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Low%:

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Part 1: Getting a Bomb Bag through BiT

-Start the run in file 3
-BiT (F3)
-Lantern
-Save Talo
-Goats
-Iron Boots
-Hyrule Castle
-S+S Skip
-Get Vessel of Light and start collecting bugs on the way to EMS jump
-EMS
-Save in Grove for early clawshot later (F3)
-Savewarp immediately after beating skullkid
-Leave Grove and jump off three times
-Hit yes on Game Over prompt
-Finish the Twilight
-Get Small Key from Coro
-Push the Monkey (try to get as many rupees as possible here so you can skip some in GM to save time)
-Steal Oil
-Roll up to and enter Forest Temple
-Head to the main bridge (kill big spider)
-Turn back
-Get Ooccoo
-Ooccoo out
-Go back through the fog
-Head to the Ordon Bridge
-Save and do BiTE (F2)
-Fight KB1
-Savewarp in Kak (F1) and load Ordon Bridge file (F2)
-BiTE again (F2) and set Early Monkeys Flag
-Load Kak file (F1)
-Kill Kak messengers to open the Portal
-Ooccoo back
-Get Gale Boomerang
-Savewarp
-Ooccoo out
-Go back through the fog again
-Forest Escape

-Enter Eldin Twilight
-Map Warping
-Forced Warp to North Faron
-Warp to Kakariko
-Clear Eldin Twilight
-Get 30 rupees up on the ledge before 'Goron-Bo' (R30)
-Wrestle the Elder and enter Goron Mines
 
-Run through the 2 flames and LJA towards the gate
-Jump down to small key chest and hop across spinning platforms (Iron Boots on/off after each hop)
-Pull back the chain 3 times and roll clip into the wall
-Get the first keyshard from the first Goron Elder
-Open the small 20-rupee chest behind the first Goron Elder (R50)
-Climb ladder and walk on magnetic ceilings
-Get small key in tektite room and skip pushing underwater block, hit switch, Iron Boots
-Open the small 20-rupee chest by the switch (LJA the pipe. Don't walk w/ Iron Boots) (R70)
-Skip the second Goron Elder (LJA to miniboss)
-Early Miniboss
-Get Hero's Bow, shoot rope, quick scope Beamo, pull back two times, flame boost and head through door
-Get the final keyshard from the third Goron Elder and open the 50 rupee chest behind him (R120)
-LJA over by the bulblin archers
-Beat Fyrus
 
-Roll to Barnes, enter and buy the Bomb Bag (R0)
-Ooccoo back to Forest
-Leave Forest
-Bomb Boost to Sacred Grove
-Roll through the Grove
-Puzzle Skip with LJAs
-Master Sword

-Warp to Kak
-Take Epona and ride her out North
-Map Glitch
-LJA Hover to enter Lanayru Twilight
-Dash to the ZD Shortcut
-Blow up all the rocks by using bomb arrows 
-ZD Portal (3 hearts)
-Leave and jump from the domain as human (1 heart)
-Dash back to UZR
-LJA across and enter Izas hut
-Kill yourself with bomb arrows to spawn in Lake Hylia
-Savewarp if you want to use the backup pillar clip setup
-Pillar Clip
-Savewarp, load the Grove file (F3) and howl to set the early boss flag
-Load Lakebed file (F1)
(By this point your bomb bag needs to be EMPTY!)
-Get Waterbombs from the entrance chest
-Head to Deku Toad (don't turn the bridge!)
-Use Bomb Arrow to stun Toad, then do 5 MS slashes and use another bomb arrow to 0 cycle
-Early Clawshot
-Savewarp
-Head back to the main room
-Clawshot over and grab Ooccoo
-Ooccoo out
-Kagarok Skip
-Map Warp out of the Kagarok Flight to DM
-Warp the Meteor to ZD

-Rutella Skip
-Lanayru Twilight
-Leave the last tear after beating the boss bug and Ooccoo back
-Morpheel with Waterbombs
-Savewarp to Lake Hylia
-Clear Lanayru Twilight
-Warp to Castle Town
-Finish MDH

-Warp to ZD
-Head to Iza
-Use transform glitch to fight the Messengers as Wolf (Video:    )
-Get Izas Bag #1 (stores bow ; adds lent bag)
-Warp to UZR
-Get Izas Bag #2 (stores bow ; stores lent bag ; replaces bow with empty item; lent bag becomes empty)
-Talk to Iza again to refill the empty lent bag (important!)
-Warp to UZR
-Get Izas Bag #3 (stores empty item ; stores lent bag with 30 regular bombs)

