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  1. Last login: Fri Mar  1 05:10:05 on console
  2. (base) Alis-iMac:~ [user]$ conda update --all
  3. Collecting package metadata: done
  4. Solving environment: \
  5. Warning: 2 possible package resolutions (only showing differing packages):
  6.   - defaults::nbconvert-5.3.1-py37_0, defaults::pandoc-2.2.3.2-0
  7.   - defaults::nbconvert-5.4.1-py37_0, defaults::pandoc-1.19.2.1-ha5e8f32done
  8.  
  9. ## Package Plan ##
  10.  
  11.   environment location: /Users/[user]/anaconda3
  12.  
  13.  
  14. The following packages will be UPDATED:
  15.  
  16.   appscript                            1.0.1-py37h1de35cc_1 --> 1.1.0-py37h1de35cc_0
  17.   astropy                                3.1-py37h1de35cc_0 --> 3.1.2-py37h1de35cc_0
  18.   atomicwrites       pkgs/main/osx-64::atomicwrites-1.2.1-~ --> pkgs/main/noarch::atomicwrites-1.3.0-py_0
  19.   beautifulsoup4                               4.6.3-py37_0 --> 4.7.1-py37_1
  20.   bleach                                       3.0.2-py37_0 --> 3.1.0-py37_0
  21.   blosc                                   1.14.4-hd9629dc_0 --> 1.15.0-hd9629dc_0
  22.   bokeh                                        1.0.2-py37_0 --> 1.0.4-py37_0
  23.   cffi                                1.11.5-py37h6174b99_1 --> 1.12.1-py37hb5b8e2f_0
  24.   cloudpickle                                  0.6.1-py37_0 --> 0.8.0-py37_0
  25.   cryptography                         2.4.2-py37ha12b0ac_0 --> 2.5-py37ha12b0ac_0
  26.   cython                              0.29.2-py37h0a44026_0 --> 0.29.5-py37h0a44026_0
  27.   dask                                         1.0.0-py37_0 --> 1.1.2-py37_0
  28.   dask-core          pkgs/main/osx-64::dask-core-1.0.0-py3~ --> pkgs/main/noarch::dask-core-1.1.2-py_0
  29.   dbus                                    1.13.2-h760590f_1 --> 1.13.6-h90a0687_0
  30.   decorator                                    4.3.0-py37_0 --> 4.3.2-py37_0
  31.   distributed                                 1.25.1-py37_0 --> 1.26.0-py37_0
  32.   entrypoints                                  0.2.3-py37_2 --> 0.3-py37_0
  33.   gevent                               1.3.7-py37h1de35cc_1 --> 1.4.0-py37h1de35cc_0
  34.   h5py                                 2.8.0-py37h878fce3_3 --> 2.9.0-py37h3134771_0
  35.   hdf5                                    1.10.2-hfa1e0ec_1 --> 1.10.4-hfa1e0ec_0
  36.   imageio                                      2.4.1-py37_0 --> 2.5.0-py37_0
  37.   importlib_metadata                             0.6-py37_0 --> 0.7-py37_0
  38.   ipython                              7.2.0-py37h39e3cac_0 --> 7.3.0-py37h39e3cac_0
  39.   isort                                        4.3.4-py37_0 --> 4.3.8-py37_0
  40.   jedi                                        0.13.2-py37_0 --> 0.13.3-py37_0
  41.   keyring                                     17.0.0-py37_0 --> 18.0.0-py37_0
  42.   libedit                           3.1.20170329-hb402a30_2 --> 3.1.20181209-hb402a30_0
  43.   liblief                                  0.9.0-h2a1bed3_0 --> 0.9.0-h2a1bed3_2
  44.   libpng                                  1.6.35-ha441bb4_0 --> 1.6.36-ha441bb4_0
  45.   libtiff                                  4.0.9-hcb84e12_2 --> 4.0.10-hcb84e12_2
  46.   libxml2                                  2.9.8-hab757c2_1 --> 2.9.9-hab757c2_0
  47.   libxslt                                 1.1.32-hb819dd2_0 --> 1.1.33-h33a18ac_0
  48.   llvmlite                            0.26.0-py37h8c7ce04_0 --> 0.27.0-py37h8c7ce04_0
  49.   lxml                                 4.2.5-py37hef8c89e_0 --> 4.3.1-py37hef8c89e_0
  50.   markupsafe                           1.1.0-py37h1de35cc_0 --> 1.1.1-py37h1de35cc_0
  51.   mkl_fft                              1.0.6-py37h27c97d8_0 --> 1.0.10-py37h5e564d8_0
  52.   more-itertools                               4.3.0-py37_0 --> 5.0.0-py37_0
  53.   msgpack-python                       0.5.6-py37h04f5b5a_1 --> 0.6.1-py37h04f5b5a_1
  54.   numba                               0.41.0-py37h6440ff4_0 --> 0.42.0-py37h6440ff4_0
  55.   numexpr                              2.6.8-py37h7413580_0 --> 2.6.9-py37h7413580_0
  56.   openpyxl                                    2.5.12-py37_0 --> 2.6.0-py37_0
