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  1. structure(list(type = c("WT", "WT", "WT", "WT", "WT", "SHC",
  2. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  3. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  4. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  5. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  6. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  7. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  8. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  9. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  10. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  11. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  12. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  13. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  14. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  15. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  16. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  17. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  18. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  19. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  20. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  21. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  22. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  23. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  24. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  25. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  26. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  27. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  28. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  29. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  30. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  31. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  32. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  33. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  34. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  35. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  36. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  37. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  38. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  39. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  40. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  41. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  42. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  43. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  44. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  45. "SHC", "SHC", "SHC", "SHC", "WT", "WT", "WT", "WT", "WT", "SHC",
  46. "SHC", "SHC", "SHC", "SHC"), lipids = structure(c(3L, 5L, 4L,
  47. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  48. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  49. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L,
  50. 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L,
  51. 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L,
  52. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  53. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  54. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L,
  55. 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L,
  56. 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L,
  57. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  58. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  59. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L,
  60. 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L,
  61. 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L,
  62. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  63. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  64. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L,
  65. 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L,
  66. 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L,
  67. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  68. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  69. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L,
  70. 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L,
  71. 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L,
  72. 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L,
  73. 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L,
  74. 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L, 3L, 5L, 4L, 6L, 7L), .Label = c("DIP",
