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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1870147663
- read 1073741824 bytes
- read 2146675633 bytes
- packed geno read OK
- end of inpack
- left pops:
- Mongolia_EBA_2_Chemurchek
- Botai
- Geoksyur_EN
- Russia_Afanasievo
- Russia_BA_Okunevo.SG
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- CHG
- ONG.SG
- Boisman_MN
- 0 Mongolia_EBA_2_Chemurchek 2
- 1 Botai 2
- 2 Geoksyur_EN 21
- 3 Russia_Afanasievo 23
- 4 Russia_BA_Okunevo.SG 16
- 5 Cameroon_SMA.DG 1
- 6 EEHG 5
- 7 WSHG 3
- 8 PPN 11
- 9 WEHG 33
- 10 Anatolia_N 22
- 11 Iran_GanjDareh_N 8
- 12 CHG 2
- 13 ONG.SG 6
- 14 Boisman_MN 12
- jackknife block size: 0.050
- snps: 1150510 indivs: 167
- number of blocks for block jackknife: 713
- ## ncols: 1150510
- coverage: Mongolia_EBA_2_Chemurchek 925265
- coverage: Botai 926654
- coverage: Geoksyur_EN 1020133
- coverage: Russia_Afanasievo 1122728
- coverage: Russia_BA_Okunevo.SG 1149974
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: CHG 1149558
- coverage: ONG.SG 1143397
- coverage: Boisman_MN 1031750
- dof (jackknife): 621.009
- numsnps used: 1150510
- codimension 1
- f4info:
- f4rank: 3 dof: 6 chisq: 7.518 tail: 0.275574135 dofdiff: 8 chisqdiff: -7.518 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- EEHG 1.374 1.147 0.290
- WSHG 1.832 0.528 -1.462
- PPN -0.461 0.907 0.145
- WEHG 0.536 1.463 1.569
- Anatolia_N -0.378 1.070 0.615
- Iran_GanjDareh_N -0.926 0.570 -1.675
- CHG -0.540 0.859 0.495
- ONG.SG 0.650 -0.567 0.657
- Boisman_MN 1.241 -1.383 0.658
- A:
- scale 401.040 758.282 1837.093
- Botai 1.082 0.303 -1.286
- Geoksyur_EN -1.594 -0.460 -0.693
- Russia_Afanasievo -0.489 0.991 1.075
- Russia_BA_Okunevo.SG 0.228 -1.647 0.842
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 7.518 taildiff: 0.275574135
- B:
- scale 356.406 250.009 511.870 437.849
- EEHG 1.364 -1.605 -0.051 -0.753
- WSHG 2.333 -1.705 -1.062 -0.225
- PPN -0.372 0.287 0.928 -0.990
- WEHG 0.428 -0.846 1.252 -0.850
- Anatolia_N -0.307 0.186 1.220 -0.951
- Iran_GanjDareh_N -0.310 1.028 0.561 -1.044
- CHG -0.413 0.417 1.198 -0.753
- ONG.SG 0.473 -0.577 -0.463 0.910
- Boisman_MN 0.889 -1.060 -1.410 1.814
- A:
- scale 2.000 2.000 2.000 2.000
- Botai 2.000 0.000 0.000 0.000
- Geoksyur_EN 0.000 2.000 0.000 0.000
- Russia_Afanasievo 0.000 0.000 2.000 0.000
- Russia_BA_Okunevo.SG 0.000 0.000 0.000 2.000
- best coefficients: 0.322 0.151 0.319 0.209
- Jackknife mean: 0.321804409 0.150388659 0.318879636 0.208927296
- std. errors: 0.037 0.026 0.037 0.035
- error covariance (* 1,000,000)
- 1368 488 -789 -1067
- 488 673 -793 -368
- -789 -793 1382 200
- -1067 -368 200 1236
- summ: Mongolia_EBA_2_Chemurchek 4 0.275574 0.322 0.150 0.319 0.209 1368 488 -789 -1067 673 ...