  57.   packaging                                     18.0-py37_0 --> 19.0-py37_0
  58.   pandas                              0.23.4-py37h6440ff4_0 --> 0.24.1-py37h0a44026_0
  59.   pandoc                                1.19.2.1-ha5e8f32_1 --> 2.2.3.2-0
  60.   parso                                        0.3.1-py37_0 --> 0.3.4-py37_0
  61.   pillow                               5.3.0-py37hb68e598_0 --> 5.4.1-py37hb68e598_0
  62.   pip                                           18.1-py37_0 --> 19.0.3-py37_0
  63.   pkginfo                                      1.4.2-py37_1 --> 1.5.0.1-py37_0
  64.   pluggy                                       0.8.0-py37_0 --> 0.9.0-py37_0
  65.   prometheus_client                            0.5.0-py37_0 --> 0.6.0-py37_0
  66.   prompt_toolkit                               2.0.7-py37_0 --> 2.0.9-py37_0
  67.   psutil                               5.4.8-py37h1de35cc_0 --> 5.5.0-py37h1de35cc_0
  68.   py                                           1.7.0-py37_0 --> 1.8.0-py37_0
  69.   py-lief                              0.9.0-py37hd4eaf27_0 --> 0.9.0-py37h1413db1_2
  70.   pycodestyle                                  2.4.0-py37_0 --> 2.5.0-py37_0
  71.   pyflakes                                     2.0.0-py37_0 --> 2.1.0-py37_0
  72.   pyodbc                              4.0.25-py37h0a44026_0 --> 4.0.26-py37h0a44026_0
  73.   pyopenssl                                   18.0.0-py37_0 --> 19.0.0-py37_0
  74.   pyparsing                                    2.3.0-py37_0 --> 2.3.1-py37_0
  75.   pytest                                       4.0.2-py37_0 --> 4.3.0-py37_0
  76.   pytest-openfiles                             0.3.1-py37_0 --> 0.3.2-py37_0
  77.   python                                   3.7.1-haf84260_7 --> 3.7.2-haf84260_0
  78.   python-dateutil                              2.7.5-py37_0 --> 2.8.0-py37_0
  79.   pytz                                        2018.7-py37_0 --> 2018.9-py37_0
  80.   pyzmq                               17.1.2-py37h1de35cc_0 --> 18.0.0-py37h0a44026_0
  81.   qtawesome          pkgs/main/osx-64::qtawesome-0.5.3-py3~ --> pkgs/main/noarch::qtawesome-0.5.6-py_0
  82.   qtpy                  pkgs/main/osx-64::qtpy-1.5.2-py37_0 --> pkgs/main/noarch::qtpy-1.6.0-py_0
  83.   rope                                        0.11.0-py37_0 --> 0.12.0-py37_0
  84.   scikit-learn                        0.20.1-py37h27c97d8_0 --> 0.20.2-py37h27c97d8_0
  85.   scipy                                1.1.0-py37h1410ff5_2 --> 1.2.1-py37h1410ff5_0
  86.   setuptools                                  40.6.3-py37_0 --> 40.8.0-py37_0
  87.   sortedcollections                            1.0.1-py37_0 --> 1.1.2-py37_0
  88.   sphinx                                       1.8.2-py37_0 --> 1.8.4-py37_0
  89.   spyder                                       3.3.2-py37_0 --> 3.3.3-py37_0
  90.   spyder-kernels                               0.3.0-py37_0 --> 0.4.2-py37_0
  91.   sqlalchemy                          1.2.15-py37h1de35cc_0 --> 1.2.18-py37h1de35cc_0
  92.   tqdm               pkgs/main/osx-64::tqdm-4.28.1-py37h28~ --> pkgs/main/noarch::tqdm-4.31.1-py_0
  93.   wheel                                       0.32.3-py37_0 --> 0.33.1-py37_0
  94.   wrapt                              1.10.11-py37h1de35cc_2 --> 1.11.1-py37h1de35cc_0
  95.   xlsxwriter                                   1.1.2-py37_0 --> 1.1.5-py37_0
  96.   xlwings                                     0.15.1-py37_0 --> 0.15.3-py37_0
  97.   zeromq                                   4.2.5-h0a44026_1 --> 4.3.1-h0a44026_3
  98.  
  99. The following packages will be DOWNGRADED:
  100.  
  101.   nbconvert                                    5.4.0-py37_1 --> 5.3.1-py37_0
  102.   pytables                             3.4.4-py37h13cba08_0 --> 3.4.4-py37h5bccee9_0
  103.  
  104.  
  105. Proceed ([y]/n)? y
  106.  
  107. Preparing transaction: done
  108. Verifying transaction: done
  109. Executing transaction: done
  110. (base) Alis-iMac:~ [user]$ R
  111.  
  112. R version 3.5.1 (2018-07-02) -- "Feather Spray"
  113. Copyright (C) 2018 The R Foundation for Statistical Computing
  114. Platform: x86_64-apple-darwin13.4.0 (64-bit)
  115.  
