robbinespu

sudo -E pdebuild

Feb 22nd, 2021
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  1. > Mon 22 Feb 2021 11:14:53 PM +08  (master)
  2. robbi@debian: pts/0: /home/robbi/workspace/debian_stuff/new/scanpy
  3. └─ $ sudo -E pdebuild
  4. dpkg-checkbuilddeps: error: Unmet build dependencies: debhelper-compat (= 13) python3-importlib-metadata umap-learn python3-zarr
  5. W: Unmet build-dependency in source
  6. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  7. dpkg-source: info: using patch list from debian/patches/series
  8. dpkg-source: info: applying avoid_setuptools_scm.patch
  9. dh clean --with python3 --buildsystem=pybuild
  10.    dh_auto_clean -O--buildsystem=pybuild
  11.         pybuild --clean -i python{version} -p 3.7
  12. I: pybuild base:217: python3.7 setup.py clean
  13. running clean
  14. removing '/home/robbi/workspace/debian_stuff/new/scanpy/.pybuild/cpython3_3.7_scanpy/build' (and everything under it)
  15. /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  16.   warnings.warn(msg)
  17. 'build/bdist.linux-amd64' does not exist -- can't clean it
  18. 'build/scripts-3.7' does not exist -- can't clean it
  19.         rm -rf .pybuild/
  20.         find . -name \*.pyc -exec rm {} \;
  21.    dh_autoreconf_clean -O--buildsystem=pybuild
  22.    dh_clean -O--buildsystem=pybuild
  23.         rm -f debian/debhelper-build-stamp
  24.         rm -rf debian/.debhelper/
  25.         rm -f -- debian/python3-scanpy.substvars debian/files
  26.         rm -fr -- debian/python3-scanpy/ debian/tmp/
  27.         find .  \( \( \
  28.                 \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
  29.                 \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
  30.                  -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
  31.                  -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
  32.                  -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
  33.                 \) -exec rm -f {} + \) -o \
  34.                 \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
  35. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  36. dpkg-source: info: using source format '3.0 (quilt)'
  37. dpkg-source: info: building scanpy using existing ./scanpy_1.6.0.orig.tar.gz
  38. dpkg-source: info: using patch list from debian/patches/series
  39. dpkg-source: info: building scanpy in scanpy_1.6.0-1.debian.tar.xz
  40. dpkg-source: info: building scanpy in scanpy_1.6.0-1.dsc
  41. I: Generating source changes file for original dsc
  42. dpkg-genchanges: info: including full source code in upload
  43. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  44. dpkg-source: info: unapplying avoid_setuptools_scm.patch
  45. I: pbuilder: network access will be disabled during build
  46. I: Current time: Mon Feb 22 23:15:02 +08 2021
  47. I: pbuilder-time-stamp: 1614006902
  48. I: Building the build Environment
  49. I: extracting base tarball [/var/cache/pbuilder/base.tgz]
  50. I: copying local configuration
  51. I: mounting /proc filesystem
  52. I: mounting /sys filesystem
  53. I: creating /{dev,run}/shm
  54. I: mounting /dev/pts filesystem
  55. I: redirecting /dev/ptmx to /dev/pts/ptmx
  56. I: Mounting /var/cache/pbuilder/result
  57. I: policy-rc.d already exists
  58. I: Obtaining the cached apt archive contents
  59. I: Copying source file
  60. I: copying [../scanpy_1.6.0-1.dsc]
  61. I: copying [../scanpy_1.6.0.orig.tar.gz]
  62. I: copying [../scanpy_1.6.0-1.debian.tar.xz]
  63. I: Extracting source
  64. dpkg-source: warning: extracting unsigned source package (scanpy_1.6.0-1.dsc)