  75. "mDIP", "CL [66:0]", "CL [70:2]", "CL [70:4]", "CL [72:4]", "CL [74:2]",
  76. "PC [32:1]", "PC [32:2]", "PC [34:1]", "PC [34:2]", "PC [34:3]",
  77. "PC [34:4]", "PC [36:2]", "PC [36:3]", "PC [36:4]", "PE [32:1]",
  78. "PE [34:1]", "PE [34:2]", "PE [36:1]", "PE [36:2]", "PE [36:3]",
  79. "PG [32:1]", "PG [34:1]", "PG [34:2]", "PG [36:2]", "PG [36:3]"
  80. ), class = "factor"), rep = c("early1", "early1", "early1", "early1",
  81. "early1", "early1", "early1", "early1", "early1", "early1", "early2",
  82. "early2", "early2", "early2", "early2", "early2", "early2", "early2",
  83. "early2", "early2", "early3", "early3", "early3", "early3", "early3",
  84. "early3", "early3", "early3", "early3", "early3", "mid1", "mid1",
  85. "mid1", "mid1", "mid1", "mid1", "mid1", "mid1", "mid1", "mid1",
  86. "mid2", "mid2", "mid2", "mid2", "mid2", "mid2", "mid2", "mid2",
  87. "mid2", "mid2", "mid3", "mid3", "mid3", "mid3", "mid3", "mid3",
  88. "mid3", "mid3", "mid3", "mid3", "late1", "late1", "late1", "late1",
  89. "late1", "late1", "late1", "late1", "late1", "late1", "late2",
  90. "late2", "late2", "late2", "late2", "late2", "late2", "late2",
  91. "late2", "late2", "late3", "late3", "late3", "late3", "late3",
  92. "late3", "late3", "late3", "late3", "late3", "stat1", "stat1",
  93. "stat1", "stat1", "stat1", "stat1", "stat1", "stat1", "stat1",
  94. "stat1", "stat2", "stat2", "stat2", "stat2", "stat2", "stat2",
  95. "stat2", "stat2", "stat2", "stat2", "stat3", "stat3", "stat3",
  96. "stat3", "stat3", "stat3", "stat3", "stat3", "stat3", "stat3",
  97. "pH 5.5 1", "pH 5.5 1", "pH 5.5 1", "pH 5.5 1", "pH 5.5 1", "pH 5.5 1",
  98. "pH 5.5 1", "pH 5.5 1", "pH 5.5 1", "pH 5.5 1", "pH 5.5 2", "pH 5.5 2",
  99. "pH 5.5 2", "pH 5.5 2", "pH 5.5 2", "pH 5.5 2", "pH 5.5 2", "pH 5.5 2",
  100. "pH 5.5 2", "pH 5.5 2", "pH 5.5 3", "pH 5.5 3", "pH 5.5 3", "pH 5.5 3",
  101. "pH 5.5 3", "pH 5.5 3", "pH 5.5 3", "pH 5.5 3", "pH 5.5 3", "pH 5.5 3",
  102. "pH 6 1", "pH 6 1", "pH 6 1", "pH 6 1", "pH 6 1", "pH 6 1", "pH 6 1",
  103. "pH 6 1", "pH 6 1", "pH 6 1", "pH 6 2", "pH 6 2", "pH 6 2", "pH 6 2",
  104. "pH 6 2", "pH 6 2", "pH 6 2", "pH 6 2", "pH 6 2", "pH 6 2", "pH 6 3",
  105. "pH 6 3", "pH 6 3", "pH 6 3", "pH 6 3", "pH 6 3", "pH 6 3", "pH 6 3",
  106. "pH 6 3", "pH 6 3", "pH 7 1", "pH 7 1", "pH 7 1", "pH 7 1", "pH 7 1",
  107. "pH 7 1", "pH 7 1", "pH 7 1", "pH 7 1", "pH 7 1", "pH 7 2", "pH 7 2",
  108. "pH 7 2", "pH 7 2", "pH 7 2", "pH 7 2", "pH 7 2", "pH 7 2", "pH 7 2",
  109. "pH 7 2", "pH 7 3", "pH 7 3", "pH 7 3", "pH 7 3", "pH 7 3", "pH 7 3",
  110. "pH 7 3", "pH 7 3", "pH 7 3", "pH 7 3", "pH 7.5 1", "pH 7.5 1",
  111. "pH 7.5 1", "pH 7.5 1", "pH 7.5 1", "pH 7.5 1", "pH 7.5 1", "pH 7.5 1",
  112. "pH 7.5 1", "pH 7.5 1", "pH 7.5 2", "pH 7.5 2", "pH 7.5 2", "pH 7.5 2",
  113. "pH 7.5 2", "pH 7.5 2", "pH 7.5 2", "pH 7.5 2", "pH 7.5 2", "pH 7.5 2",
  114. "pH 7.5 3", "pH 7.5 3", "pH 7.5 3", "pH 7.5 3", "pH 7.5 3", "pH 7.5 3",
  115. "pH 7.5 3", "pH 7.5 3", "pH 7.5 3", "pH 7.5 3", "13C 1", "13C 1",
  116. "13C 1", "13C 1", "13C 1", "13C 1", "13C 1", "13C 1", "13C 1",
  117. "13C 1", "13C 2", "13C 2", "13C 2", "13C 2", "13C 2", "13C 2",
  118. "13C 2", "13C 2", "13C 2", "13C 2", "13C 3", "13C 3", "13C 3",
  119. "13C 3", "13C 3", "13C 3", "13C 3", "13C 3", "13C 3", "13C 3",
  120. "20C 1", "20C 1", "20C 1", "20C 1", "20C 1", "20C 1", "20C 1",
  121. "20C 1", "20C 1", "20C 1", "20C 2", "20C 2", "20C 2", "20C 2",
  122. "20C 2", "20C 2", "20C 2", "20C 2", "20C 2", "20C 2", "20C 3",
  123. "20C 3", "20C 3", "20C 3", "20C 3", "20C 3", "20C 3", "20C 3",
  124. "20C 3", "20C 3", "30C 1", "30C 1", "30C 1", "30C 1", "30C 1",
  125. "30C 1", "30C 1", "30C 1", "30C 1", "30C 1", "30C 2", "30C 2",
  126. "30C 2", "30C 2", "30C 2", "30C 2", "30C 2", "30C 2", "30C 2",
  127. "30C 2", "30C 3", "30C 3", "30C 3", "30C 3", "30C 3", "30C 3",
  128. "30C 3", "30C 3", "30C 3", "30C 3", "NaCl 0.05 1", "NaCl 0.05 1",
  129. "NaCl 0.05 1", "NaCl 0.05 1", "NaCl 0.05 1", "NaCl 0.05 1", "NaCl 0.05 1",
  130. "NaCl 0.05 1", "NaCl 0.05 1", "NaCl 0.05 1", "NaCl 0.05 2", "NaCl 0.05 2",
  131. "NaCl 0.05 2", "NaCl 0.05 2", "NaCl 0.05 2", "NaCl 0.05 2", "NaCl 0.05 2",
  132. "NaCl 0.05 2", "NaCl 0.05 2", "NaCl 0.05 2", "NaCl 0.05 3", "NaCl 0.05 3",
  133. "NaCl 0.05 3", "NaCl 0.05 3", "NaCl 0.05 3", "NaCl 0.05 3", "NaCl 0.05 3",
  134. "NaCl 0.05 3", "NaCl 0.05 3", "NaCl 0.05 3", "NaCl 0.1 1", "NaCl 0.1 1",
  135. "NaCl 0.1 1", "NaCl 0.1 1", "NaCl 0.1 1", "NaCl 0.1 1", "NaCl 0.1 1",