  116. R is free software and comes with ABSOLUTELY NO WARRANTY.
  117. You are welcome to redistribute it under certain conditions.
  118. Type 'license()' or 'licence()' for distribution details.
  119.  
  120.   Natural language support but running in an English locale
  121.  
  122. R is a collaborative project with many contributors.
  123. Type 'contributors()' for more information and
  124. 'citation()' on how to cite R or R packages in publications.
  125.  
  126. Type 'demo()' for some demos, 'help()' for on-line help, or
  127. 'help.start()' for an HTML browser interface to help.
  128. Type 'q()' to quit R.
  129.  
  130. > install.packages("ps")
  131. --- Please select a CRAN mirror for use in this session ---
  132. Secure CRAN mirrors
  133.  
  134.  1: 0-Cloud [https]                   2: Algeria [https]
  135.  3: Australia (Canberra) [https]      4: Australia (Melbourne 1) [https]
  136.  5: Australia (Melbourne 2) [https]   6: Australia (Perth) [https]
  137.  7: Austria [https]                   8: Belgium (Ghent) [https]
  138.  9: Brazil (PR) [https]              10: Brazil (RJ) [https]
  139. 11: Brazil (SP 1) [https]            12: Brazil (SP 2) [https]
  140. 13: Bulgaria [https]                 14: Chile 1 [https]
  141. 15: Chile 2 [https]                  16: China (Hong Kong) [https]
  142. 17: China (Guangzhou) [https]        18: China (Lanzhou) [https]
  143. 19: China (Shanghai 1) [https]       20: China (Shanghai 2) [https]
  144. 21: Colombia (Cali) [https]          22: Czech Republic [https]
  145. 23: Denmark [https]                  24: East Asia [https]
  146. 25: Ecuador (Cuenca) [https]         26: Ecuador (Quito) [https]
  147. 27: Estonia [https]                  28: France (Lyon 1) [https]
  148. 29: France (Lyon 2) [https]          30: France (Marseille) [https]
  149. 31: France (Montpellier) [https]     32: France (Paris 2) [https]
  150. 33: Germany (Erlangen) [https]       34: Germany (Göttingen) [https]
  151. 35: Germany (Münster) [https]        36: Greece [https]
  152. 37: Iceland [https]                  38: Indonesia (Jakarta) [https]
  153. 39: Ireland [https]                  40: Italy (Padua) [https]
  154. 41: Japan (Tokyo) [https]            42: Japan (Yonezawa) [https]
  155. 43: Korea (Busan) [https]            44: Korea (Gyeongsan-si) [https]
  156. 45: Korea (Seoul 1) [https]          46: Korea (Ulsan) [https]
  157. 47: Malaysia [https]                 48: Mexico (Mexico City) [https]
  158. 49: Norway [https]                   50: Philippines [https]
  159. 51: Serbia [https]                   52: Spain (A Coruña) [https]
  160. 53: Spain (Madrid) [https]           54: Sweden [https]
  161. 55: Switzerland [https]              56: Turkey (Denizli) [https]
  162. 57: Turkey (Mersin) [https]          58: UK (Bristol) [https]
  163. 59: UK (London 1) [https]            60: USA (CA 1) [https]
  164. 61: USA (IA) [https]                 62: USA (KS) [https]
  165. 63: USA (MI 1) [https]               64: USA (OR) [https]
  166. 65: USA (TN) [https]                 66: USA (TX 1) [https]
  167. 67: Uruguay [https]                  68: (other mirrors)
  168.  
  169.  
  170. Selection: 60
  171. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/ps_1.3.0.tar.gz'
  172. Content type 'application/x-gzip' length 261887 bytes (255 KB)
  173. ==================================================
  174. downloaded 255 KB
  175.  
  176. * installing *source* package ‘ps’ ...
