API tools faq
paste
misnomer001

arslantepe_lateC

misnomer001
Feb 18th, 2022
132
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 11.59 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: anatolia
  5. indivname: anatolia.ind
  6. snpname: anatolia.snp
  7. genotypename: anatolia.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1762051654
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.6930
  18.  
  19. left pops:
  20. Turkey_Arslantepe_LateC
  21. Turkey_TellKurdu_EC
  22. Armenia_EBA_KuraAraxes
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. EHG
  28. CHG
  29. England_Mesolithic
  30. Morocco_Iberomaurusian
  31. IVC
  32. WSHG
  33. Tarim_EMBA1
  34. Mongolia_North_N
  35. Turkey_Epipaleolithic
  36. Iran_GanjDareh_N
  37. PPN
  38. Russia_Steppe_Eneolithic
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 1 dof: 12 chisq: 20.510 tail: 0.0580390219 dofdiff: 14 chisqdiff: -20.510 taildiff: 1
  43. B:
  44. scale 1.000
  45. ONG.SG 0.149
  46. EHG 0.293
  47. CHG 1.092
  48. England_Mesolithic -0.537
  49. Morocco_Iberomaurusian -0.816
  50. IVC 0.660
  51. WSHG 0.782
  52. Tarim_EMBA1 1.113
  53. Mongolia_North_N 0.204
  54. Turkey_Epipaleolithic -1.683
  55. Iran_GanjDareh_N 0.762
  56. PPN -2.094
  57. Russia_Steppe_Eneolithic 0.788
  58. A:
  59. scale 217.965
  60. Turkey_TellKurdu_EC -1.009
  61. Armenia_EBA_KuraAraxes 0.991
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 20.510 taildiff: 0.0580390219
  67. B:
  68. scale 219.338 216.932
  69. ONG.SG -0.212 0.055
  70. EHG -0.411 0.190
  71. CHG -1.304 0.896
  72. England_Mesolithic 0.754 -0.199
  73. Morocco_Iberomaurusian 0.748 -0.878
  74. IVC -0.668 0.626
  75. WSHG -0.816 0.760
  76. Tarim_EMBA1 -1.089 1.105
  77. Mongolia_North_N -0.338 0.042
  78. Turkey_Epipaleolithic 1.284 -2.013
  79. Iran_GanjDareh_N -1.016 0.452
  80. PPN 2.102 -2.004
  81. Russia_Steppe_Eneolithic -0.668 0.939
  82. A:
  83. scale 1.414 1.414
  84. Turkey_TellKurdu_EC 1.414 0.000
  85. Armenia_EBA_KuraAraxes 0.000 1.414
  86.  
  87.  
  88. best coefficients: 0.496 0.504
  89. totmean: 0.496 0.504
  90. boot mean: 0.495 0.505
  91. std. errors: 0.023 0.023
  92.  
  93. error covariance (* 1,000,000)
  94. 508 -508
  95. -508 508
  96.  
  97.  
  98. summ: Turkey_Arslantepe_LateC 2 0.058039 0.495 0.505 508 -508 508
  99.  
  100. fixed pat wt dof chisq tail prob
  101. 00 0 12 20.510 0.058039 0.496 0.504
  102. 01 1 13 380.723 0 1.000 0.000
  103. 10 1 13 264.071 0 0.000 1.000
  104. best pat: 00 0.058039 - -
  105. best pat: 10 7.59526e-49 chi(nested): 243.562 p-value for nested model: 6.57821e-55
  106.  
  107. coeffs: 0.496 0.504
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: Turkey_TellKurdu_EC ONG.SG -0.000965 -1.082738
  113. details: Armenia_EBA_KuraAraxes ONG.SG 0.000253 0.257693
  114. dscore: ONG.SG f4: -0.000351 Z: -0.504011
  115.  
  116. details: Turkey_TellKurdu_EC EHG -0.001876 -1.773357
  117. details: Armenia_EBA_KuraAraxes EHG 0.000877 0.776855
  118. dscore: EHG f4: -0.000487 Z: -0.586612
  119.  
  120. details: Turkey_TellKurdu_EC CHG -0.005944 -5.814580
  121. details: Armenia_EBA_KuraAraxes CHG 0.004132 3.669328
  122. dscore: CHG f4: -0.000861 Z: -1.049498
  123.  
  124. details: Turkey_TellKurdu_EC England_Mesolithic 0.003439 2.887013
  125. details: Armenia_EBA_KuraAraxes England_Mesolithic -0.000917 -0.731883
  126. dscore: England_Mesolithic f4: 0.001242 Z: 1.359969
  127.  
