Create a new version of paste:

# core HAL config file for simulation

#First load the Python user module named /user/bin/9axis_arduino with the name 'arduino'
loadusr -Wn arduino /usr/bin/9axis_arduino

# first load all the RT modules that will be needed
# kinematics
loadrt trivkins
# motion controller, get name and thread periods from ini file
loadrt [EMCMOT]EMCMOT base_period_nsec=[EMCMOT]BASE_PERIOD servo_period_nsec=[EMCMOT]SERVO_PERIOD num_joints=[TRAJ]AXES
# load 6 differentiators (for velocity and accel signals
loadrt ddt count=6
# load additional blocks
loadrt hypot count=2
loadrt comp count=3
loadrt or2 count=1

# add motion controller functions to servo thread
addf motion-command-handler servo-thread
addf motion-controller servo-thread
# link the differentiator functions into the code
addf ddt.0 servo-thread
addf ddt.1 servo-thread
addf ddt.2 servo-thread
addf ddt.3 servo-thread
addf ddt.4 servo-thread
addf ddt.5 servo-thread
addf hypot.0 servo-thread
addf hypot.1 servo-thread

# create HAL signals for position commands from motion module
# loop position commands back to motion module feedback
#net Xpos axis.0.motor-pos-cmd => axis.0.motor-pos-fb ddt.0.in
#net Ypos axis.1.motor-pos-cmd => axis.1.motor-pos-fb ddt.2.in
#net Zpos axis.2.motor-pos-cmd => axis.2.motor-pos-fb ddt.4.in

#net Xpos arduino.axis0-pos => axis.0.motor-pos-fb ddt.0.in
#net Ypos arduino.axis1-pos => axis.1.motor-pos-fb ddt.2.in
#net Zpos arduino.axis2-pos => axis.2.motor-pos-fb ddt.4.in


net Xpos axis.0.motor-pos-cmd => arduino.axis0-cmd
net Xpos-fb arduino.axis0-pos => axis.0.motor-pos-fb ddt.0.in
net Ypos axis.1.motor-pos-cmd => arduino.axis1-cmd
net Ypos-fb arduino.axis1-pos => axis.1.motor-pos-fb ddt.2.in
net Zpos axis.2.motor-pos-cmd => arduino.axis2-cmd
net Zpos-fb arduino.axis2-pos => axis.2.motor-pos-fb ddt.4.in


# send the position commands thru differentiators to
# generate velocity and accel signals
net Xvel ddt.0.out => ddt.1.in hypot.0.in0
net Xacc <= ddt.1.out 
net Yvel ddt.2.out => ddt.3.in hypot.0.in1
net Yacc <= ddt.3.out 
net Zvel ddt.4.out => ddt.5.in hypot.1.in0
net Zacc <= ddt.5.out 

# Cartesian 2- and 3-axis velocities
net XYvel hypot.0.out => hypot.1.in1
net XYZvel <= hypot.1.out

# estop loopback
net estop-loop iocontrol.0.user-enable-out iocontrol.0.emc-enable-in

# Control panel switches
	# E-Stop
#unlinkp iocontrol.0.user-enable-out
#unlinkp iocontrol.0.emc-enable-in
#net eStop iocontrol.0.user-enable-out => arduino.eStop
#net eStop iocontrol.0.emc-enable-in <= arduino.eStop

	# Power
#unlinkp halui.machine.is-on
#unlinkp halui.machine.on
#unlinkp halui.machine.off
#net machstate arduino.machine-state <= halui.machine.is-on
#net turnoff halui.machine.off <= arduino.switch-off
#net turnon halui.machine.on <= arduino.switch-on

	# Start/Run
#unlinkp halui.program.run
#net ProgramStart arduino.start => halui.program.run

	# Stop
#unlinkp halui.program.stop
#net ProgramStop arduino.stop => halui.program.stop

	# Pause
#unlinkp halui.program.pause
#net ProgramPause arduino.pause => halui.program.pause

	# Resume
#unlinkp halui.program.resume
#net ProgramResume arduino.resume => halui.program.resume

	# Program step
#unlinkp halui.program.step
#net ProgramStep arduino.step => halui.program.step

	# Touch probe
#unlinkp motion.probe-input
#net probe arduino.probe => motion.probe-input

	# Spindle power
#unlinkp motion.spindle-on
#net spindle-On arduino.spindleEnable <= motion.spindle-on

	# Spindle direction
#unlinkp motion.spindle-reverse
#net spindle-Dir arduino.spindleDirection <= motion.spindle-reverse

	# Spindle at speed
#unlinkp motion.spindle-at-speed
#net spindle-at-speed arduino.spindleAtSpeed => motion.spindle-at-speed

	# Coolant flood
#unlinkp iocontrol.0.coolant-flood
#net flood arduino.coolantFlood <= iocontrol.0.coolant-flood

	# Coolant mist
#unlinkp iocontrol.0.coolant-mist
#net mist arduino.coolantMist <= iocontrol.0.coolant-mist

# create signals for tool loading loopback
net tool-prep-loop iocontrol.0.tool-prepare iocontrol.0.tool-prepared
net tool-change-loop iocontrol.0.tool-change iocontrol.0.tool-changed


###############################################################################
##### Now on to the axies, if you don't have a given axis comment out the #####
##### related section entirely. If you don't, EMC will crash on load.     #####
#####  (But will give you useful debug info to guide you.)                #####
###############################################################################
##### If you just want the switches for an axis, comment out the lines    #####
##### containing the word 'motor' in them for the axies you DO have.      #####
###############################################################################