  177. ** package ‘ps’ successfully unpacked and MD5 sums checked
  178. ** libs
  179. x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -Wall px.c -o px
  180. ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
  181. Undefined symbols for architecture x86_64:
  182.   "___error", referenced from:
  183.       _echo_from_fd in px-24adb6.o
  184.   "___stack_chk_fail", referenced from:
  185.       _cat2 in px-24adb6.o
  186.       _cat in px-24adb6.o
  187.       _echo_from_fd in px-24adb6.o
  188.       _main in px-24adb6.o
  189.   "___stack_chk_guard", referenced from:
  190.       _cat2 in px-24adb6.o
  191.       _cat in px-24adb6.o
  192.       _echo_from_fd in px-24adb6.o
  193.       _main in px-24adb6.o
  194.   "___stderrp", referenced from:
  195.       _usage in px-24adb6.o
  196.       _cat2 in px-24adb6.o
  197.       _cat in px-24adb6.o
  198.       _write_to_fd in px-24adb6.o
  199.       _echo_from_fd in px-24adb6.o
  200.       _main in px-24adb6.o
  201.   "___stdoutp", referenced from:
  202.       _echo_from_fd in px-24adb6.o
  203.       _main in px-24adb6.o
  204.   "_close", referenced from:
  205.       _cat in px-24adb6.o
  206.   "_exit", referenced from:
  207.       _cat2 in px-24adb6.o
  208.       _cat in px-24adb6.o
  209.   "_fflush", referenced from:
  210.       _echo_from_fd in px-24adb6.o
  211.       _main in px-24adb6.o
  212.   "_fprintf", referenced from:
  213.       _cat2 in px-24adb6.o
  214.       _cat in px-24adb6.o
  215.       _write_to_fd in px-24adb6.o
  216.       _echo_from_fd in px-24adb6.o
  217.       _main in px-24adb6.o
  218.   "_fputs", referenced from:
  219.       _main in px-24adb6.o
  220.   "_fwrite", referenced from:
  221.       _usage in px-24adb6.o
  222.       _main in px-24adb6.o
  223.   "_getenv", referenced from:
  224.       _main in px-24adb6.o
  225.   "_open", referenced from:
  226.       _cat in px-24adb6.o
  227.   "_printf", referenced from:
  228.       _main in px-24adb6.o
  229.   "_puts", referenced from:
  230.       _main in px-24adb6.o
  231.   "_read", referenced from:
  232.       _cat2 in px-24adb6.o
  233.       _cat in px-24adb6.o
  234.       _echo_from_fd in px-24adb6.o
  235.   "_sleep", referenced from:
  236.       _main in px-24adb6.o
  237.   "_sscanf", referenced from:
  238.       _main in px-24adb6.o
  239.   "_strcmp", referenced from:
  240.       _main in px-24adb6.o
  241.   "_strerror", referenced from:
  242.       _echo_from_fd in px-24adb6.o
  243.   "_strlen", referenced from:
  244.       _write_to_fd in px-24adb6.o
  245.       _echo_from_fd in px-24adb6.o
  246.       _main in px-24adb6.o
  247.   "_usleep", referenced from:
  248.       _main in px-24adb6.o
  249.   "_write", referenced from:
  250.       _cat2 in px-24adb6.o
  251.       _cat in px-24adb6.o
  252.       _write_to_fd in px-24adb6.o
  253.       _echo_from_fd in px-24adb6.o
  254.       _main in px-24adb6.o
  255.      (maybe you meant: _write_to_fd)
  256. ld: symbol(s) not found for architecture x86_64
  257. clang-4.0: error: linker command failed with exit code 1 (use -v to see invocation)
  258. make: *** [Makevars:11: px] Error 1
  259. ERROR: compilation failed for package ‘ps’
  260. * removing ‘/Users/[user]/anaconda3/lib/R/library/ps’
  261.  
  262. The downloaded source packages are in
  263.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpkN4iJB/downloaded_packages’
  264. Updating HTML index of packages in '.Library'
  265. Making 'packages.html' ... done
  266. Warning message:
  267. In install.packages("ps") :
  268.   installation of package ‘ps’ had non-zero exit status
  269. > install.packages("devtools")
  270. also installing the dependencies ‘ps’, ‘ini’, ‘processx’, ‘desc’, ‘xopen’, ‘clipr’, ‘clisymbols’, ‘fs’, ‘gh’, ‘whisker’, ‘callr’, ‘git2r’, ‘memoise’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘remotes’, ‘sessioninfo’, ‘usethis’
  271.  
  272. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/ps_1.3.0.tar.gz'
  273. Content type 'application/x-gzip' length 261887 bytes (255 KB)
  274. ==================================================
  275. downloaded 255 KB
  276.  
  277. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/ini_0.3.1.tar.gz'
  278. Content type 'application/x-gzip' length 3488 bytes
  279. ==================================================
  280. downloaded 3488 bytes
  281.  
  282. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/processx_3.2.1.tar.gz'
  283. Content type 'application/x-gzip' length 101057 bytes (98 KB)
  284. ==================================================
  285. downloaded 98 KB
  286.  
  287. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/desc_1.2.0.tar.gz'
  288. Content type 'application/x-gzip' length 65612 bytes (64 KB)
  289. ==================================================
  290. downloaded 64 KB
  291.  
  292. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/xopen_1.0.0.tar.gz'
  293. Content type 'application/x-gzip' length 11221 bytes (10 KB)
  294. ==================================================
  295. downloaded 10 KB
  296.  
  297. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/clipr_0.5.0.tar.gz'
  298. Content type 'application/x-gzip' length 13731 bytes (13 KB)
  299. ==================================================
  300. downloaded 13 KB
  301.  
  302. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/clisymbols_1.2.0.tar.gz'
  303. Content type 'application/x-gzip' length 9666 bytes
  304. ==================================================
  305. downloaded 9666 bytes
  306.  
  307. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/fs_1.2.6.tar.gz'
  308. Content type 'application/x-gzip' length 799325 bytes (780 KB)
  309. ==================================================
  310. downloaded 780 KB
  311.  
  312. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/gh_1.0.1.tar.gz'
  313. Content type 'application/x-gzip' length 15513 bytes (15 KB)
  314. ==================================================
  315. downloaded 15 KB
  316.  
