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- ```python
- import mygene
- mg = mygene.MyGeneInfo()
- mg.querymany("BRCA1", returnall=True)
- ```
- querying 1-1...done.
- Finished.
- 1 input query terms found no hit:
- ['BRCA1']
- {'out': [{'query': 'BRCA1', 'notfound': True}],
- 'dup': [],
- 'missing': ['BRCA1']}
- ```python
- mg.query("BRCA1", returnall=True)
- ```
- {'max_score': 428.93326,
- 'took': 33,
- 'total': 4778,
- 'hits': [{'_id': '672',
- '_score': 428.93326,
- 'entrezgene': 672,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9606},
- {'_id': '12189',
- '_score': 363.50424,
- 'entrezgene': 12189,
- 'name': 'breast cancer 1, early onset',
- 'symbol': 'Brca1',
- 'taxid': 10090},
- {'_id': '497672',
- '_score': 309.35406,
- 'entrezgene': 497672,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'Brca1',
- 'taxid': 10116},
- {'_id': '101814437',
- '_score': 290.66235,
- 'entrezgene': 101814437,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 59894},
- {'_id': '100347269',
- '_score': 290.66235,
- 'entrezgene': 100347269,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9986},
- {'_id': '101429125',
- '_score': 290.66235,
- 'entrezgene': 101429125,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9361},
- {'_id': '110388719',
- '_score': 290.66235,
- 'entrezgene': 110388719,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 8996},
- {'_id': '106858689',
- '_score': 290.66235,
- 'entrezgene': 106858689,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9172},
- {'_id': '106948321',
- '_score': 290.66235,
- 'entrezgene': 106948321,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'brca1',
- 'taxid': 48699},
- {'_id': '109963046',
- '_score': 290.66235,
- 'entrezgene': 109963046,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'brca1',
- 'taxid': 43700}]}
- ```python
- mg.querymany("BRCA1", species='human', fields="ensembl,symbol,hgnc,alias", scopes="symbol,alias", returnall=True)
- ```
- querying 1-1...done.
- Finished.
- 1 input query terms found dup hits:
- [('BRCA1', 2)]
- {'out': [{'query': 'BRCA1',
- '_id': '672',
- '_score': 85.786644,
- 'alias': ['BRCAI',
- 'BRCC1',
- 'BROVCA1',
- 'FANCS',
- 'IRIS',
- 'PNCA4',
- 'PPP1R53',
- 'PSCP',
- 'RNF53'],
- 'ensembl': {'gene': 'ENSG00000012048',
- 'protein': ['ENSP00000312236',
- 'ENSP00000326002',
- 'ENSP00000350283',
- 'ENSP00000397145',
- 'ENSP00000417148',
- 'ENSP00000417241',
- 'ENSP00000417554',
- 'ENSP00000417988',
- 'ENSP00000418212',
- 'ENSP00000418548',
- 'ENSP00000418775',
- 'ENSP00000418819',
- 'ENSP00000418960',
- 'ENSP00000418986',
- 'ENSP00000419103',
- 'ENSP00000419274',
- 'ENSP00000419481',
- 'ENSP00000419988',
- 'ENSP00000420201',
- 'ENSP00000420253',
- 'ENSP00000420412',
- 'ENSP00000420705',
- 'ENSP00000420781',
- 'ENSP00000465347',
- 'ENSP00000465818',
- 'ENSP00000467329',
- 'ENSP00000478114',
- 'ENSP00000489431',
- 'ENSP00000494614',
- 'ENSP00000495897',
- 'ENSP00000496570'],
- 'transcript': ['ENST00000352993',
- 'ENST00000354071',
- 'ENST00000357654',
- 'ENST00000412061',
- 'ENST00000461221',
- 'ENST00000461574',
- 'ENST00000461798',
- 'ENST00000468300',
- 'ENST00000470026',
- 'ENST00000471181',
- 'ENST00000472490',
- 'ENST00000473961',
- 'ENST00000476777',
- 'ENST00000477152',
- 'ENST00000478531',
- 'ENST00000484087',
- 'ENST00000487825',
- 'ENST00000489037',
- 'ENST00000491747',
- 'ENST00000492859',
- 'ENST00000493795',
- 'ENST00000493919',
- 'ENST00000494123',
- 'ENST00000497488',
- 'ENST00000586385',
- 'ENST00000591534',
- 'ENST00000591849',
- 'ENST00000618469',
- 'ENST00000621897',
- 'ENST00000634433',
- 'ENST00000642945',
- 'ENST00000644379',
- 'ENST00000644555'],
- 'translation': [{'protein': 'ENSP00000312236', 'rna': 'ENST00000352993'},
- {'protein': 'ENSP00000350283', 'rna': 'ENST00000357654'},
- {'protein': 'ENSP00000418960', 'rna': 'ENST00000471181'},
