
  161. gendstat: Mbuti.DG Iran_ShahrISokhta_BA2 -3.948
  162. gendstat: Mbuti.DG Russia_Caucasus_Eneolithic 0.297
  163. gendstat: Mbuti.DG Tajikistan_C_Sarazm -4.236
  164. gendstat: Morocco_Iberomaurusian GEO_Dzudzuana_UP -0.855
  165. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG -0.503
  166. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG -1.446
  167. gendstat: Morocco_Iberomaurusian ONG.SG 1.165
  168. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -1.720
  169. gendstat: Morocco_Iberomaurusian Iran_ShahrISokhta_BA2 -2.448
  170. gendstat: Morocco_Iberomaurusian Russia_Caucasus_Eneolithic 1.016
  171. gendstat: Morocco_Iberomaurusian Tajikistan_C_Sarazm -3.044
  172. gendstat: GEO_Dzudzuana_UP Russia_MA1_HG.SG 0.337
  173. gendstat: GEO_Dzudzuana_UP Italy_North_Villabruna_HG -0.347
  174. gendstat: GEO_Dzudzuana_UP ONG.SG 1.644
  175. gendstat: GEO_Dzudzuana_UP Turkey_Epipaleolithic -0.463
  176. gendstat: GEO_Dzudzuana_UP Iran_ShahrISokhta_BA2 -0.734
  177. gendstat: GEO_Dzudzuana_UP Russia_Caucasus_Eneolithic 1.528
  178. gendstat: GEO_Dzudzuana_UP Tajikistan_C_Sarazm -1.383
  179. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG -0.764
  180. gendstat: Russia_MA1_HG.SG ONG.SG 1.433
  181. gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.877
  182. gendstat: Russia_MA1_HG.SG Iran_ShahrISokhta_BA2 -1.376
  183. gendstat: Russia_MA1_HG.SG Russia_Caucasus_Eneolithic 1.217
  184. gendstat: Russia_MA1_HG.SG Tajikistan_C_Sarazm -2.007
  185. gendstat: Italy_North_Villabruna_HG ONG.SG 2.321
  186. gendstat: Italy_North_Villabruna_HG Turkey_Epipaleolithic -0.123
  187. gendstat: Italy_North_Villabruna_HG Iran_ShahrISokhta_BA2 -0.396
  188. gendstat: Italy_North_Villabruna_HG Russia_Caucasus_Eneolithic 1.993
  189. gendstat: Italy_North_Villabruna_HG Tajikistan_C_Sarazm -1.189
  190. gendstat: ONG.SG Turkey_Epipaleolithic -2.651
  191. gendstat: ONG.SG Iran_ShahrISokhta_BA2 -4.395
  192. gendstat: ONG.SG Russia_Caucasus_Eneolithic 0.088
  193. gendstat: ONG.SG Tajikistan_C_Sarazm -4.173
  194. gendstat: Turkey_Epipaleolithic Iran_ShahrISokhta_BA2 -0.285
  195. gendstat: Turkey_Epipaleolithic Russia_Caucasus_Eneolithic 2.353
  196. gendstat: Turkey_Epipaleolithic Tajikistan_C_Sarazm -1.103
  197. gendstat: Iran_ShahrISokhta_BA2 Russia_Caucasus_Eneolithic 3.045
  198. gendstat: Iran_ShahrISokhta_BA2 Tajikistan_C_Sarazm -1.185
  199. gendstat: Russia_Caucasus_Eneolithic Tajikistan_C_Sarazm -3.682
  200.  
  201. removing /tmp/fsx.3070
  202. ##end of qpAdm: 6.861 seconds cpu 0.385 Mbytes in use
  203.  
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