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misnomer001

yamnaya InPe fail

misnomer001
Feb 7th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1864390664
  4. read 1073741824 bytes
  5. read 1324255962 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Yamnaya_Samara
  11. EEHG
  12. Georgia_Kotias.SG
  13. Ukraine_Globular_Amphora
  14. InPe
  15.  
  16. right pops:
  17. Russia_MA1_HG
  18. Italy_Villabruna
  19. Russia_Kostenki14
  20. Luxembourg_Loschbour
  21. Anatolia_N
  22. Czech_Vestonice16
  23. Morocco_Iberomaurusian
  24. Russia_Shamanka_EN.SG
  25. Georgia_Satsurblia.SG
  26. Ganj_Dareh_N
  27. Onge.DG
  28. SE_Iberia_MLN
  29. PPN
  30.  
  31. 0 Russia_Yamnaya_Samara 8
  32. 1 EEHG 5
  33. 2 Georgia_Kotias.SG 1
  34. 3 Ukraine_Globular_Amphora 3
  35. 4 InPe 11
  36. 5 Russia_MA1_HG 1
  37. 6 Italy_Villabruna 1
  38. 7 Russia_Kostenki14 1
  39. 8 Luxembourg_Loschbour 1
  40. 9 Anatolia_N 23
  41. 10 Czech_Vestonice16 1
  42. 11 Morocco_Iberomaurusian 6
  43. 12 Russia_Shamanka_EN.SG 10
  44. 13 Georgia_Satsurblia.SG 1
  45. 14 Ganj_Dareh_N 8
  46. 15 Onge.DG 2
  47. 16 SE_Iberia_MLN 14
  48. 17 PPN 8
  49. jackknife block size: 0.050
  50. snps: 1150469 indivs: 105
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150469
  53. coverage: Russia_Yamnaya_Samara 1092113
  54. coverage: EEHG 1052093
  55. coverage: Georgia_Kotias.SG 1149097
  56. coverage: Ukraine_Globular_Amphora 1036892
  57. coverage: InPe 934171
  58. coverage: Russia_MA1_HG 805960
  59. coverage: Italy_Villabruna 883779
  60. coverage: Russia_Kostenki14 1068326
  61. coverage: Luxembourg_Loschbour 460892
  62. coverage: Anatolia_N 1136560
  63. coverage: Czech_Vestonice16 732091
  64. coverage: Morocco_Iberomaurusian 1101342
  65. coverage: Russia_Shamanka_EN.SG 1149998
  66. coverage: Georgia_Satsurblia.SG 801311
  67. coverage: Ganj_Dareh_N 1057358
  68. coverage: Onge.DG 1120748
  69. coverage: SE_Iberia_MLN 985553
  70. coverage: PPN 835499
  71. dof (jackknife): 614.254
  72. numsnps used: 1150469
  73. codimension 1
  74. f4info:
  75. f4rank: 3 dof: 9 chisq: 35.998 tail: 3.96717296e-05 dofdiff: 11 chisqdiff: -35.998 taildiff: 1
  76. B:
  77. scale 1.000 1.000 1.000
  78. Italy_Villabruna 0.710 1.632 0.844
  79. Russia_Kostenki14 0.794 0.215 -0.068
  80. Luxembourg_Loschbour 0.373 0.964 0.632
  81. Anatolia_N 1.499 0.850 0.563
  82. Czech_Vestonice16 0.702 0.478 -0.109
  83. Morocco_Iberomaurusian 1.160 0.001 -0.261
  84. Russia_Shamanka_EN.SG 0.654 -0.845 -1.243
  85. Georgia_Satsurblia.SG 0.892 -1.437 2.206
  86. Ganj_Dareh_N 1.094 -1.445 -0.497
  87. Onge.DG 0.875 -1.072 -1.844
  88. SE_Iberia_MLN 1.325 1.059 0.654
  89. PPN 1.303 0.520 -0.022
  90. A:
  91. scale 281.993 610.610 1133.293
  92. EEHG -1.115 0.619 -0.367
  93. Georgia_Kotias.SG 0.783 -1.246 1.272
  94. Ukraine_Globular_Amphora 1.397 1.224 -0.418
  95. InPe 0.438 -0.752 -1.439
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 35.998 taildiff: 3.96717296e-05
  101. B:
  102. scale 266.743 253.965 173.800 377.449
  103. Italy_Villabruna -0.284 0.082 1.197 -0.593
  104. Russia_Kostenki14 -0.730 0.542 0.818 0.541
  105. Luxembourg_Loschbour -0.169 0.007 0.641 -0.466
  106. Anatolia_N -1.340 0.925 1.598 0.354
  107. Czech_Vestonice16 -0.507 0.378 0.851 0.396
  108. Morocco_Iberomaurusian -1.115 0.956 1.074 0.967
  109. Russia_Shamanka_EN.SG -0.661 0.790 0.445 1.574
  110. Georgia_Satsurblia.SG -1.387 2.267 0.219 0.301
  111. Ganj_Dareh_N -1.525 1.420 0.487 1.604
  112. Onge.DG -0.957 0.869 0.571 2.069
  113. SE_Iberia_MLN -1.102 0.719 1.529 0.135
  114. PPN -1.115 0.857 1.382 0.696
  115. A:
  116. scale 2.000 2.000 2.000 2.000
  117. EEHG 2.000 0.000 0.000 0.000
  118. Georgia_Kotias.SG 0.000 2.000 0.000 0.000
  119. Ukraine_Globular_Amphora 0.000 0.000 2.000 0.000
  120. InPe 0.000 0.000 0.000 2.000
  121.  