- {'protein': 'ENSP00000417148', 'rna': 'ENST00000468300'},
- {'protein': 'ENSP00000496570', 'rna': 'ENST00000644379'},
- {'protein': 'ENSP00000465818', 'rna': 'ENST00000586385'},
- {'protein': 'ENSP00000467329', 'rna': 'ENST00000591534'},
- {'protein': 'ENSP00000465347', 'rna': 'ENST00000591849'},
- {'protein': 'ENSP00000418775', 'rna': 'ENST00000493795'},
- {'protein': 'ENSP00000418548', 'rna': 'ENST00000461221'},
- {'protein': 'ENSP00000420705', 'rna': 'ENST00000491747'},
- {'protein': 'ENSP00000419481', 'rna': 'ENST00000484087'},
- {'protein': 'ENSP00000420412', 'rna': 'ENST00000478531'},
- {'protein': 'ENSP00000418819', 'rna': 'ENST00000493919'},
- {'protein': 'ENSP00000418212', 'rna': 'ENST00000487825'},
- {'protein': 'ENSP00000417241', 'rna': 'ENST00000461574'},
- {'protein': 'ENSP00000326002', 'rna': 'ENST00000354071'},
- {'protein': 'ENSP00000489431', 'rna': 'ENST00000634433'},
- {'protein': 'ENSP00000397145', 'rna': 'ENST00000412061'},
- {'protein': 'ENSP00000419274', 'rna': 'ENST00000470026'},
- {'protein': 'ENSP00000419988', 'rna': 'ENST00000477152'},
- {'protein': 'ENSP00000420253', 'rna': 'ENST00000492859'},
- {'protein': 'ENSP00000418986', 'rna': 'ENST00000497488'},
- {'protein': 'ENSP00000419103', 'rna': 'ENST00000494123'},
- {'protein': 'ENSP00000420201', 'rna': 'ENST00000473961'},
- {'protein': 'ENSP00000495897', 'rna': 'ENST00000642945'},
- {'protein': 'ENSP00000417554', 'rna': 'ENST00000476777'},
- {'protein': 'ENSP00000417988', 'rna': 'ENST00000461798'},
- {'protein': 'ENSP00000420781', 'rna': 'ENST00000489037'},
- {'protein': 'ENSP00000494614', 'rna': 'ENST00000644555'},
- {'protein': 'ENSP00000478114', 'rna': 'ENST00000618469'}],
- 'type_of_gene': 'protein_coding'},
- 'symbol': 'BRCA1'},
- {'query': 'BRCA1',
- '_id': '394269',
- '_score': 3.1628551,
- 'alias': ['LBRCA1', 'PsiBRCA1', 'pseudo-BRCA1'],
- 'symbol': 'BRCA1P1'}],
- 'dup': [('BRCA1', 2)],
- 'missing': []}
- ```python
- mg.querymany("BRCA1", scopes="symbol,alias", returnall=True)
- ```
- querying 1-1...done.
- Finished.
- 1 input query terms found dup hits:
- [('BRCA1', 10)]
- {'out': [{'query': 'BRCA1',
- '_id': '672',
- '_score': 85.42936,
- 'entrezgene': 672,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9606},
- {'query': 'BRCA1',
- '_id': '12189',
- '_score': 73.24706,
- 'entrezgene': 12189,
- 'name': 'breast cancer 1, early onset',
- 'symbol': 'Brca1',
- 'taxid': 10090},
- {'query': 'BRCA1',
- '_id': '497672',
- '_score': 61.91373,
- 'entrezgene': 497672,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'Brca1',
- 'taxid': 10116},
- {'query': 'BRCA1',
- '_id': '101814437',
- '_score': 58.15771,
- 'entrezgene': 101814437,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 59894},
- {'query': 'BRCA1',
- '_id': '109626726',
- '_score': 58.15771,
- 'entrezgene': 109626726,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'brca1',
- 'taxid': 8255},
- {'query': 'BRCA1',
- '_id': '100347269',
- '_score': 58.15771,
- 'entrezgene': 100347269,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9986},
- {'query': 'BRCA1',
- '_id': '101429125',
- '_score': 58.15771,
- 'entrezgene': 101429125,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9361},
- {'query': 'BRCA1',
- '_id': '106858689',
- '_score': 58.15771,
- 'entrezgene': 106858689,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 9172},
- {'query': 'BRCA1',
- '_id': '110388719',
- '_score': 58.15771,
- 'entrezgene': 110388719,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'BRCA1',
- 'taxid': 8996},
- {'query': 'BRCA1',
- '_id': '102289404',
- '_score': 58.15771,
- 'entrezgene': 102289404,
- 'name': 'BRCA1, DNA repair associated',
- 'symbol': 'brca1',
- 'taxid': 8153}],
- 'dup': [('BRCA1', 10)],
- 'missing': []}
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