- -793 -368 1382 200 1236
- fixed pat wt dof chisq tail prob
- 0000 0 6 7.518 0.275574 0.322 0.151 0.319 0.209
- 0001 1 7 40.044 1.23435e-06 0.507 0.215 0.279 0.000
- 0010 1 7 70.024 1.46132e-12 0.518 0.334 0.000 0.147
- 0100 1 7 41.420 6.72267e-07 0.223 0.000 0.490 0.287
- 1000 1 7 81.899 5.64288e-15 0.000 0.041 0.492 0.467
- 0011 2 8 84.706 5.49564e-15 0.636 0.364 0.000 0.000
- 0101 2 8 115.266 3.14061e-21 0.449 0.000 0.551 0.000
- 0110 2 8 472.972 0 0.376 0.000 0.000 0.624
- 1001 2 8 569.640 0 0.000 -0.004 1.004 0.000 infeasible
- 1010 2 8 288.020 0 0.000 0.295 0.000 0.705
- 1100 2 8 84.379 6.3972e-15 0.000 0.000 0.534 0.466
- 0111 3 9 592.963 0 1.000 0.000 0.000 0.000
- 1011 3 9 1717.890 0 0.000 1.000 0.000 0.000
- 1101 3 9 568.169 0 0.000 0.000 1.000 0.000
- 1110 3 9 541.282 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.275574 - -
- best pat: 0001 1.23435e-06 chi(nested): 32.526 p-value for nested model: 1.17586e-08
- best pat: 1100 6.3972e-15 not nested
- best pat: 1110 8.23272e-111 chi(nested): 456.902 p-value for nested model: 2.27464e-101
- coeffs: 0.322 0.151 0.319 0.209
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Botai EEHG 0.003826 10.854719
- details: Geoksyur_EN EEHG -0.006418 -19.606903
- details: Russia_Afanasievo EEHG -0.000099 -0.344557
- details: Russia_BA_Okunevo.SG EEHG -0.001719 -5.206215
- dscore: EEHG f4: -0.000126 Z: -0.457137
- details: Botai WSHG 0.006547 16.204111
- details: Geoksyur_EN WSHG -0.006819 -19.196158
- details: Russia_Afanasievo WSHG -0.002075 -6.147841
- details: Russia_BA_Okunevo.SG WSHG -0.000514 -1.423997
- dscore: WSHG f4: 0.000312 Z: 0.974018
- details: Botai PPN -0.001044 -3.200914
- details: Geoksyur_EN PPN 0.001147 3.940085
- details: Russia_Afanasievo PPN 0.001812 6.823663
- details: Russia_BA_Okunevo.SG PPN -0.002261 -7.773910
- dscore: PPN f4: -0.000059 Z: -0.229866
- details: Botai WEHG 0.001201 3.753387
- details: Geoksyur_EN WEHG -0.003385 -11.665688
- details: Russia_Afanasievo WEHG 0.002447 9.245618
- details: Russia_BA_Okunevo.SG WEHG -0.001942 -6.687615
- dscore: WEHG f4: 0.000250 Z: 1.003686
- details: Botai Anatolia_N -0.000860 -2.863518
- details: Geoksyur_EN Anatolia_N 0.000745 2.802197
- details: Russia_Afanasievo Anatolia_N 0.002384 9.948749
- details: Russia_BA_Okunevo.SG Anatolia_N -0.002171 -8.078951
- dscore: Anatolia_N f4: 0.000141 Z: 0.605232
- details: Botai Iran_GanjDareh_N -0.000870 -2.787570
- details: Geoksyur_EN Iran_GanjDareh_N 0.004111 14.527022
- details: Russia_Afanasievo Iran_GanjDareh_N 0.001097 4.205604