  317. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/whisker_0.3-2.tar.gz'
  318. Content type 'application/x-gzip' length 27707 bytes (27 KB)
  319. ==================================================
  320. downloaded 27 KB
  321.  
  322. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/callr_3.1.1.tar.gz'
  323. Content type 'application/x-gzip' length 41273 bytes (40 KB)
  324. ==================================================
  325. downloaded 40 KB
  326.  
  327. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/git2r_0.24.0.tar.gz'
  328. Content type 'application/x-gzip' length 1151420 bytes (1.1 MB)
  329. ==================================================
  330. downloaded 1.1 MB
  331.  
  332. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/memoise_1.1.0.tar.gz'
  333. Content type 'application/x-gzip' length 11025 bytes (10 KB)
  334. ==================================================
  335. downloaded 10 KB
  336.  
  337. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/pkgbuild_1.0.2.tar.gz'
  338. Content type 'application/x-gzip' length 25264 bytes (24 KB)
  339. ==================================================
  340. downloaded 24 KB
  341.  
  342. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/pkgload_1.0.2.tar.gz'
  343. Content type 'application/x-gzip' length 55605 bytes (54 KB)
  344. ==================================================
  345. downloaded 54 KB
  346.  
  347. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/rcmdcheck_1.3.2.tar.gz'
  348. Content type 'application/x-gzip' length 1408582 bytes (1.3 MB)
  349. ==================================================
  350. downloaded 1.3 MB
  351.  
  352. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/remotes_2.0.2.tar.gz'
  353. Content type 'application/x-gzip' length 79682 bytes (77 KB)
  354. ==================================================
  355. downloaded 77 KB
  356.  
  357. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/sessioninfo_1.1.1.tar.gz'
  358. Content type 'application/x-gzip' length 46027 bytes (44 KB)
  359. ==================================================
  360. downloaded 44 KB
  361.  
  362. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/usethis_1.4.0.tar.gz'
  363. Content type 'application/x-gzip' length 325703 bytes (318 KB)
  364. ==================================================
  365. downloaded 318 KB
  366.  
  367. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/devtools_2.0.1.tar.gz'
  368. Content type 'application/x-gzip' length 388953 bytes (379 KB)
  369. ==================================================
  370. downloaded 379 KB
  371.  
  372. * installing *source* package ‘ps’ ...
  373. ** package ‘ps’ successfully unpacked and MD5 sums checked
  374. ** libs
  375. x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -Wall px.c -o px
  376. ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
  377. Undefined symbols for architecture x86_64:
  378.   "___error", referenced from:
  379.       _echo_from_fd in px-7d1ac9.o
  380.   "___stack_chk_fail", referenced from:
  381.       _cat2 in px-7d1ac9.o
  382.       _cat in px-7d1ac9.o
  383.       _echo_from_fd in px-7d1ac9.o
  384.       _main in px-7d1ac9.o
  385.   "___stack_chk_guard", referenced from:
  386.       _cat2 in px-7d1ac9.o
  387.       _cat in px-7d1ac9.o
  388.       _echo_from_fd in px-7d1ac9.o
  389.       _main in px-7d1ac9.o
  390.   "___stderrp", referenced from:
  391.       _usage in px-7d1ac9.o
  392.       _cat2 in px-7d1ac9.o
  393.       _cat in px-7d1ac9.o
  394.       _write_to_fd in px-7d1ac9.o
  395.       _echo_from_fd in px-7d1ac9.o
  396.       _main in px-7d1ac9.o
  397.   "___stdoutp", referenced from:
  398.       _echo_from_fd in px-7d1ac9.o
  399.       _main in px-7d1ac9.o
  400.   "_close", referenced from:
  401.       _cat in px-7d1ac9.o
  402.   "_exit", referenced from:
  403.       _cat2 in px-7d1ac9.o
  404.       _cat in px-7d1ac9.o
  405.   "_fflush", referenced from:
  406.       _echo_from_fd in px-7d1ac9.o
  407.       _main in px-7d1ac9.o
  408.   "_fprintf", referenced from:
  409.       _cat2 in px-7d1ac9.o
  410.       _cat in px-7d1ac9.o
  411.       _write_to_fd in px-7d1ac9.o
  412.       _echo_from_fd in px-7d1ac9.o
  413.       _main in px-7d1ac9.o
  414.   "_fputs", referenced from:
  415.       _main in px-7d1ac9.o
  416.   "_fwrite", referenced from:
  417.       _usage in px-7d1ac9.o
  418.       _main in px-7d1ac9.o
  419.   "_getenv", referenced from:
  420.       _main in px-7d1ac9.o
  421.   "_open", referenced from:
  422.       _cat in px-7d1ac9.o
  423.   "_printf", referenced from:
  424.       _main in px-7d1ac9.o
  425.   "_puts", referenced from:
  426.       _main in px-7d1ac9.o
  427.   "_read", referenced from:
  428.       _cat2 in px-7d1ac9.o
  429.       _cat in px-7d1ac9.o
  430.       _echo_from_fd in px-7d1ac9.o
  431.   "_sleep", referenced from:
  432.       _main in px-7d1ac9.o
  433.   "_sscanf", referenced from:
  434.       _main in px-7d1ac9.o
  435.   "_strcmp", referenced from:
  436.       _main in px-7d1ac9.o
  437.   "_strerror", referenced from:
  438.       _echo_from_fd in px-7d1ac9.o
  439.   "_strlen", referenced from:
  440.       _write_to_fd in px-7d1ac9.o
  441.       _echo_from_fd in px-7d1ac9.o
  442.       _main in px-7d1ac9.o
  443.   "_usleep", referenced from:
  444.       _main in px-7d1ac9.o
  445.   "_write", referenced from:
  446.       _cat2 in px-7d1ac9.o
  447.       _cat in px-7d1ac9.o
  448.       _write_to_fd in px-7d1ac9.o
  449.       _echo_from_fd in px-7d1ac9.o
  450.       _main in px-7d1ac9.o
  451.      (maybe you meant: _write_to_fd)
  452. ld: symbol(s) not found for architecture x86_64
  453. clang-4.0: error: linker command failed with exit code 1 (use -v to see invocation)
  454. make: *** [Makevars:11: px] Error 1
  455. ERROR: compilation failed for package ‘ps’
  456. * removing ‘/Users/[user]/anaconda3/lib/R/library/ps’
  457. * installing *source* package ‘ini’ ...
