exonerate -q seq1.fasta -t seq2.fasta --showsugar --showciga

$ exonerate -q seq1.fasta -t seq2.fasta --showsugar --showcigar -n 1 -m affine:global --exhaustive
Command line: [exonerate -q seq1.fasta -t seq2.fasta --showsugar --showcigar -n 1 -m affine:global --exhaustive]
Hostname: [ooker-Aspire-4741]

** (process:7377): WARNING **: Warning zero length sequence [seq1\nACKKAKCAKCAIKCAKCKACNGHSCKAAEUIIDHTN]

** (process:7377): WARNING **: Warning zero length sequence [seq2\nACKKAKCAKCAIIKCAKCKACNGHSKAAEUIIDHTN]

** (process:7377): WARNING **: Exhaustively generating suboptimal alignments will be VERY SLOW

** (process:7377): WARNING **: Warning zero length sequence [seq1\nACKKAKCAKCAIKCAKCKACNGHSCKAAEUIIDHTN]

** (process:7377): WARNING **: Warning zero length sequence [seq2\nACKKAKCAKCAIIKCAKCKACNGHSKAAEUIIDHTN]

** (process:7377): WARNING **: Warning zero length sequence [seq2\nACKKAKCAKCAIIKCAKCKACNGHSKAAEUIIDHTN]
-- completed exonerate analysis