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  1. recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean -hemi lh -curvstats
  2. Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  3. Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  4. INFO: SUBJECTS_DIR is /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS
  5. Actual FREESURFER_HOME /space/nnac/alzheimer_center/pubsw/freesurfer
  6. -rw-rw-r-- 1 tmhqxf2 nnacusers 1385798 Jul 27 17:12 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.log
  7. '/space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all' -> '/space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.local-copy'
  8.  
  9. #-----------------------------------------
  10. #@# Curvature Stats lh Fri Jul 27 17:12:34 CDT 2018
  11. /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/surf
  12.  
  13. mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm pp_cabirean lh curv sulc
  14.  
  15. Toggling save flag on curvature files [ ok ]
  16. Outputting results using filestem [ ../stats/lh.curv.stats ]
  17. Toggling save flag on curvature files [ ok ]
  18. Setting surface [ pp_cabirean/lh.smoothwm ]
  19. Reading surface... [ ok ]
  20. Setting texture [ curv ]
  21. Reading texture...MRISreadNewCurvature: incompatible vertex number in file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/surf/lh.curv
  22. No such file or directory
  23.  
  24. ***WARNING!***
  25. Some error has occurred while reading 'lh.curv'.
  26. This might be due a vertex incompatibility
  27. between the surface 'lh.smoothwm' and curv 'lh.curv'.
  28.  
  29. You might be able to correct this by re-running
  30. 'mris_make_surfaces' on this dataset.
  31.  
  32. Skipping this (and any remaining) curvature files.
  33. Any measurements / calcuations that depend on the
  34. curvature file will be skipped.
  35. *************
  36.  
  37. Calculating Discrete Principal Curvatures...
  38. Determining geometric order for vertex faces... [####################] [ ok ]
  39. Determining KH curvatures... [####################] [ ok ]
  40. Determining k1k2 curvatures... [####################] [ ok ]
  41. deltaViolations [ 204 ]
  42.  
  43. WARN: k2 lookup min: -10.992953
  44. WARN: k2 explicit min: -9.614408 vertex = 76670
  45.  
  46. WARN: S lookup min: -0.991184
  47. WARN: S explicit min: 0.000000 vertex = 335
  48.  
  49. WARN: C lookup max: 100.035385
  50. WARN: C explicit max: 76.842728 vertex = 88263
  51.  
  52. Started at Fri Jul 27 17:12:34 CDT 2018
  53. Ended at Fri Jul 27 17:12:37 CDT 2018
  54. #@#%# recon-all-run-time-hours 0.001
  55. recon-all -s pp_cabirean finished without error at Fri Jul 27 17:12:37 CDT 2018
  56. done
  57. recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean -hemi rh -curvstats
  58. Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  59. Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  60. INFO: SUBJECTS_DIR is /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS
  61. Actual FREESURFER_HOME /space/nnac/alzheimer_center/pubsw/freesurfer
  62. -rw-rw-r-- 1 tmhqxf2 nnacusers 1388427 Jul 27 17:12 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.log
  63. '/space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all' -> '/space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.local-copy'
  64.  
  65. #-----------------------------------------
  66. #@# Curvature Stats rh Fri Jul 27 17:12:37 CDT 2018
  67. /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/surf
  68.  
  69. mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm pp_cabirean rh curv sulc
  70.  
  71. Toggling save flag on curvature files [ ok ]
  72. Outputting results using filestem [ ../stats/rh.curv.stats ]
  73. Toggling save flag on curvature files [ ok ]
  74. Setting surface [ pp_cabirean/rh.smoothwm ]
  75. Reading surface... [ ok ]
  76. Setting texture [ curv ]
  77. Reading texture...MRISreadNewCurvature: incompatible vertex number in file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/surf/rh.curv
  78. No such file or directory
  79.  
  80. ***WARNING!***
  81. Some error has occurred while reading 'rh.curv'.
  82. This might be due a vertex incompatibility
  83. between the surface 'rh.smoothwm' and curv 'rh.curv'.
  84.  
  85. You might be able to correct this by re-running
  86. 'mris_make_surfaces' on this dataset.
  87.  
  88. Skipping this (and any remaining) curvature files.
  89. Any measurements / calcuations that depend on the
  90. curvature file will be skipped.
  91. *************
  92.  
  93. Calculating Discrete Principal Curvatures...
  94. Determining geometric order for vertex faces... [####################] [ ok ]
  95. Determining KH curvatures... [####################] [ ok ]
  96. Determining k1k2 curvatures... [####################] [ ok ]
  97. deltaViolations [ 187 ]
  98.  
  99. WARN: S lookup min: -0.474639
  100. WARN: S explicit min: 0.000000 vertex = 35
  101.  
  102. Started at Fri Jul 27 17:12:37 CDT 2018
  103. Ended at Fri Jul 27 17:12:40 CDT 2018
  104. #@#%# recon-all-run-time-hours 0.001
  105. recon-all -s pp_cabirean finished without error at Fri Jul 27 17:12:40 CDT 2018
  106. done
  107. recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean -hemi lh -jacobian_white
  108. Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  109. Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
  110. INFO: SUBJECTS_DIR is /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS
  111. Actual FREESURFER_HOME /space/nnac/alzheimer_center/pubsw/freesurfer
  112. -rw-rw-r-- 1 tmhqxf2 nnacusers 1390781 Jul 27 17:12 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.log
  113. '/space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all' -> '/space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.local-copy'
  114. #--------------------------------------------
  115. #@# Jacobian white lh Fri Jul 27 17:12:40 CDT 2018
  116. /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts
  117.  
  118. mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
  119.  
  120. reading surface from ../surf/lh.white.preaparc...
  121. mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match ../surf/lh.white.preaparc
  122.  
  123. No such file or directory
  124. mrisReadTriangleFile failed.
  125.  
  126. No such file or directory
  127. mris_jacobian: could not read target surface ../surf/lh.sphere.reg
  128. No such file or directory
  129. Linux picasso 3.10.0-862.9.1.el7.x86_64 #1 SMP Mon Jul 16 16:29:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
  130.  
  131. recon-all -s pp_cabirean exited with ERRORS at Fri Jul 27 17:12:41 CDT 2018
  132.  
  133. For more details, see the log file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/scripts/recon-all.log
  134. To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
  135.  
  136. make: *** [/space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_cabirean/surf/lh.jacobian_white] Error 1
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