  65. dpkg-source: info: extracting scanpy in scanpy-1.6.0
  66. dpkg-source: info: unpacking scanpy_1.6.0.orig.tar.gz
  67. dpkg-source: info: unpacking scanpy_1.6.0-1.debian.tar.xz
  68. dpkg-source: info: using patch list from debian/patches/series
  69. dpkg-source: info: applying avoid_setuptools_scm.patch
  70. I: Not using root during the build.
  71. I: Installing the build-deps
  72. I: user script /var/cache/pbuilder/build/24818/tmp/hooks/D70results starting
  73. Get:1 http://mirror.0x.sg/debian sid InRelease [153 kB]
  74. Get:2 http://mirror.0x.sg/debian sid/main Sources.diff/Index [63.6 kB]
  75. Get:3 http://mirror.0x.sg/debian sid/main amd64 Packages.diff/Index [63.6 kB]
  76. Get:4 http://mirror.0x.sg/debian sid/main Sources T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [16.8 kB]
  77. Get:4 http://mirror.0x.sg/debian sid/main Sources T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [16.8 kB]
  78. Get:5 http://mirror.0x.sg/debian sid/main amd64 Packages T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [30.3 kB]
  79. Get:5 http://mirror.0x.sg/debian sid/main amd64 Packages T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [30.3 kB]
  80. Fetched 328 kB in 27s (12.2 kB/s)
  81. Reading package lists...
  82. I: user script /var/cache/pbuilder/build/24818/tmp/hooks/D70results finished
  83.  -> Attempting to satisfy build-dependencies
  84.  -> Creating pbuilder-satisfydepends-dummy package
  85. Package: pbuilder-satisfydepends-dummy
  86. Version: 0.invalid.0
  87. Architecture: amd64
  88. Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
  89. Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
  90.  This package was created automatically by pbuilder to satisfy the
  91.  build-dependencies of the package being currently built.
  92. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-wheel, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3-h5py, python3-tables, python3-tqdm, python3-importlib-metadata, python3-sklearn, python3-statsmodels, python3-patsy, python3-networkx, python3-natsort, python3-joblib, python3-numba, umap-learn, python3-harmony, python3-zarr
  93. dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb''dbus-user-session_1.12.20-2_amd64.deb' added
  94. I: new cache content 'dbus_1.12.20-2_amd64.deb' added
  95. I: new cache content 'libdbus-1-3_1.12.20-2_amd64.deb' added
  96. I: Building the package
  97. I: Running cd /build/scanpy-1.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -sa
  98. dpkg-buildpackage: info: source package scanpy
  99. dpkg-buildpackage: info: source version 1.6.0-1
  100. dpkg-buildpackage: info: source distribution UNRELEASED
  101. dpkg-buildpackage: info: source changed by Steffen Moeller <moeller@debian.org>
  102.  dpkg-source --before-build .
  103. dpkg-buildpackage: info: host architecture amd64
  104. dpkg-source: info: using options from scanpy-1.6.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  105.  debian/rules clean
  106. dh clean --with python3 --buildsystem=pybuild
  107.    dh_auto_clean -O--buildsystem=pybuild
  108.         install -d /build/scanpy-1.6.0/debian/.debhelper/generated/_source/home
  109.         pybuild --clean -i python{version} -p 3.9
  110. I: pybuild base:232: python3.9 setup.py clean
  111. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  112.   warnings.warn(msg)
  113. running clean
  114. removing '/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build' (and everything under it)
  115. 'build/bdist.linux-x86_64' does not exist -- can't clean it
  116. 'build/scripts-3.9' does not exist -- can't clean it
  117.         rm -rf .pybuild/
  118.         find . -name \*.pyc -exec rm {} \;
  119.    dh_autoreconf_clean -O--buildsystem=pybuild
  120.    dh_clean -O--buildsystem=pybuild
  121.         rm -f debian/debhelper-build-stamp
  122.         rm -rf debian/.debhelper/
  123.         rm -f -- debian/python3-scanpy.substvars debian/files
  124.         rm -fr -- debian/python3-scanpy/ debian/tmp/
  125.         find .  \( \( \
  126.                 \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
  127.                 \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
  128.                  -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
  129.                  -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
  130.                  -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
  131.                 \) -exec rm -f {} + \) -o \
  132.                 \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
  133.  dpkg-source -b .