  136. "NaCl 0.1 1", "NaCl 0.1 1", "NaCl 0.1 1", "NaCl 0.1 2", "NaCl 0.1 2",
  137. "NaCl 0.1 2", "NaCl 0.1 2", "NaCl 0.1 2", "NaCl 0.1 2", "NaCl 0.1 2",
  138. "NaCl 0.1 2", "NaCl 0.1 2", "NaCl 0.1 2", "NaCl 0.1 3", "NaCl 0.1 3",
  139. "NaCl 0.1 3", "NaCl 0.1 3", "NaCl 0.1 3", "NaCl 0.1 3", "NaCl 0.1 3",
  140. "NaCl 0.1 3", "NaCl 0.1 3", "NaCl 0.1 3", "MetOH 0.1 1", "MetOH 0.1 1",
  141. "MetOH 0.1 1", "MetOH 0.1 1", "MetOH 0.1 1", "MetOH 0.1 1", "MetOH 0.1 1",
  142. "MetOH 0.1 1", "MetOH 0.1 1", "MetOH 0.1 1", "MetOH 0.1 2", "MetOH 0.1 2",
  143. "MetOH 0.1 2", "MetOH 0.1 2", "MetOH 0.1 2", "MetOH 0.1 2", "MetOH 0.1 2",
  144. "MetOH 0.1 2", "MetOH 0.1 2", "MetOH 0.1 2", "MetOH 0.1 3", "MetOH 0.1 3",
  145. "MetOH 0.1 3", "MetOH 0.1 3", "MetOH 0.1 3", "MetOH 0.1 3", "MetOH 0.1 3",
  146. "MetOH 0.1 3", "MetOH 0.1 3", "MetOH 0.1 3", "MetOH 1 1", "MetOH 1 1",
  147. "MetOH 1 1", "MetOH 1 1", "MetOH 1 1", "MetOH 1 1", "MetOH 1 1",
  148. "MetOH 1 1", "MetOH 1 1", "MetOH 1 1", "MetOH 1 2", "MetOH 1 2",
  149. "MetOH 1 2", "MetOH 1 2", "MetOH 1 2", "MetOH 1 2", "MetOH 1 2",
  150. "MetOH 1 2", "MetOH 1 2", "MetOH 1 2", "MetOH 1 3", "MetOH 1 3",
  151. "MetOH 1 3", "MetOH 1 3", "MetOH 1 3", "MetOH 1 3", "MetOH 1 3",
  152. "MetOH 1 3", "MetOH 1 3", "MetOH 1 3"), num = c(0.009523686,
  153. 0.043189398, 0.420979104, 0.246671197, 3.451885409, 0.015840778,
  154. 0.066796591, 0.711819877, 0.266602215, 3.454463141, 0.007613802,
  155. 0.046278008, 0.392051405, 0.25502036, 3.159879284, 0.023401093,
  156. 0.083028102, 0.496309773, 0.312034391, 2.537644531, 0.011478203,
  157. 0.054305349, 0.464326108, 0.307066853, 3.6602462, 0.022539611,
  158. 0.088932716, 0.561775816, 0.306176596, 2.67694279, 0.010537286,
  159. 0.04003825, 0.433807129, 0.265128974, 3.793074386, 0.033332936,
  160. 0.125527261, 0.665685118, 0.433383167, 3.079080661, 0.007334728,
  161. 0.050505078, 0.380642914, 0.297303594, 3.223705784, 0.028779332,
  162. 0.133574985, 0.627769179, 0.44754806, 2.958721891, 0.006611086,
  163. 0.030062788, 0.368471191, 0.196684816, 3.41357708, 0.029912455,
  164. 0.123199878, 0.725256378, 0.429472199, 3.320616551, 0.01118598,
  165. 0.079753642, 0.42517786, 0.475724091, 3.136961558, 0.02541216,
  166. 0.092255666, 0.700284371, 0.310205814, 3.021941072, 0.011543492,
  167. 0.074750731, 0.436643281, 0.41869653, 3.16178206, 0.016723165,
  168. 0.107711653, 0.478617926, 0.327257309, 2.187418617, 0.014526945,
  169. 0.083030295, 0.421018391, 0.453286503, 3.034308389, 0.013312235,
  170. 0.094337923, 0.604186915, 0.319925114, 2.710050374, 0.018963327,
  171. 0.134905674, 0.324578481, 0.675510653, 2.075633975, 0.048011844,
  172. 0.173339125, 0.671572835, 0.410361322, 1.686563816, 0.020817582,
  173. 0.138788879, 0.322903267, 0.686792019, 2.160872891, 0.045915999,
  174. 0.186073834, 0.623858447, 0.427157351, 1.630243088, 0.02334196,
  175. 0.141525911, 0.326552113, 0.705404966, 2.160032852, 0.056147482,
  176. 0.177409855, 0.776909273, 0.40933411, 1.976242185, 0.004633127,
  177. 0.148588149, 0.486888237, 0.692898358, 2.642813555, 0.04514786,
  178. 0.293542177, 0.628124318, 0.92269088, 2.427045621, 0.009330446,
  179. 0.157310452, 0.389913986, 0.69311545, 2.373673687, 0.032803203,
  180. 0.293311922, 0.512466096, 0.94176273, 1.966838355, 0.016920389,
  181. 0.153930147, 0.407931604, 0.66933255, 2.43192777, 0.045960156,
  182. 0.270842741, 0.599652483, 0.820429999, 2.189575381, 0.017778907,
  183. 0.118991857, 0.472321709, 0.613337385, 3.115415618, 0.028992327,
  184. 0.229761789, 0.492154055, 0.842800722, 2.242849613, 0.023182626,
  185. 0.119038523, 0.582892594, 0.597699301, 3.779952255, 0.03861396,
  186. 0.233904848, 0.569834529, 0.811853695, 2.573955654, 0.023031255,
  187. 0.119210287, 0.572679168, 0.611935847, 3.685191127, 0.04358965,
  188. 0.334758071, 0.736448747, 1.231148933, 3.280921801, 0.007902522,
  189. 0.098307685, 0.616613495, 0.437905544, 4.150185864, 0.01725995,
  190. 0.154284081, 0.709570519, 0.426857487, 2.970822428, 0.005021786,
  191. 0.092351365, 0.331772789, 0.476369777, 2.082020853, 0.018188753,
  192. 0.136003722, 0.569063573, 0.454751015, 2.296572566, 0.006793196,
  193. 0.090945613, 0.410991263, 0.449364368, 2.536806135, 0.032270599,
  194. 0.150618359, 0.759625702, 0.447729593, 3.01282956, 0.007153489,
  195. 0.10780106, 0.574597942, 0.476387687, 2.915254622, 0.06383629,
  196. 0.264258274, 0.548375265, 0.711833684, 2.155158445, 0.017068877,
