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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1626384256
- read 1073741824 bytes
- read 2146675633 bytes
- packed geno read OK
- end of inpack
- left pops:
- Kyrgyzstan_BA_Aygirdjal
- Kazakhstan_Dali_EBA
- Tajikistan_C_Sarazm
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- 0 Kyrgyzstan_BA_Aygirdjal 2
- 1 Kazakhstan_Dali_EBA 1
- 2 Tajikistan_C_Sarazm 2
- 3 Cameroon_SMA.DG 1
- 4 EEHG 5
- 5 WSHG 3
- 6 PPN 11
- 7 WEHG 33
- 8 Anatolia_N 22
- 9 Iran_GanjDareh_N 8
- 10 Russia_UstBelaya_Angara 8
- 11 ONG.SG 6
- 12 Botai 2
- jackknife block size: 0.050
- snps: 1150505 indivs: 104
- number of blocks for block jackknife: 713
- ## ncols: 1150505
- coverage: Kyrgyzstan_BA_Aygirdjal 818114
- coverage: Kazakhstan_Dali_EBA 774708
- coverage: Tajikistan_C_Sarazm 867960
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- dof (jackknife): 622.324
- numsnps used: 1150505
- codimension 1
- f4info:
- f4rank: 1 dof: 8 chisq: 12.543 tail: 0.12858661 dofdiff: 10 chisqdiff: -12.543 taildiff: 1
- B:
- scale 1.000
- EEHG 1.272
- WSHG 1.617
- PPN 0.068
- WEHG 0.761
- Anatolia_N 0.030
- Iran_GanjDareh_N -0.422
- Russia_UstBelaya_Angara 1.111
- ONG.SG 0.443
- Botai 1.605
- A:
- scale 351.850
- Kazakhstan_Dali_EBA 1.225
- Tajikistan_C_Sarazm -0.707
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 12.543 taildiff: 0.12858661
- B:
- scale 273.551 535.631
- EEHG 1.225 -1.369
- WSHG 1.707 -1.449
- PPN 0.066 -0.052
- WEHG 0.676 -0.890
- Anatolia_N 0.030 -0.009
- Iran_GanjDareh_N -0.291 0.692
- Russia_UstBelaya_Angara 1.176 -0.981
- ONG.SG 0.444 -0.441
- Botai 1.567 -1.611
- A:
- scale 1.414 1.414
- Kazakhstan_Dali_EBA 1.414 0.000
- Tajikistan_C_Sarazm 0.000 1.414
- best coefficients: 0.366 0.634
- Jackknife mean: 0.365684134 0.634315866
- std. errors: 0.025 0.025
- error covariance (* 1,000,000)
- 618 -618
- -618 618
- summ: Kyrgyzstan_BA_Aygirdjal 2 0.128587 0.366 0.634 618 -618 618
- fixed pat wt dof chisq tail prob
- 00 0 8 12.543 0.128587 0.366 0.634
- 01 1 9 444.693 0 1.000 0.000
- 10 1 9 184.097 0 0.000 1.000
- best pat: 00 0.128587 - -
- best pat: 10 7.06041e-35 chi(nested): 171.555 p-value for nested model: 3.38532e-39
- coeffs: 0.366 0.634
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Kazakhstan_Dali_EBA EEHG 0.004478 10.669044
- details: Tajikistan_C_Sarazm EEHG -0.002555 -7.014797
- dscore: EEHG f4: 0.000019 Z: 0.060227
- details: Kazakhstan_Dali_EBA WSHG 0.006241 13.124728
- details: Tajikistan_C_Sarazm WSHG -0.002705 -6.800407
- dscore: WSHG f4: 0.000569 Z: 1.617966
- details: Kazakhstan_Dali_EBA PPN 0.000242 0.678316
- details: Tajikistan_C_Sarazm PPN -0.000097 -0.293708
- dscore: PPN f4: 0.000027 Z: 0.094821
- details: Kazakhstan_Dali_EBA WEHG 0.002470 6.880679
- details: Tajikistan_C_Sarazm WEHG -0.001661 -4.751384