  122.  
  123. best coefficients: 0.441 0.300 0.149 0.109
  124. Jackknife mean: 0.441537619 0.299496229 0.149220700 0.109745452
  125. std. errors: 0.020 0.024 0.014 0.025
  126.  
  127. error covariance (* 1,000,000)
  128. 399 -4 -138 -256
  129. -4 599 -129 -465
  130. -138 -129 196 72
  131. -256 -465 72 650
  132.  
  133.  
  134. summ: Russia_Yamnaya_Samara 4 0.000040 0.442 0.299 0.149 0.110 399 -4 -138 -256 599 ...
  135. -129 -465 196 72 650
  136.  
  137. fixed pat wt dof chisq tail prob
  138. 0000 0 9 35.998 3.96717e-05 0.441 0.300 0.149 0.109
  139. 0001 1 10 53.549 5.88638e-08 0.484 0.382 0.134 0.000
  140. 0010 1 10 130.098 4.46069e-23 0.549 0.438 0.000 0.013
  141. 0100 1 10 224.731 0 0.452 0.000 0.204 0.344
  142. 1000 1 10 466.926 0 0.000 1.196 0.084 -0.280 infeasible
  143. 0011 2 11 125.440 1.4528e-21 0.548 0.452 0.000 0.000
  144. 0101 2 11 501.727 0 0.785 0.000 0.215 0.000
  145. 0110 2 11 427.666 0 0.651 0.000 0.000 0.349
  146. 1001 2 11 466.051 0 0.000 0.813 0.187 0.000
  147. 1010 2 11 473.255 0 0.000 1.357 0.000 -0.357 infeasible
  148. 1100 2 11 603.555 0 0.000 0.000 0.377 0.623
  149. 0111 3 12 639.751 0 1.000 0.000 0.000 0.000
  150. 1011 3 12 502.305 0 0.000 1.000 0.000 0.000
  151. 1101 3 12 1713.594 0 0.000 0.000 1.000 0.000
  152. 1110 3 12 1116.681 0 0.000 0.000 0.000 1.000
  153. best pat: 0000 3.96717e-05 - -
  154. best pat: 0001 5.88638e-08 chi(nested): 17.551 p-value for nested model: 2.79738e-05
  155. best pat: 0011 1.4528e-21 chi(nested): 71.891 p-value for nested model: 2.27391e-17
  156. best pat: 1011 7.16182e-100 chi(nested): 376.865 p-value for nested model: 5.99198e-84
  157.  
  158. coeffs: 0.441 0.300 0.149 0.109
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: EEHG Italy_Villabruna -0.001063 -2.990158
  164. details: Georgia_Kotias.SG Italy_Villabruna 0.000324 0.740715
  165. details: Ukraine_Globular_Amphora Italy_Villabruna 0.006887 19.346546
  166. details: InPe Italy_Villabruna -0.001571 -4.997820
  167. dscore: Italy_Villabruna f4: 0.000486 Z: 1.927623
  168.  
  169. details: EEHG Russia_Kostenki14 -0.002736 -7.375934
  170. details: Georgia_Kotias.SG Russia_Kostenki14 0.002135 4.706016
  171. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.004709 12.623162
  172. details: InPe Russia_Kostenki14 0.001434 4.435090
  173. dscore: Russia_Kostenki14 f4: 0.000295 Z: 1.153549
  174.  