  134. dpkg-source: info: using options from scanpy-1.6.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  135. dpkg-source: info: using source format '3.0 (quilt)'
  136. dpkg-source: info: building scanpy using existing ./scanpy_1.6.0.orig.tar.gz
  137. dpkg-source: info: using patch list from debian/patches/series
  138. dpkg-source: info: building scanpy in scanpy_1.6.0-1.debian.tar.xz
  139. dpkg-source: info: building scanpy in scanpy_1.6.0-1.dsc
  140.  debian/rules binary
  141. dh binary --with python3 --buildsystem=pybuild
  142.    dh_update_autotools_config -O--buildsystem=pybuild
  143.    dh_autoreconf -O--buildsystem=pybuild
  144.    dh_auto_configure -O--buildsystem=pybuild
  145.         install -d /build/scanpy-1.6.0/debian/.debhelper/generated/_source/home
  146.         pybuild --configure -i python{version} -p 3.9
  147. I: pybuild base:232: python3.9 setup.py config
  148. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  149.   warnings.warn(msg)
  150. running config
  151.    dh_auto_build -O--buildsystem=pybuild
  152.         pybuild --build -i python{version} -p 3.9
  153. I: pybuild base:232: /usr/bin/python3 setup.py build
  154. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  155.   warnings.warn(msg)
  156. running build
  157. running build_py
  158. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  159. copying scanpy/get.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  160. copying scanpy/_settings.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  161. copying scanpy/readwrite.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  162. copying scanpy/_compat.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  163. copying scanpy/cli.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  164. copying scanpy/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  165. copying scanpy/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  166. copying scanpy/__main__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  167. copying scanpy/logging.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  168. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/neighbors
  169. copying scanpy/neighbors/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/neighbors
  170. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/sim_models
  171. copying scanpy/sim_models/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/sim_models
  172. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  173. copying scanpy/api/pl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  174. copying scanpy/api/queries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  175. copying scanpy/api/export_to.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  176. copying scanpy/api/datasets.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  177. copying scanpy/api/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  178. copying scanpy/api/tl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  179. copying scanpy/api/pp.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  180. copying scanpy/api/logging.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  181. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  182. copying scanpy/preprocessing/_pca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  183. copying scanpy/preprocessing/_docs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  184. copying scanpy/preprocessing/_combat.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  185. copying scanpy/preprocessing/_recipes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  186. copying scanpy/preprocessing/_qc.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  187. copying scanpy/preprocessing/_distributed.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  188. copying scanpy/preprocessing/_highly_variable_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  189. copying scanpy/preprocessing/_normalization.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  190. copying scanpy/preprocessing/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  191. copying scanpy/preprocessing/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  192. copying scanpy/preprocessing/_simple.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  193. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  194. copying scanpy/queries/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  195. copying scanpy/queries/_queries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  196. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  197. copying scanpy/datasets/_ebi_expression_atlas.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  198. copying scanpy/datasets/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  199. copying scanpy/datasets/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  200. copying scanpy/datasets/_datasets.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  201. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  202. copying scanpy/tools/_utils_clustering.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  203. copying scanpy/tools/_dendrogram.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  204. copying scanpy/tools/_tsne.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  205. copying scanpy/tools/_rank_genes_groups.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  206. copying scanpy/tools/_dpt.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  207. copying scanpy/tools/_tsne_fix.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  208. copying scanpy/tools/_marker_gene_overlap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  209. copying scanpy/tools/_ingest.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  210. copying scanpy/tools/_pca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  211. copying scanpy/tools/_score_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  212. copying scanpy/tools/_diffmap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  213. copying scanpy/tools/_paga.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  214. copying scanpy/tools/_leiden.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  215. copying scanpy/tools/_top_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  216. copying scanpy/tools/_sim.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  217. copying scanpy/tools/_draw_graph.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  218. copying scanpy/tools/_embedding_density.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  219. copying scanpy/tools/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  220. copying scanpy/tools/_umap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  221. copying scanpy/tools/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  222. copying scanpy/tools/_louvain.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  223. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  224. copying scanpy/external/exporting.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  225. copying scanpy/external/pl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  226. copying scanpy/external/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  227. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  228. copying scanpy/plotting/_dotplot.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  229. copying scanpy/plotting/_docs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  230. copying scanpy/plotting/_rcmod.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  231. copying scanpy/plotting/_baseplot_class.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  232. copying scanpy/plotting/_qc.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  233. copying scanpy/plotting/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  234. copying scanpy/plotting/_stacked_violin.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  235. copying scanpy/plotting/_matrixplot.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  236. copying scanpy/plotting/_preprocessing.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  237. copying scanpy/plotting/palettes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  238. copying scanpy/plotting/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  239. copying scanpy/plotting/_anndata.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  240. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  241. copying scanpy/preprocessing/_deprecated/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  242. copying scanpy/preprocessing/_deprecated/highly_variable_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  243. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  244. copying scanpy/external/tl/_palantir.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  245. copying scanpy/external/tl/_harmony_timeseries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  246. copying scanpy/external/tl/_wishbone.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  247. copying scanpy/external/tl/_phenograph.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  248. copying scanpy/external/tl/_phate.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  249. copying scanpy/external/tl/_trimap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  250. copying scanpy/external/tl/_pypairs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  251. copying scanpy/external/tl/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  252. copying scanpy/external/tl/_sam.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  253. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  254. copying scanpy/external/pp/_dca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  255. copying scanpy/external/pp/_bbknn.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  256. copying scanpy/external/pp/_scvi.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  257. copying scanpy/external/pp/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  258. copying scanpy/external/pp/_harmony_integrate.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  259. copying scanpy/external/pp/_magic.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  260. copying scanpy/external/pp/_mnn_correct.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  261. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  262. copying scanpy/plotting/_tools/paga.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  263. copying scanpy/plotting/_tools/scatterplots.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  264. copying scanpy/plotting/_tools/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  265. running egg_info
  266. creating scanpy.egg-info
  267. writing scanpy.egg-info/PKG-INFO
  268. writing dependency_links to scanpy.egg-info/dependency_links.txt
  269. writing entry points to scanpy.egg-info/entry_points.txt
  270. writing requirements to scanpy.egg-info/requires.txt
  271. writing top-level names to scanpy.egg-info/top_level.txt
  272. writing manifest file 'scanpy.egg-info/SOURCES.txt'
  273. reading manifest file 'scanpy.egg-info/SOURCES.txt'
  274. reading manifest template 'MANIFEST.in'
  275. warning: no previously-included files found matching '.coveragerc'
  276. warning: no previously-included files found matching '.editorconfig'
  277. warning: no previously-included files found matching '.gitattributes'
  278. warning: no previously-included files found matching '.gitignore'
  279. warning: no previously-included files found matching '.readthedocs.yml'
  280. warning: no previously-included files found matching '.travis.yml'
  281. warning: no previously-included files found matching 'CONTRIBUTING.md'
  282. no previously-included directories found matching 'docs'
  283. writing manifest file 'scanpy.egg-info/SOURCES.txt'
  284.    dh_auto_test -O--buildsystem=pybuild
  285.         pybuild --test -i python{version} -p 3.9
  286. I: pybuild base:232: cd /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build; python3.9 -m unittest discover -v
  287. scanpy (unittest.loader._FailedTest) ... ERROR
  288.  
  289. ======================================================================
  290. ERROR: scanpy (unittest.loader._FailedTest)
  291. ----------------------------------------------------------------------
  292. ImportError: Failed to import test module: scanpy
  293. Traceback (most recent call last):
  294.   File "/usr/lib/python3.9/unittest/loader.py", line 470, in _find_test_path
  295.     package = self._get_module_from_name(name)
  296.   File "/usr/lib/python3.9/unittest/loader.py", line 377, in _get_module_from_name
  297.     __import__(name)
  298.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/__init__.py", line 3, in <module>
  299.     from ._utils import pkg_version, check_versions, annotate_doc_types
  300.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/_utils.py", line 18, in <module>
  301.     from anndata import AnnData
  302. ModuleNotFoundError: No module named 'anndata'
  303.  
  304.  
  305. ----------------------------------------------------------------------
  306. Ran 1 test in 0.004s
  307.  
  308. FAILED (errors=1)
  309. E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build; python3.9 -m unittest discover -v
  310.         rm -fr -- /tmp/dh-xdg-rundir-uWmctdi0
  311. dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit code 13
  312. make: *** [debian/rules:8: binary] Error 25
  313. dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
  314. I: copying local configuration
  315. E: Failed autobuilding of package
  316. I: user script /var/cache/pbuilder/build/24818/tmp/hooks/C10shell starting
  317. Reading package lists...
  318. Building dependency tree...
  319. Reading state information...
  320. bash is already the newest version (5.1-2).