  197. 0.118768278, 0.599951373, 0.477224531, 3.186731876, 0.026518865,
  198. 0.26922641, 0.682501252, 0.753471226, 2.681314829, 0.014697648,
  199. 0.11854954, 0.537912378, 0.532150804, 2.962629872, 0.02748779,
  200. 0.262262926, 0.701643907, 0.730112753, 2.943014213, 0.001144995,
  201. 0.108661125, 0.41072655, 0.401729495, 3.349649409, 0.004814308,
  202. 0.138971717, 0.351954191, 0.397538279, 1.810974482, 0.000854878,
  203. 0.076091557, 0.317566463, 0.265579988, 2.697381593, 0.006671769,
  204. 0.143615213, 0.375693318, 0.432116471, 1.964832118, 0.001387258,
  205. 0.089433716, 0.347318908, 0.310210558, 2.831744905, 0.011747384,
  206. 0.161909067, 0.483097774, 0.434049624, 2.495174754, 0.002421467,
  207. 0.052017808, 0.32257307, 0.321733033, 2.913409569, 0.006364221,
  208. 0.108896499, 0.400344628, 0.45083928, 2.612358054, 0.002088531,
  209. 0.062392598, 0.345417305, 0.376732525, 3.148227718, 0.007314019,
  210. 0.115997721, 0.382326299, 0.456267995, 2.548147974, 0.002197505,
  211. 0.056822917, 0.329202368, 0.327668171, 3.060426171, 0.004130378,
  212. 0.095727468, 0.256862326, 0.449779773, 1.707117768, 0.009523686,
  213. 0.043189398, 0.420979104, 0.246671197, 3.451885409, 0.015840778,
  214. 0.066796591, 0.711819877, 0.266602215, 3.454463141, 0.007613802,
  215. 0.046278008, 0.392051405, 0.25502036, 3.159879284, 0.023401093,
  216. 0.083028102, 0.496309773, 0.312034391, 2.537644531, 0.011478203,
  217. 0.054305349, 0.464326108, 0.307066853, 3.6602462, 0.022539611,
  218. 0.088932716, 0.561775816, 0.306176596, 2.67694279, 0.013238195,
  219. 0.116731516, 0.513870128, 0.714466207, 4.13215759, 0.017830501,
  220. 0.256775249, 0.566607585, 0.768765952, 2.099092988, 0.005996389,
  221. 0.131612407, 0.391253262, 0.807713856, 3.192910963, 0.010803128,
  222. 0.267512693, 0.49323859, 0.809247089, 1.75861532, 0.007420278,
  223. 0.130344538, 0.370661217, 0.821807125, 3.157958777, 0.027113392,
  224. 0.260864254, 0.697775301, 0.828808324, 2.503637112, 0.008109203,
  225. 0.126053618, 0.424421426, 0.736527329, 3.138838862, 0.030241241,
  226. 0.401973349, 0.749110588, 0.982360012, 1.95767926, 0.008821784,
  227. 0.120380007, 0.445323375, 0.698091901, 3.2819844, 0.035769782,
  228. 0.383012382, 0.745898962, 0.940316819, 2.021141233, 0.009709852,
  229. 0.119421859, 0.460181194, 0.662124848, 3.418103048, 0.035575143,
  230. 0.408529835, 0.817553592, 0.979699253, 2.191139604, 0.014092665,
  231. 0.088921329, 0.400118909, 0.533636754, 3.211855928, 0.023826824,
  232. 0.21030273, 0.450340544, 0.813043891, 2.450184786, 0.002871928,
  233. 0.093172622, 0.313849684, 0.56060567, 2.618043655, 0.022990767,
  234. 0.190713274, 0.542822273, 0.771433207, 2.977290039, 0.018301729,
  235. 0.086026637, 0.440453336, 0.560300392, 3.600196218, 0.026158589,
  236. 0.176415047, 0.514817064, 0.713635504, 2.745529632, 0.019531106,
  237. 0.093643383, 0.419362398, 0.54614676, 3.085470045, 0.028815782,
  238. 0.187065712, 0.520767972, 0.645079007, 2.374529212, 0.021278598,
  239. 0.099665663, 0.412005508, 0.60694041, 3.16902752, 0.041771475,
  240. 0.171868691, 0.517726713, 0.580779114, 2.261748875, 0.01654279,
  241. 0.104298166, 0.362437548, 0.602720163, 2.799936307, 0.033620427,
  242. 0.203394035, 0.589582994, 0.690476977, 2.759532167), groups = c("Growth stage",
  243. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  244. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  245. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  246. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  247. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  248. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  249. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  250. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  251. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  252. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  253. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  254. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  255. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  256. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  257. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  258. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  259. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  260. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  261. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  262. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  263. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  264. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  265. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  266. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  267. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  268. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  269. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  270. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  271. "Growth stage", "Growth stage", "Growth stage", "Growth stage",