### X-axis (axis.0) ###
#unlinkp axis.0.home-sw-in
#net home-X arduino.xHome => axis.0.home-sw-in

#unlinkp axis.0.neg-lim-sw-in
net min-home-X arduino.xMinLmt => axis.0.neg-lim-sw-in axis.0.home-sw-in
#net min-X arduino.xMinLmt => axis.0.neg-lim-sw-in

#unlinkp axis.0.pos-lim-sw-in
net max-X arduino.xMaxLmt => axis.0.pos-lim-sw-in

#unlinkp axis.0.motor-pos-cmd
#net Xpos-cmd axis.0.motor-pos-cmd => arduino.axis0-cmd
#net Xpos => arduino.axis0-cmd


### Y-axis (axis.1) ###  
#unlinkp axis.1.home-sw-in
#net home-Y arduino.yHome => axis.1.home-sw-in

#unlinkp axis.1.neg-lim-sw-in
net min-home-Y arduino.yMinLmt => axis.1.neg-lim-sw-in axis.1.home-sw-in
#net min-Y arduino.yMinLmt => axis.1.neg-lim-sw-in

#unlinkp axis.1.pos-lim-sw-in
net max-Y arduino.yMaxLmt => axis.1.pos-lim-sw-in

#unlinkp axis.1.motor-pos-cmd
#net Ypos-cmd axis.1.motor-pos-cmd => arduino.axis1-cmd 
#net Ypos => arduino.axis1-cmd 


### Z-axis (axis.2) ###
#unlinkp axis.2.home-sw-in
#net home-Z arduino.zHome => xis.2.home-sw-in

#unlinkp axis.2.neg-lim-sw-in
net min-home-Z => arduino.zMinLmt => axis.2.neg-lim-sw-in axis.2.home-sw-in
#net min-Z => arduino.zMinLmt => axis.2.neg-lim-sw-in

#unlinkp axis.2.pos-lim-sw-in
net max-Z => arduino.zMaxLmt => axis.2.pos-lim-sw-in

#unlinkp axis.2.motor-pos-cmd
#net Zpos-cmd axis.2.motor-pos-cmd => arduino.axis2-cmd 
#net Zpos => arduino.axis2-cmd 


### A-axis (axis.3) ###
#unlinkp axis.3.home-sw-in
#net home-A arduino.aHome => axis.3.home-sw-in

#unlinkp axis.3.neg-lim-sw-in
#net min-A => arduino.aMinLmt => axis.3.neg-lim-sw-in

#unlinkp axis.3.pos-lim-sw-in
#net max-A => arduino.aMaxLmt => axis.3.pos-lim-sw-in

#unlinkp axis.3.motor-pos-cmd
#net apos-cmd axis.3.motor-pos-cmd => arduino.axis3-cmd


### B-axis (axis.4) ###
#unlinkp axis.4.home-sw-in
#net home-B arduino.bHome => axis.4.home-sw-in

#unlinkp axis.4.neg-lim-sw-in
#net min-B => arduino.bMinLmt => axis.4.neg-lim-sw-in

#unlinkp axis.4.pos-lim-sw-in
#net max-B => arduino.bMaxLmt => axis.4.pos-lim-sw-in

#unlinkp axis.4.motor-pos-cmd
#net bpos-cmd axis.4.motor-pos-cmd => arduino.axis4-cmd


### C-axis (axis.5) ###
#unlinkp axis.5.home-sw-in
#net home-C arduino.cHome => axis.5.home-sw-in

#unlinkp axis.5.neg-lim-sw-in
#net min-C => arduino.cMinLmt => axis.5.neg-lim-sw-in

#unlinkp axis.5.pos-lim-sw-in
#net max-C => arduino.cMaxLmt => axis.5.pos-lim-sw-in

#unlinkp axis.5.motor-pos-cmd
#net cpos-cmd axis.5.motor-pos-cmd => arduino.axis5-cmd


### U-axis (axis.6) ###
#unlinkp axis.6.home-sw-in
#net home-U arduino.uHome => axis.6.home-sw-in

#unlinkp axis.6.neg-lim-sw-in
#net min-U => arduino.uMinLmt => axis.6.neg-lim-sw-in

#unlinkp axis.6.pos-lim-sw-in
#net max-U => arduino.uMaxLmt => axis.6.pos-lim-sw-in

#unlinkp axis.6.motor-pos-cmd
#net upos-cmd axis.6.motor-pos-cmd => arduino.axis6-cmd


### V-axis (axis.7) ###
#unlinkp axis.7.home-sw-in
#net home-V arduino.vHome => axis.7.home-sw-in

#unlinkp axis.7.neg-lim-sw-in
#net min-V => arduino.vMinLmt => axis.7.neg-lim-sw-in

#unlinkp axis.7.pos-lim-sw-in
#net max-V => arduino.vMaxLmt => axis.7.pos-lim-sw-in

#unlinkp axis.7.motor-pos-cmd
#net vpos-cmd axis.7.motor-pos-cmd => arduino.axis7-cmd


### W-axis (axis.8) ###
#unlinkp axis.8.home-sw-in
#net home-W arduino.wHome => axis.8.home-sw-in

#unlinkp axis.8.neg-lim-sw-in
#net min-W => arduino.wMinLmt => axis.8.neg-lim-sw-in

#unlinkp axis.8.pos-lim-sw-in
#net max-W => arduino.wMaxLmt => axis.8.pos-lim-sw-in

#unlinkp axis.8.motor-pos-cmd
#net wpos-cmd axis.8.motor-pos-cmd => arduino.axis8-cmd