  321. The following additional packages will be installed:
  322.   libgpm2 libslang2 libssh2-1 mc-data vim-common vim-runtime xxd
  323. Suggested packages:
  324.   gpm arj catdvi | texlive-binaries dbview djvulibre-bin epub-utils
  325.   genisoimage gv libaspell-dev links | w3m | lynx odt2txt poppler-utils python
  326.   python-boto python-tz unar wimtools xpdf | pdf-viewer zip ctags vim-doc
  327.   vim-scripts
  328. The following NEW packages will be installed:
  329.   libgpm2 libslang2 libssh2-1 mc mc-data vim vim-common vim-runtime xxd
  330. 0 upgraded, 9 newly installed, 0 to remove and 9 not upgraded.
  331. Need to get 0 B/10.7 MB of archives.
  332. After this operation, 46.7 MB of additional disk space will be used.
  333. Selecting previously unselected package xxd.
  334. (Reading database ... 42261 files and directories currently installed.)
  335. Preparing to unpack .../0-xxd_2%3a8.2.2434-2_amd64.deb ...
  336. Unpacking xxd (2:8.2.2434-2) ...
  337. Selecting previously unselected package vim-common.
  338. Preparing to unpack .../1-vim-common_2%3a8.2.2434-2_all.deb ...
  339. Unpacking vim-common (2:8.2.2434-2) ...
  340. Selecting previously unselected package libgpm2:amd64.
  341. Preparing to unpack .../2-libgpm2_1.20.7-8_amd64.deb ...
  342. Unpacking libgpm2:amd64 (1.20.7-8) ...
  343. Selecting previously unselected package libslang2:amd64.
  344. Preparing to unpack .../3-libslang2_2.3.2-5_amd64.deb ...
  345. Unpacking libslang2:amd64 (2.3.2-5) ...
  346. Selecting previously unselected package libssh2-1:amd64.
  347. Preparing to unpack .../4-libssh2-1_1.9.0-2_amd64.deb ...
  348. Unpacking libssh2-1:amd64 (1.9.0-2) ...
  349. Selecting previously unselected package mc-data.
  350. Preparing to unpack .../5-mc-data_3%3a4.8.26-1_all.deb ...
  351. Unpacking mc-data (3:4.8.26-1) ...
  352. Selecting previously unselected package mc.
  353. Preparing to unpack .../6-mc_3%3a4.8.26-1_amd64.deb ...
  354. Unpacking mc (3:4.8.26-1) ...
  355. Selecting previously unselected package vim-runtime.
  356. Preparing to unpack .../7-vim-runtime_2%3a8.2.2434-2_all.deb ...
  357. Adding 'diversion of /usr/share/vim/vim82/doc/help.txt to /usr/share/vim/vim82/doc/help.txt.vim-tiny by vim-runtime'
  358. Adding 'diversion of /usr/share/vim/vim82/doc/tags to /usr/share/vim/vim82/doc/tags.vim-tiny by vim-runtime'
  359. Unpacking vim-runtime (2:8.2.2434-2) ...
  360. Selecting previously unselected package vim.
  361. Preparing to unpack .../8-vim_2%3a8.2.2434-2_amd64.deb ...
  362. Unpacking vim (2:8.2.2434-2) ...
  363. Setting up libgpm2:amd64 (1.20.7-8) ...
  364. Setting up xxd (2:8.2.2434-2) ...
  365. Setting up vim-common (2:8.2.2434-2) ...
  366. Setting up libslang2:amd64 (2.3.2-5) ...
  367. Setting up mc-data (3:4.8.26-1) ...
  368. Setting up libssh2-1:amd64 (1.9.0-2) ...
  369. Setting up vim-runtime (2:8.2.2434-2) ...
  370. Setting up vim (2:8.2.2434-2) ...
  371. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode
  372. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode
  373. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode
  374. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode
  375. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode
  376. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode
  377. update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode
  378. Setting up mc (3:4.8.26-1) ...
  379. Processing triggers for man-db (2.9.4-2) ...
  380. Processing triggers for mailcap (3.68) ...
  381. Processing triggers for hicolor-icon-theme (0.17-2) ...
  382. Processing triggers for libc-bin (2.31-9) ...
  383. (pbuild24818)root@debian:/tmp#
  384.  
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