  458. ** package ‘ini’ successfully unpacked and MD5 sums checked
  459. ** R
  460. ** byte-compile and prepare package for lazy loading
  461. ** help
  462. *** installing help indices
  463. ** building package indices
  464. ** testing if installed package can be loaded
  465. * DONE (ini)
  466. * installing *source* package ‘desc’ ...
  467. ** package ‘desc’ successfully unpacked and MD5 sums checked
  468. ** R
  469. ** inst
  470. ** byte-compile and prepare package for lazy loading
  471. ** help
  472. *** installing help indices
  473. ** building package indices
  474. ** testing if installed package can be loaded
  475. * DONE (desc)
  476. * installing *source* package ‘clipr’ ...
  477. ** package ‘clipr’ successfully unpacked and MD5 sums checked
  478. ** R
  479. ** inst
  480. ** byte-compile and prepare package for lazy loading
  481. ** help
  482. *** installing help indices
  483. ** building package indices
  484. ** testing if installed package can be loaded
  485. * DONE (clipr)
  486. * installing *source* package ‘clisymbols’ ...
  487. ** package ‘clisymbols’ successfully unpacked and MD5 sums checked
  488. ** R
  489. ** inst
  490. ** byte-compile and prepare package for lazy loading
  491. ** help
  492. *** installing help indices
  493. ** building package indices
  494. ** testing if installed package can be loaded
  495. * DONE (clisymbols)
  496. * installing *source* package ‘fs’ ...
  497. ** package ‘fs’ successfully unpacked and MD5 sums checked
  498. ** libs
  499. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c error.cc -o error.o
  500. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c dir.cc -o dir.o
  501. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c utils.cc -o utils.o
  502. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c link.cc -o link.o
  503. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c path.cc -o path.o
  504. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c file.cc -o file.o
  505. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c fs.cc -o fs.o
  506. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c id.cc -o id.o
  507. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c unix/getmode.cc -o unix/getmode.o
  508. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c RcppExports.cpp -o RcppExports.o
  509. cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
  510. (cd libuv \
  511.     && touch aclocal.m4 \
  512.     && touch -r aclocal.m4 configure Makefile.in \
  513. && CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/[user]/anaconda3/lib -L/Users/[user]/anaconda3/lib" ./configure --quiet)
  514. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpvzRhzC/R.INSTALL83d75a99468/fs/src/libuv':
  515. configure: error: C compiler cannot create executables
  516. See `config.log' for more details
  517. make: *** [Makevars:32: libuv/Makefile] Error 77
  518. ERROR: compilation failed for package ‘fs’
  519. * removing ‘/Users/[user]/anaconda3/lib/R/library/fs’
  520. * installing *source* package ‘whisker’ ...
  521. ** package ‘whisker’ successfully unpacked and MD5 sums checked
  522. ** R
  523. ** inst
  524. ** byte-compile and prepare package for lazy loading
  525. ** help
  526. *** installing help indices
  527. ** building package indices
  528. ** testing if installed package can be loaded
  529. * DONE (whisker)
  530. * installing *source* package ‘git2r’ ...
  531. ** package ‘git2r’ successfully unpacked and MD5 sums checked
  532. checking build system type... x86_64-apple-darwin18.2.0
  533. checking host system type... x86_64-apple-darwin18.2.0
  534. checking for gcc... x86_64-apple-darwin13.4.0-clang
  535. checking whether the C compiler works... no
  536. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpsM7bpR/R.INSTALL9545691fd31/git2r':
  537. configure: error: C compiler cannot create executables
  538. See `config.log' for more details
  539. ERROR: configuration failed for package ‘git2r’
  540. * removing ‘/Users/[user]/anaconda3/lib/R/library/git2r’
  541. * installing *source* package ‘memoise’ ...