  128. details: Turkey_TellKurdu_EC Morocco_Iberomaurusian 0.003409 4.135777
  129. details: Armenia_EBA_KuraAraxes Morocco_Iberomaurusian -0.004048 -4.738458
  130. dscore: Morocco_Iberomaurusian f4: -0.000353 Z: -0.566979
  131.  
  132. details: Turkey_TellKurdu_EC IVC -0.003044 -3.611793
  133. details: Armenia_EBA_KuraAraxes IVC 0.002887 3.243218
  134. dscore: IVC f4: -0.000052 Z: -0.078468
  135.  
  136. details: Turkey_TellKurdu_EC WSHG -0.003721 -3.559615
  137. details: Armenia_EBA_KuraAraxes WSHG 0.003503 3.126204
  138. dscore: WSHG f4: -0.000077 Z: -0.093728
  139.  
  140. details: Turkey_TellKurdu_EC Tarim_EMBA1 -0.004963 -5.079489
  141. details: Armenia_EBA_KuraAraxes Tarim_EMBA1 0.005092 4.627825
  142. dscore: Tarim_EMBA1 f4: 0.000109 Z: 0.140122
  143.  
  144. details: Turkey_TellKurdu_EC Mongolia_North_N -0.001543 -1.705007
  145. details: Armenia_EBA_KuraAraxes Mongolia_North_N 0.000196 0.204023
  146. dscore: Mongolia_North_N f4: -0.000666 Z: -0.942672
  147.  
  148. details: Turkey_TellKurdu_EC Turkey_Epipaleolithic 0.005856 4.581829
  149. details: Armenia_EBA_KuraAraxes Turkey_Epipaleolithic -0.009278 -7.097953
  150. dscore: Turkey_Epipaleolithic f4: -0.001778 Z: -1.775072
  151.  
  152. details: Turkey_TellKurdu_EC Iran_GanjDareh_N -0.004633 -5.292156
  153. details: Armenia_EBA_KuraAraxes Iran_GanjDareh_N 0.002083 2.275978
  154. dscore: Iran_GanjDareh_N f4: -0.001245 Z: -1.869332
  155.  
  156. details: Turkey_TellKurdu_EC PPN 0.009583 10.339049
  157. details: Armenia_EBA_KuraAraxes PPN -0.009239 -9.201013
  158. dscore: PPN f4: 0.000088 Z: 0.124577
  159.  
  160. details: Turkey_TellKurdu_EC Russia_Steppe_Eneolithic -0.003046 -3.390932
  161. details: Armenia_EBA_KuraAraxes Russia_Steppe_Eneolithic 0.004330 4.465186
  162. dscore: Russia_Steppe_Eneolithic f4: 0.000675 Z: 0.966177
  163.  
  164. gendstat: Mbuti.DG ONG.SG -0.504
  165. gendstat: Mbuti.DG EHG -0.587
  166. gendstat: Mbuti.DG CHG -1.049
  167. gendstat: Mbuti.DG England_Mesolithic 1.360
  168. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.567
  169. gendstat: Mbuti.DG IVC -0.078
  170. gendstat: Mbuti.DG WSHG -0.094
  171. gendstat: Mbuti.DG Tarim_EMBA1 0.140
  172. gendstat: Mbuti.DG Mongolia_North_N -0.943
  173. gendstat: Mbuti.DG Turkey_Epipaleolithic -1.775
  174. gendstat: Mbuti.DG Iran_GanjDareh_N -1.869
  175. gendstat: Mbuti.DG PPN 0.125
  176. gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.966
  177. gendstat: ONG.SG EHG -0.167
  178. gendstat: ONG.SG CHG -0.606
  179. gendstat: ONG.SG England_Mesolithic 1.743
  180. gendstat: ONG.SG Morocco_Iberomaurusian -0.003
  181. gendstat: ONG.SG IVC 0.445
  182. gendstat: ONG.SG WSHG 0.348
  183. gendstat: ONG.SG Tarim_EMBA1 0.646
  184. gendstat: ONG.SG Mongolia_North_N -0.495
  185. gendstat: ONG.SG Turkey_Epipaleolithic -1.404
  186. gendstat: ONG.SG Iran_GanjDareh_N -1.238
  187. gendstat: ONG.SG PPN 0.585
  188. gendstat: ONG.SG Russia_Steppe_Eneolithic 1.366
  189. gendstat: EHG CHG -0.416
  190. gendstat: EHG England_Mesolithic 1.902
  191. gendstat: EHG Morocco_Iberomaurusian 0.159
  192. gendstat: EHG IVC 0.548
  193. gendstat: EHG WSHG 0.564
  194. gendstat: EHG Tarim_EMBA1 0.884