- details: Russia_BA_Okunevo.SG Iran_GanjDareh_N -0.002383 -8.654892
- dscore: Iran_GanjDareh_N f4: 0.000191 Z: 0.779217
- details: Botai CHG -0.001160 -3.255695
- details: Geoksyur_EN CHG 0.001668 5.206240
- details: Russia_Afanasievo CHG 0.002340 8.129922
- details: Russia_BA_Okunevo.SG CHG -0.001720 -5.380710
- dscore: CHG f4: 0.000264 Z: 0.943332
- details: Botai ONG.SG 0.001326 4.194642
- details: Geoksyur_EN ONG.SG -0.002307 -7.936919
- details: Russia_Afanasievo ONG.SG -0.000905 -3.447355
- details: Russia_BA_Okunevo.SG ONG.SG 0.002078 7.650154
- dscore: ONG.SG f4: 0.000226 Z: 0.932402
- details: Botai Boisman_MN 0.002494 7.333330
- details: Geoksyur_EN Boisman_MN -0.004238 -13.468140
- details: Russia_Afanasievo Boisman_MN -0.002754 -9.672499
- details: Russia_BA_Okunevo.SG Boisman_MN 0.004144 12.999270
- dscore: Boisman_MN f4: 0.000153 Z: 0.561584
- gendstat: Cameroon_SMA.DG EEHG -0.457
- gendstat: Cameroon_SMA.DG WSHG 0.974
- gendstat: Cameroon_SMA.DG PPN -0.230
- gendstat: Cameroon_SMA.DG WEHG 1.004
- gendstat: Cameroon_SMA.DG Anatolia_N 0.605
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.779
- gendstat: Cameroon_SMA.DG CHG 0.943
- gendstat: Cameroon_SMA.DG ONG.SG 0.932
- gendstat: Cameroon_SMA.DG Boisman_MN 0.562
- gendstat: EEHG WSHG 1.706
- gendstat: EEHG PPN 0.240
- gendstat: EEHG WEHG 1.728
- gendstat: EEHG Anatolia_N 1.106
- gendstat: EEHG Iran_GanjDareh_N 1.280
- gendstat: EEHG CHG 1.327
- gendstat: EEHG ONG.SG 1.263
- gendstat: EEHG Boisman_MN 0.959
- gendstat: WSHG PPN -1.194
- gendstat: WSHG WEHG -0.224
- gendstat: WSHG Anatolia_N -0.608
- gendstat: WSHG Iran_GanjDareh_N -0.412
- gendstat: WSHG CHG -0.148
- gendstat: WSHG ONG.SG -0.283
- gendstat: WSHG Boisman_MN -0.516
- gendstat: PPN WEHG 1.383
- gendstat: PPN Anatolia_N 1.182
- gendstat: PPN Iran_GanjDareh_N 1.035
- gendstat: PPN CHG 1.205
- gendstat: PPN ONG.SG 1.020
- gendstat: PPN Boisman_MN 0.735
- gendstat: WEHG Anatolia_N -0.640
- gendstat: WEHG Iran_GanjDareh_N -0.265
- gendstat: WEHG CHG 0.052
- gendstat: WEHG ONG.SG -0.100
- gendstat: WEHG Boisman_MN -0.358
- gendstat: Anatolia_N Iran_GanjDareh_N 0.258
- gendstat: Anatolia_N CHG 0.556
- gendstat: Anatolia_N ONG.SG 0.351
- gendstat: Anatolia_N Boisman_MN 0.046
- gendstat: Iran_GanjDareh_N CHG 0.311
- gendstat: Iran_GanjDareh_N ONG.SG 0.144
- gendstat: Iran_GanjDareh_N Boisman_MN -0.143
- gendstat: CHG ONG.SG -0.133
- gendstat: CHG Boisman_MN -0.365
- gendstat: ONG.SG Boisman_MN -0.314
- ##end of qpAdm: 401.959 seconds cpu 1294.651 Mbytes in use
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