FROM ubuntu:18.04

# basic setup
SHELL ["/bin/bash", "-c"]

# update
RUN apt-get -y update && \
    apt-get install -y --no-install-recommends software-properties-common && \
    add-apt-repository ppa:gophers/archive && \
    apt-get -y update && \
    apt-get install -y --no-install-recommends apt-utils curl \
    bzip2 gcc git wget g++ build-essential libc6-dev make pkg-config \
    golang-1.10-go libzmq3-dev \
    libsm6 libxext6 libxrender-dev locales

RUN sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen && \
    dpkg-reconfigure --frontend=noninteractive locales && \
    update-locale LANG=en_US.UTF-8

RUN sed -i -e 's/# ru_RU.UTF-8 UTF-8/ru_RU.UTF-8 UTF-8/' /etc/locale.gen && \
    dpkg-reconfigure --frontend=noninteractive locales && \
    locale-gen ru_RU.UTF-8 && \
    update-locale LANG=ru_RU.UTF-8
ENV LANGUAGE ru_RU:ru
ENV LANG ru_RU.UTF-8
ENV LC_ALL ru_RU.UTF-8

# Golang
ENV GOPATH /go
ENV PATH $GOPATH/bin:/usr/lib/go-1.10/bin:$PATH

# miniconda + scientific python stack
RUN curl -O https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
RUN bash Miniconda3-latest-Linux-x86_64.sh -b -p /root/miniconda

# activate
ENV PATH /root/miniconda/bin:$PATH

RUN conda update -n base conda && pip install --upgrade pip
RUN conda install python=3.6

RUN conda install -y pip numpy scipy jupyter matplotlib tqdm pandas seaborn tqdm psutil
RUN conda install -y pytorch-cpu torchvision-cpu -c pytorch

# zeromq
# RUN go get github.com/pebbe/zmq4
# python packages
RUN pip install pyzmq pywavelets schema pyro-ppl schema timeout_decorator jupyter_contrib_nbextensions

# influxdb
RUN wget https://dl.influxdata.com/influxdb/releases/influxdb_1.6.2_amd64.deb && dpkg -i influxdb_1.6.2_amd64.deb && pip install influxdb

# R
RUN conda install -c conda-forge rpy2 r-dtw r-irkernel r-gss r-ggplot2 r-extrafont

RUN Rscript -e "IRkernel::installspec()"
WORKDIR /root

RUN jupyter notebook --generate-config

USER root
EXPOSE 8888

# Configure container startup

# tensorflow Cython
RUN conda install -y Cython

# RUN pip install --upgrade https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-1.12.0-py3-none-any.whl

RUN pip install tensorflow keras

# skbayes
# RUN git clone https://github.com/AmazaspShumik/sklearn-bayes.git && find sklearn-bayes -name '*.pyx' -exec cython {} \; && pip install sklearn-bayes/ && rm -rf sklearn-bayes/
# RUN pip install sklearn-bayes
RUN pip install https://github.com/AmazaspShumik/sklearn_bayes/archive/master.zip

# GPy
# RUN git clone https://github.com/SheffieldML/GPy.git && find GPy -name '*.pyx' -exec cython {} \; && pip install GPy/ && rm -rf GPy/
RUN pip install GPy

RUN pip install numpy torchvision_nightly

RUN pip install gpytorch==0.1.0rc5

RUN Rscript -e "IRkernel::installspec()"
WORKDIR /root/workdir
ENTRYPOINT ["jupyter", "notebook", "--ip=0.0.0.0", "--port=8888", "--allow-root", "--NotebookApp.token=''"]