- dscore: WEHG f4: -0.000149 Z: -0.508519
- details: Kazakhstan_Dali_EBA Anatolia_N 0.000110 0.325899
- details: Tajikistan_C_Sarazm Anatolia_N -0.000017 -0.053712
- dscore: Anatolia_N f4: 0.000029 Z: 0.105955
- details: Kazakhstan_Dali_EBA Iran_GanjDareh_N -0.001064 -2.973274
- details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.001293 3.886493
- dscore: Iran_GanjDareh_N f4: 0.000430 Z: 1.506031
- details: Kazakhstan_Dali_EBA Russia_UstBelaya_Angara 0.004301 11.976831
- details: Tajikistan_C_Sarazm Russia_UstBelaya_Angara -0.001832 -5.357206
- dscore: Russia_UstBelaya_Angara f4: 0.000413 Z: 1.446902
- details: Kazakhstan_Dali_EBA ONG.SG 0.001622 4.558806
- details: Tajikistan_C_Sarazm ONG.SG -0.000824 -2.483581
- dscore: ONG.SG f4: 0.000071 Z: 0.255896
- details: Kazakhstan_Dali_EBA Botai 0.005730 13.135517
- details: Tajikistan_C_Sarazm Botai -0.003008 -7.666243
- dscore: Botai f4: 0.000190 Z: 0.560783
- gendstat: Cameroon_SMA.DG EEHG 0.060
- gendstat: Cameroon_SMA.DG WSHG 1.618
- gendstat: Cameroon_SMA.DG PPN 0.095
- gendstat: Cameroon_SMA.DG WEHG -0.509
- gendstat: Cameroon_SMA.DG Anatolia_N 0.106
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 1.506
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.447
- gendstat: Cameroon_SMA.DG ONG.SG 0.256
- gendstat: Cameroon_SMA.DG Botai 0.561
- gendstat: EEHG WSHG 1.921
- gendstat: EEHG PPN 0.025
- gendstat: EEHG WEHG -0.737
- gendstat: EEHG Anatolia_N 0.038
- gendstat: EEHG Iran_GanjDareh_N 1.372
- gendstat: EEHG Russia_UstBelaya_Angara 1.470
- gendstat: EEHG ONG.SG 0.168
- gendstat: EEHG Botai 0.630
- gendstat: WSHG PPN -1.529
- gendstat: WSHG WEHG -2.439
- gendstat: WSHG Anatolia_N -1.661
- gendstat: WSHG Iran_GanjDareh_N -0.400
- gendstat: WSHG Russia_UstBelaya_Angara -0.556
- gendstat: WSHG ONG.SG -1.475
- gendstat: WSHG Botai -1.348
- gendstat: PPN WEHG -0.740
- gendstat: PPN Anatolia_N 0.013
- gendstat: PPN Iran_GanjDareh_N 1.624
- gendstat: PPN Russia_UstBelaya_Angara 1.378
- gendstat: PPN ONG.SG 0.154
- gendstat: PPN Botai 0.476
- gendstat: WEHG Anatolia_N 1.004
- gendstat: WEHG Iran_GanjDareh_N 2.309
- gendstat: WEHG Russia_UstBelaya_Angara 2.275
- gendstat: WEHG ONG.SG 0.809
- gendstat: WEHG Botai 1.190
- gendstat: Anatolia_N Iran_GanjDareh_N 1.937
- gendstat: Anatolia_N Russia_UstBelaya_Angara 1.558
- gendstat: Anatolia_N ONG.SG 0.162
- gendstat: Anatolia_N Botai 0.513
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -0.065
- gendstat: Iran_GanjDareh_N ONG.SG -1.272
- gendstat: Iran_GanjDareh_N Botai -0.734
- gendstat: Russia_UstBelaya_Angara ONG.SG -1.421
- gendstat: Russia_UstBelaya_Angara Botai -0.830
- gendstat: ONG.SG Botai 0.380
- ##end of qpAdm: 381.462 seconds cpu 1202.201 Mbytes in use
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