  195. gendstat: EHG Mongolia_North_N -0.233
  196. gendstat: EHG Turkey_Epipaleolithic -1.228
  197. gendstat: EHG Iran_GanjDareh_N -0.931
  198. gendstat: EHG PPN 0.672
  199. gendstat: EHG Russia_Steppe_Eneolithic 1.548
  200. gendstat: CHG England_Mesolithic 2.107
  201. gendstat: CHG Morocco_Iberomaurusian 0.595
  202. gendstat: CHG IVC 1.039
  203. gendstat: CHG WSHG 0.887
  204. gendstat: CHG Tarim_EMBA1 1.110
  205. gendstat: CHG Mongolia_North_N 0.236
  206. gendstat: CHG Turkey_Epipaleolithic -0.835
  207. gendstat: CHG Iran_GanjDareh_N -0.509
  208. gendstat: CHG PPN 1.105
  209. gendstat: CHG Russia_Steppe_Eneolithic 2.095
  210. gendstat: England_Mesolithic Morocco_Iberomaurusian -1.774
  211. gendstat: England_Mesolithic IVC -1.389
  212. gendstat: England_Mesolithic WSHG -1.424
  213. gendstat: England_Mesolithic Tarim_EMBA1 -1.233
  214. gendstat: England_Mesolithic Mongolia_North_N -2.238
  215. gendstat: England_Mesolithic Turkey_Epipaleolithic -2.781
  216. gendstat: England_Mesolithic Iran_GanjDareh_N -2.775
  217. gendstat: England_Mesolithic PPN -1.279
  218. gendstat: England_Mesolithic Russia_Steppe_Eneolithic -0.644
  219. gendstat: Morocco_Iberomaurusian IVC 0.425
  220. gendstat: Morocco_Iberomaurusian WSHG 0.333
  221. gendstat: Morocco_Iberomaurusian Tarim_EMBA1 0.575
  222. gendstat: Morocco_Iberomaurusian Mongolia_North_N -0.432
  223. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -1.440
  224. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -1.202
  225. gendstat: Morocco_Iberomaurusian PPN 0.638
  226. gendstat: Morocco_Iberomaurusian Russia_Steppe_Eneolithic 1.444
  227. gendstat: IVC WSHG -0.033
  228. gendstat: IVC Tarim_EMBA1 0.229
  229. gendstat: IVC Mongolia_North_N -0.942
  230. gendstat: IVC Turkey_Epipaleolithic -1.691
  231. gendstat: IVC Iran_GanjDareh_N -1.943
  232. gendstat: IVC PPN 0.191
  233. gendstat: IVC Russia_Steppe_Eneolithic 1.112
  234. gendstat: WSHG Tarim_EMBA1 0.300
  235. gendstat: WSHG Mongolia_North_N -0.785
  236. gendstat: WSHG Turkey_Epipaleolithic -1.620
  237. gendstat: WSHG Iran_GanjDareh_N -1.503
  238. gendstat: WSHG PPN 0.199
  239. gendstat: WSHG Russia_Steppe_Eneolithic 0.992
  240. gendstat: Tarim_EMBA1 Mongolia_North_N -1.187
  241. gendstat: Tarim_EMBA1 Turkey_Epipaleolithic -1.807
  242. gendstat: Tarim_EMBA1 Iran_GanjDareh_N -1.856
  243. gendstat: Tarim_EMBA1 PPN -0.026
  244. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic 0.813
  245. gendstat: Mongolia_North_N Turkey_Epipaleolithic -1.179
  246. gendstat: Mongolia_North_N Iran_GanjDareh_N -0.846
  247. gendstat: Mongolia_North_N PPN 1.047
  248. gendstat: Mongolia_North_N Russia_Steppe_Eneolithic 1.911
  249. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N 0.535
  250. gendstat: Turkey_Epipaleolithic PPN 1.976
  251. gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 2.435
  252. gendstat: Iran_GanjDareh_N PPN 1.788
  253. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic 2.814
  254. gendstat: PPN Russia_Steppe_Eneolithic 0.817
  255.  
  256. removing /tmp/fsx.6930
  257. ##end of qpAdm: 1.771 seconds cpu 0.778 Mbytes in use
  258.  
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!