  542. ** package ‘memoise’ successfully unpacked and MD5 sums checked
  543. ** R
  544. ** byte-compile and prepare package for lazy loading
  545. ** help
  546. *** installing help indices
  547. ** building package indices
  548. ** testing if installed package can be loaded
  549. * DONE (memoise)
  550. * installing *source* package ‘remotes’ ...
  551. ** package ‘remotes’ successfully unpacked and MD5 sums checked
  552. ** R
  553. ** inst
  554. ** byte-compile and prepare package for lazy loading
  555. ** help
  556. *** installing help indices
  557. ** building package indices
  558. ** installing vignettes
  559. ** testing if installed package can be loaded
  560. * DONE (remotes)
  561. * installing *source* package ‘sessioninfo’ ...
  562. ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked
  563. ** R
  564. ** inst
  565. ** byte-compile and prepare package for lazy loading
  566. ** help
  567. *** installing help indices
  568. ** building package indices
  569. ** testing if installed package can be loaded
  570. * DONE (sessioninfo)
  571. ERROR: dependency ‘ps’ is not available for package ‘processx’
  572. * removing ‘/Users/[user]/anaconda3/lib/R/library/processx’
  573. * installing *source* package ‘gh’ ...
  574. ** package ‘gh’ successfully unpacked and MD5 sums checked
  575. ** R
  576. ** inst
  577. ** byte-compile and prepare package for lazy loading
  578. ** help
  579. *** installing help indices
  580. ** building package indices
  581. ** testing if installed package can be loaded
  582. * DONE (gh)
  583. ERROR: dependency ‘processx’ is not available for package ‘xopen’
  584. * removing ‘/Users/[user]/anaconda3/lib/R/library/xopen’
  585. ERROR: dependency ‘processx’ is not available for package ‘callr’
  586. * removing ‘/Users/[user]/anaconda3/lib/R/library/callr’
  587. ERROR: dependencies ‘fs’, ‘git2r’ are not available for package ‘usethis’
  588. * removing ‘/Users/[user]/anaconda3/lib/R/library/usethis’
  589. ERROR: dependency ‘callr’ is not available for package ‘pkgbuild’
  590. * removing ‘/Users/[user]/anaconda3/lib/R/library/pkgbuild’
  591. ERROR: dependency ‘pkgbuild’ is not available for package ‘pkgload’
  592. * removing ‘/Users/[user]/anaconda3/lib/R/library/pkgload’
  593. ERROR: dependencies ‘callr’, ‘pkgbuild’, ‘xopen’ are not available for package ‘rcmdcheck’
  594. * removing ‘/Users/[user]/anaconda3/lib/R/library/rcmdcheck’
  595. ERROR: dependencies ‘callr’, ‘git2r’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘usethis’ are not available for package ‘devtools’
  596. * removing ‘/Users/[user]/anaconda3/lib/R/library/devtools’
  597.  
  598. The downloaded source packages are in
  599.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpkN4iJB/downloaded_packages’
  600. Updating HTML index of packages in '.Library'
  601. Making 'packages.html' ... done
  602. There were 11 warnings (use warnings() to see them)
  603. > warnings()
  604. Warning messages:
  605. 1: In install.packages("devtools") :
  606.   installation of package ‘ps’ had non-zero exit status
  607. 2: In install.packages("devtools") :
  608.   installation of package ‘fs’ had non-zero exit status
  609. 3: In install.packages("devtools") :
  610.   installation of package ‘git2r’ had non-zero exit status
  611. 4: In install.packages("devtools") :
  612.   installation of package ‘processx’ had non-zero exit status
  613. 5: In install.packages("devtools") :
  614.   installation of package ‘xopen’ had non-zero exit status
  615. 6: In install.packages("devtools") :
  616.   installation of package ‘callr’ had non-zero exit status
  617. 7: In install.packages("devtools") :
  618.   installation of package ‘usethis’ had non-zero exit status
  619. 8: In install.packages("devtools") :
  620.   installation of package ‘pkgbuild’ had non-zero exit status
  621. 9: In install.packages("devtools") :
  622.   installation of package ‘pkgload’ had non-zero exit status
  623. 10: In install.packages("devtools") :
  624.   installation of package ‘rcmdcheck’ had non-zero exit status
  625. 11: In install.packages("devtools") :
  626.   installation of package ‘devtools’ had non-zero exit status
  627. > install.packages(callr)
  628. Error in install.packages(callr) : object 'callr' not found
  629. > install.packages("callr")
  630. also installing the dependencies ‘ps’, ‘processx’
  631.  
  632. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/ps_1.3.0.tar.gz'
  633. Content type 'application/x-gzip' length 261887 bytes (255 KB)
  634. ==================================================
  635. downloaded 255 KB
  636.  
  637. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/processx_3.2.1.tar.gz'
  638. Content type 'application/x-gzip' length 101057 bytes (98 KB)
  639. ==================================================
  640. downloaded 98 KB
  641.  