  175. details: EEHG Luxembourg_Loschbour -0.000635 -2.500858
  176. details: Georgia_Kotias.SG Luxembourg_Loschbour 0.000026 0.087378
  177. details: Ukraine_Globular_Amphora Luxembourg_Loschbour 0.003689 14.746008
  178. details: InPe Luxembourg_Loschbour -0.001233 -5.081777
  179. dscore: Luxembourg_Loschbour f4: 0.000144 Z: 0.811657
  180.  
  181. details: EEHG Anatolia_N -0.005024 -16.193598
  182. details: Georgia_Kotias.SG Anatolia_N 0.003642 8.955797
  183. details: Ukraine_Globular_Amphora Anatolia_N 0.009194 28.994718
  184. details: InPe Anatolia_N 0.000937 3.396182
  185. dscore: Anatolia_N f4: 0.000354 Z: 1.541346
  186.  
  187. details: EEHG Czech_Vestonice16 -0.001902 -6.006100
  188. details: Georgia_Kotias.SG Czech_Vestonice16 0.001487 3.805890
  189. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.004896 15.405402
  190. details: InPe Czech_Vestonice16 0.001048 3.550519
  191. dscore: Czech_Vestonice16 f4: 0.000454 Z: 1.947945
  192.  
  193. details: EEHG Morocco_Iberomaurusian -0.004180 -12.798304
  194. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.003766 8.484689
  195. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.006181 18.717090
  196. details: InPe Morocco_Iberomaurusian 0.002562 8.546385
  197. dscore: Morocco_Iberomaurusian f4: 0.000491 Z: 2.020698
  198.  
  199. details: EEHG Russia_Shamanka_EN.SG -0.002478 -8.185223
  200. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.003110 7.783934
  201. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.002560 8.766507
  202. details: InPe Russia_Shamanka_EN.SG 0.004170 14.757144
  203. dscore: Russia_Shamanka_EN.SG f4: 0.000680 Z: 3.151458
  204.  
  205. details: EEHG Georgia_Satsurblia.SG -0.005200 -16.450262
  206. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.008925 18.908296
  207. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.001257 3.889174
  208. details: InPe Georgia_Satsurblia.SG 0.000797 2.757482
  209. dscore: Georgia_Satsurblia.SG f4: 0.000661 Z: 2.681510
  210.  
  211. details: EEHG Ganj_Dareh_N -0.005719 -17.752941
  212. details: Georgia_Kotias.SG Ganj_Dareh_N 0.005591 13.245772
  213. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.002800 8.761774
  214. details: InPe Ganj_Dareh_N 0.004249 15.529652
  215. dscore: Ganj_Dareh_N f4: 0.000040 Z: 0.169818
  216.  
  217. details: EEHG Onge.DG -0.003589 -10.915758
  218. details: Georgia_Kotias.SG Onge.DG 0.003422 7.694462
  219. details: Ukraine_Globular_Amphora Onge.DG 0.003283 10.044688
  220. details: InPe Onge.DG 0.005481 18.017372
  221. dscore: Onge.DG f4: 0.000535 Z: 2.255828
  222.  
  223. details: EEHG SE_Iberia_MLN -0.004132 -13.597844
  224. details: Georgia_Kotias.SG SE_Iberia_MLN 0.002833 7.249660
  225. details: Ukraine_Globular_Amphora SE_Iberia_MLN 0.008797 27.732964
  226. details: InPe SE_Iberia_MLN 0.000358 1.328137
  227. dscore: SE_Iberia_MLN f4: 0.000382 Z: 1.700471
  228.  
  229. details: EEHG PPN -0.004180 -14.334778
  230. details: Georgia_Kotias.SG PPN 0.003376 8.844733
  231. details: Ukraine_Globular_Amphora PPN 0.007951 25.066559
  232. details: InPe PPN 0.001843 6.630209
  233. dscore: PPN f4: 0.000560 Z: 2.546365
  234.  