-Warp to South Faron
-BiT on Ordon Bridge
-Jump off the bridge to clear the Title Screen
-Save (F1)
-Jump off the bridge again to Game Over
-Reset and skip the cutscene to set the Early Monkeys Flag
-Load File 1


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Part 2: The actual Low% Run:

-Lantern
-Save in the mist area in case you get bad RNG
-Skip Small Key and clip through the North Faron gate with a Blue Rupee (RNG) from one of the two Bokoblins
-Earliest Forest Temple by blowing up the Rocks
-Kill spiders with nuts/skip them
-Gale Boomerang (pull and drop a bomb near Ook to 1 cycle him)
-Savewarp
-Grab Ooccoo
-Ooccoo out
-Bomb Boost to Sacred Grove
-Bonk the central tree from the back until a Blue Rupee drops (can reset the area infinite times)
-Stand very close to the gate and Gale the Rupee for a fast clip
-Chase Skullkid as Human (can use Gale + Bombs to hit him very early the 2nd and 3rd time)
-Skullkid Fight & Puzzle Skip with LJAs (grab 100R from the chest) (R100)
-Master Sword
-Ooccoo back
-Ooccoo out
-Rescue Talo

-Goats 2
-Iron Boots
-Enter Sewers to gain Midna on Z function
-Watch ghost soldier cs after leaving the prison to gain X Sense ability
-Transform Human
-Ooccoo back
-Ooccoo out
-Deathwarp to South Faron (can use bombs)
-Get Midna Charge
-Open South Faron Portal
-Forest Escape
-Map Warping (fail Gorge Void)
-Warp South Faron
-Lanayru Gate Clip
-Pillar Clip
-Savewarp through the tunnel
-Bomb Bag needs to be empty at this point
-Grab Waterbombs
-Early Clawshot (don't turn the bridge!)
-Savewarp
-Head back to the main room
-Clawshot over and grab Ooccoo
-Ooccoo out

-Zoras Domain Portal
-Ooccoo back and Ooccoo out
-Pillar Clip again
-Save and do BiTE on this file
-KB 1
-Enter House and leave to spawn Messengers
-Kakariko Portal
-Eldin Twilight
-Skip DM Portal with clawshot
-Finish Eldin Twilight
-Backtrack up DM as Wolf to dodge the Gorons
-Skip Meteor cs by going back to previous area fast enough
-Warp the Meteor

-Lanayru Vessel
-Lake Hylia Portal and bugs
-Get Fyer Bug asap
-Warp Kakariko
-Call and ride Epona out North
-Map Glitch and put Epona OoB (fall down a bit using the void floor)
-Savewarp
-Epona OoB to Castle Town (east bridge entrance)
-Get Castle Town bug
-Warp Zoras Domain
-Other bugs
-Take the Kagarok from Izas and collect remaining tears
-Leave the last tear after beating the boss bug and Ooccoo back
-Morpheel with Waterbombs
-Savewarp to Lake Hylia
-Clear Lanayru Twilight
-Shoot up the Cannon
-Finish MDH

-Warp ZD
-Enter Snowpeak
-Howl at the Snowpeak Stone to spawn Wolf in Kak Graveyard
-Skip Snowpeak Portal and do Blind Snowboarding
-Enter SPR
-Midna Superjump up the platform
-Double LJA to the door
-Go to the next room through the unlocked door
-Push the block and jump down
-Solve the Ice Block Puzzle
-Bomb Boost up the ledge
-LJA over
-Freezard Skip
-B&C
-Grab the 100R from the back room (R200)
-Savewarp
-Grab 100R from the Lobby (R300)
-Leave Snowpeak

-Warp Lake Hylia
-Memo
-Desert
-Camp Skip
-Enter AG
-Watch the Poe cs, grab the pot with the Blue Rupee and clip the gate skipping all 4 Poes
-Grab Bombs from the chest before Stalfos (if less than 6)!
-Death Sword 1 cycle with MS
-Spinner
-Backtrack through AG
-Boss Key
-Stallord
-Mirror Chamber Portal

-Warp Kakariko
-Cannon to Lake Hylia
-Repair Cannon (R0)
-CitS (early BK)
-Take the fall into the water to survive if too low on hearts after CitS!
-Warp Kakariko
-Ending Blow from Graveyard Wolf

-Warp Mirror Chamber
-PoT
-Warp Lake Hylia
-Grab 20R from Fyer
-Pay Fyer and shoot up the Cannon
-Leave through the door and dash to Castle Town
-Squidna
-Hyrule Castle
-Ganondorf
-WHIRL REKKY!