  642. trying URL 'https://cran.cnr.berkeley.edu/src/contrib/callr_3.1.1.tar.gz'
  643. Content type 'application/x-gzip' length 41273 bytes (40 KB)
  644. ==================================================
  645. downloaded 40 KB
  646.  
  647. * installing *source* package ‘ps’ ...
  648. ** package ‘ps’ successfully unpacked and MD5 sums checked
  649. ** libs
  650. x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -Wall px.c -o px
  651. ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
  652. Undefined symbols for architecture x86_64:
  653.   "___error", referenced from:
  654.       _echo_from_fd in px-fac98a.o
  655.   "___stack_chk_fail", referenced from:
  656.       _cat2 in px-fac98a.o
  657.       _cat in px-fac98a.o
  658.       _echo_from_fd in px-fac98a.o
  659.       _main in px-fac98a.o
  660.   "___stack_chk_guard", referenced from:
  661.       _cat2 in px-fac98a.o
  662.       _cat in px-fac98a.o
  663.       _echo_from_fd in px-fac98a.o
  664.       _main in px-fac98a.o
  665.   "___stderrp", referenced from:
  666.       _usage in px-fac98a.o
  667.       _cat2 in px-fac98a.o
  668.       _cat in px-fac98a.o
  669.       _write_to_fd in px-fac98a.o
  670.       _echo_from_fd in px-fac98a.o
  671.       _main in px-fac98a.o
  672.   "___stdoutp", referenced from:
  673.       _echo_from_fd in px-fac98a.o
  674.       _main in px-fac98a.o
  675.   "_close", referenced from:
  676.       _cat in px-fac98a.o
  677.   "_exit", referenced from:
  678.       _cat2 in px-fac98a.o
  679.       _cat in px-fac98a.o
  680.   "_fflush", referenced from:
  681.       _echo_from_fd in px-fac98a.o
  682.       _main in px-fac98a.o
  683.   "_fprintf", referenced from:
  684.       _cat2 in px-fac98a.o
  685.       _cat in px-fac98a.o
  686.       _write_to_fd in px-fac98a.o
  687.       _echo_from_fd in px-fac98a.o
  688.       _main in px-fac98a.o
  689.   "_fputs", referenced from:
  690.       _main in px-fac98a.o
  691.   "_fwrite", referenced from:
  692.       _usage in px-fac98a.o
  693.       _main in px-fac98a.o
  694.   "_getenv", referenced from:
  695.       _main in px-fac98a.o
  696.   "_open", referenced from:
  697.       _cat in px-fac98a.o
  698.   "_printf", referenced from:
  699.       _main in px-fac98a.o
  700.   "_puts", referenced from:
  701.       _main in px-fac98a.o
  702.   "_read", referenced from:
  703.       _cat2 in px-fac98a.o
  704.       _cat in px-fac98a.o
  705.       _echo_from_fd in px-fac98a.o
  706.   "_sleep", referenced from:
  707.       _main in px-fac98a.o
  708.   "_sscanf", referenced from:
  709.       _main in px-fac98a.o
  710.   "_strcmp", referenced from:
  711.       _main in px-fac98a.o
  712.   "_strerror", referenced from:
  713.       _echo_from_fd in px-fac98a.o
  714.   "_strlen", referenced from:
  715.       _write_to_fd in px-fac98a.o
  716.       _echo_from_fd in px-fac98a.o
  717.       _main in px-fac98a.o
  718.   "_usleep", referenced from:
  719.       _main in px-fac98a.o
  720.   "_write", referenced from:
  721.       _cat2 in px-fac98a.o
  722.       _cat in px-fac98a.o
  723.       _write_to_fd in px-fac98a.o
  724.       _echo_from_fd in px-fac98a.o
  725.       _main in px-fac98a.o
  726.      (maybe you meant: _write_to_fd)
  727. ld: symbol(s) not found for architecture x86_64
  728. clang-4.0: error: linker command failed with exit code 1 (use -v to see invocation)
  729. make: *** [Makevars:11: px] Error 1
  730. ERROR: compilation failed for package ‘ps’
  731. * removing ‘/Users/[user]/anaconda3/lib/R/library/ps’
  732. ERROR: dependency ‘ps’ is not available for package ‘processx’
  733. * removing ‘/Users/[user]/anaconda3/lib/R/library/processx’
  734. ERROR: dependency ‘processx’ is not available for package ‘callr’
  735. * removing ‘/Users/[user]/anaconda3/lib/R/library/callr’
  736.  
  737. The downloaded source packages are in
  738.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpkN4iJB/downloaded_packages’
  739. Updating HTML index of packages in '.Library'
  740. Making 'packages.html' ... done
  741. Warning messages:
  742. 1: In install.packages("callr") :
  743.   installation of package ‘ps’ had non-zero exit status
  744. 2: In install.packages("callr") :
  745.   installation of package ‘processx’ had non-zero exit status
  746. 3: In install.packages("callr") :
  747.   installation of package ‘callr’ had non-zero exit status
  748. >
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