  235. gendstat: Russia_MA1_HG Italy_Villabruna 1.928
  236. gendstat: Russia_MA1_HG Russia_Kostenki14 1.154
  237. gendstat: Russia_MA1_HG Luxembourg_Loschbour 0.812
  238. gendstat: Russia_MA1_HG Anatolia_N 1.541
  239. gendstat: Russia_MA1_HG Czech_Vestonice16 1.948
  240. gendstat: Russia_MA1_HG Morocco_Iberomaurusian 2.021
  241. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 3.151
  242. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 2.682
  243. gendstat: Russia_MA1_HG Ganj_Dareh_N 0.170
  244. gendstat: Russia_MA1_HG Onge.DG 2.256
  245. gendstat: Russia_MA1_HG SE_Iberia_MLN 1.700
  246. gendstat: Russia_MA1_HG PPN 2.546
  247. gendstat: Italy_Villabruna Russia_Kostenki14 -0.783
  248. gendstat: Italy_Villabruna Luxembourg_Loschbour -1.554
  249. gendstat: Italy_Villabruna Anatolia_N -0.666
  250. gendstat: Italy_Villabruna Czech_Vestonice16 -0.131
  251. gendstat: Italy_Villabruna Morocco_Iberomaurusian 0.024
  252. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG 0.911
  253. gendstat: Italy_Villabruna Georgia_Satsurblia.SG 0.665
  254. gendstat: Italy_Villabruna Ganj_Dareh_N -2.038
  255. gendstat: Italy_Villabruna Onge.DG 0.209
  256. gendstat: Italy_Villabruna SE_Iberia_MLN -0.521
  257. gendstat: Italy_Villabruna PPN 0.334
  258. gendstat: Russia_Kostenki14 Luxembourg_Loschbour -0.611
  259. gendstat: Russia_Kostenki14 Anatolia_N 0.294
  260. gendstat: Russia_Kostenki14 Czech_Vestonice16 0.654
  261. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 0.872
  262. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 1.919
  263. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 1.406
  264. gendstat: Russia_Kostenki14 Ganj_Dareh_N -1.181
  265. gendstat: Russia_Kostenki14 Onge.DG 1.085
  266. gendstat: Russia_Kostenki14 SE_Iberia_MLN 0.406
  267. gendstat: Russia_Kostenki14 PPN 1.192
  268. gendstat: Luxembourg_Loschbour Anatolia_N 1.027
  269. gendstat: Luxembourg_Loschbour Czech_Vestonice16 1.344
  270. gendstat: Luxembourg_Loschbour Morocco_Iberomaurusian 1.517
  271. gendstat: Luxembourg_Loschbour Russia_Shamanka_EN.SG 2.565
  272. gendstat: Luxembourg_Loschbour Georgia_Satsurblia.SG 2.095
  273. gendstat: Luxembourg_Loschbour Ganj_Dareh_N -0.479
  274. gendstat: Luxembourg_Loschbour Onge.DG 1.729
  275. gendstat: Luxembourg_Loschbour SE_Iberia_MLN 1.142
  276. gendstat: Luxembourg_Loschbour PPN 1.997
  277. gendstat: Anatolia_N Czech_Vestonice16 0.482
  278. gendstat: Anatolia_N Morocco_Iberomaurusian 0.865
  279. gendstat: Anatolia_N Russia_Shamanka_EN.SG 2.207
  280. gendstat: Anatolia_N Georgia_Satsurblia.SG 1.540
  281. gendstat: Anatolia_N Ganj_Dareh_N -2.234
  282. gendstat: Anatolia_N Onge.DG 1.059
  283. gendstat: Anatolia_N SE_Iberia_MLN 0.251
  284. gendstat: Anatolia_N PPN 1.490
  285. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian 0.164
  286. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG 1.075
  287. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 0.763
  288. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.862
  289. gendstat: Czech_Vestonice16 Onge.DG 0.346
  290. gendstat: Czech_Vestonice16 SE_Iberia_MLN -0.345
  291. gendstat: Czech_Vestonice16 PPN 0.482
  292. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG 1.087
  293. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.749
  294. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -2.527
  295. gendstat: Morocco_Iberomaurusian Onge.DG 0.226
  296. gendstat: Morocco_Iberomaurusian SE_Iberia_MLN -0.620
  297. gendstat: Morocco_Iberomaurusian PPN 0.375
  298. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -0.086
  299. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -3.955
  300. gendstat: Russia_Shamanka_EN.SG Onge.DG -0.947
  301. gendstat: Russia_Shamanka_EN.SG SE_Iberia_MLN -1.836
  302. gendstat: Russia_Shamanka_EN.SG PPN -0.672
  303. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -3.061
  304. gendstat: Georgia_Satsurblia.SG Onge.DG -0.563
  305. gendstat: Georgia_Satsurblia.SG SE_Iberia_MLN -1.286
  306. gendstat: Georgia_Satsurblia.SG PPN -0.457
  307. gendstat: Ganj_Dareh_N Onge.DG 2.759
  308. gendstat: Ganj_Dareh_N SE_Iberia_MLN 2.129
  309. gendstat: Ganj_Dareh_N PPN 2.941
  310. gendstat: Onge.DG SE_Iberia_MLN -0.812
  311. gendstat: Onge.DG PPN 0.124
  312. gendstat: SE_Iberia_MLN PPN 1.163
  313.  
  314. ##end of qpAdm: 256.097 seconds cpu 1441.575 Mbytes in use
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