  272. "Growth stage", "Growth stage", "Growth stage", "Ph", "Ph", "Ph",
  273. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  274. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  275. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  276. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  277. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  278. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  279. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  280. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  281. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  282. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph",
  283. "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Ph", "Temperature", "Temperature",
  284. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  285. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  286. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  287. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  288. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  289. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  290. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  291. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  292. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  293. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  294. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  295. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  296. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  297. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  298. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  299. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  300. "Temperature", "Temperature", "Temperature", "Temperature", "Temperature",
  301. "Temperature", "Temperature", "Temperature", "NaCl", "NaCl",
  302. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  303. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  304. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  305. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  306. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  307. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  308. "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl", "NaCl",
  309. "NaCl", "NaCl", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  310. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  311. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  312. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  313. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  314. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  315. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  316. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH",
  317. "MetOH", "MetOH", "MetOH", "MetOH", "MetOH", "MetOH")), row.names = c(NA,
  318. -450L), class = c("tbl_df", "tbl", "data.frame"), .Names = c("type",
  319. "lipids", "rep", "num", "groups"))
  320.  
  321. ph7 <- test_cl
  322. ph7$rep<-sub("X","",ph7$rep)
  323. ph7$rep<-sub("\d$","",ph7$rep)
  324. ph7$rep<-sub("\.$","",ph7$rep)
  325. ph7 <- ph7 %>% group_by(type, lipids, groups, rep)%>% summarise_all( funs(mean(.)))
  326.  
  327. ggplot(test_cl, aes(x = factor(lipids), y= num, col = type)) +
  328. geom_point(size = 0.4, position = position_dodge(width = 0.3))+
  329. geom_hline(data = filter(ph7, grepl('pH 7 ', rep)),aes(yintercept = num ,col = type)) +
  330. scale_fill_discrete(name = '') +
  331. scale_color_discrete(name = 'standard') +
  332. coord_flip() +
  333. theme_bw() +
  334. theme( panel.grid.major = element_blank(),
  335. panel.grid.minor = element_blank(),
  336. axis.text.x=element_text(angle=0,hjust=1),
  337. text = element_text(size=5)
  338. ) +
  339. scale_colour_manual(values=c("WT" = "grey50", "SHC" = "tomato") ) +
  340. scale_x_discrete(expand=c(0, 0.9))
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