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Udegram krasnoyarsk Gonur chokhopani Fail

misnomer001
Jan 10th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1815632879
  4.  
  5. left pops:
  6. Udegram_IA
  7. InPe
  8. Gonur1_BA
  9. Krasnoyarsk_MLBA
  10. Nepal_Chokhopani_2700BP.SG
  11.  
  12. right pops:
  13. Kazakhstan_Botai.SG
  14. Ganj_Dareh_N
  15. PPN
  16. Anatolia_N
  17. Iberia_MN
  18. Russia_MA1.SG
  19. Georgia_Satsurblia.SG
  20. Kostenki14.SG
  21. Russia_Karelia_HG
  22. Serbia_Iron_Gates_HG
  23. Tyumen_HG
  24. Onge.DG
  25. Russia_Shamanka_EN.SG
  26.  
  27. 0 Udegram_IA 12
  28. 1 InPe 10
  29. 2 Gonur1_BA 18
  30. 3 Krasnoyarsk_MLBA 16
  31. 4 Nepal_Chokhopani_2700BP.SG 1
  32. 5 Kazakhstan_Botai.SG 3
  33. 6 Ganj_Dareh_N 7
  34. 7 PPN 8
  35. 8 Anatolia_N 22
  36. 9 Iberia_MN 4
  37. 10 Russia_MA1.SG 1
  38. 11 Georgia_Satsurblia.SG 1
  39. 12 Kostenki14.SG 1
  40. 13 Russia_Karelia_HG 2
  41. 14 Serbia_Iron_Gates_HG 32
  42. 15 Tyumen_HG 2
  43. 16 Onge.DG 2
  44. 17 Russia_Shamanka_EN.SG 10
  45. jackknife block size: 0.050
  46. snps: 1150477 indivs: 152
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150477
  49. coverage: Udegram_IA 1086384
  50. coverage: InPe 878190
  51. coverage: Gonur1_BA 949932
  52. coverage: Krasnoyarsk_MLBA 1082457
  53. coverage: Nepal_Chokhopani_2700BP.SG 1147419
  54. coverage: Kazakhstan_Botai.SG 1149870
  55. coverage: Ganj_Dareh_N 1029695
  56. coverage: PPN 835499
  57. coverage: Anatolia_N 1134099
  58. coverage: Iberia_MN 967760
  59. coverage: Russia_MA1.SG 805960
  60. coverage: Georgia_Satsurblia.SG 801311
  61. coverage: Kostenki14.SG 1048972
  62. coverage: Russia_Karelia_HG 1010733
  63. coverage: Serbia_Iron_Gates_HG 1139259
  64. coverage: Tyumen_HG 807474
  65. coverage: Onge.DG 1120748
  66. coverage: Russia_Shamanka_EN.SG 1149998
  67. dof (jackknife): 469.020
  68. numsnps used: 1150477
  69. codimension 1
  70. f4info:
  71. f4rank: 3 dof: 9 chisq: 19.482 tail: 0.0213959254 dofdiff: 11 chisqdiff: -19.482 taildiff: 1
  72. B:
  73. scale 1.000 1.000 1.000
  74. Ganj_Dareh_N 0.897 2.513 0.831
  75. PPN 0.788 0.572 -0.474
  76. Anatolia_N 1.016 0.316 -0.775
  77. Iberia_MN 0.890 -0.091 -0.332
  78. Russia_MA1.SG 0.126 0.343 0.918
  79. Georgia_Satsurblia.SG 0.739 1.355 -0.209
  80. Kostenki14.SG 0.151 0.521 0.648
  81. Russia_Karelia_HG 0.617 -0.557 0.710
  82. Serbia_Iron_Gates_HG 0.846 -0.994 -0.170
  83. Tyumen_HG 0.202 -0.046 1.089
  84. Onge.DG -1.447 1.145 1.100
  85. Russia_Shamanka_EN.SG -2.221 0.642 -2.478
  86. A:
  87. scale 328.673 824.685 2393.272
  88. InPe -0.120 0.447 0.449
  89. Gonur1_BA 0.425 0.689 -0.968
  90. Krasnoyarsk_MLBA 0.407 -1.795 -0.436
  91. Nepal_Chokhopani_2700BP.SG -1.908 -0.319 -1.634
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 19.482 taildiff: 0.0213959254
  97. B:
  98. scale 1.000 1.000 1.000 1.000
  99. Ganj_Dareh_N 0.925 2.505 1.579 -0.766
  100. PPN 0.838 0.577 -0.214 -0.290
  101. Anatolia_N 1.058 0.313 -0.486 -0.650
  102. Iberia_MN 0.929 -0.082 -0.386 0.395
  103. Russia_MA1.SG 0.122 0.347 0.794 0.569
  104. Georgia_Satsurblia.SG 0.757 1.314 0.493 -1.262
  105. Kostenki14.SG 0.169 0.516 0.462 0.570
  106. Russia_Karelia_HG 0.613 -0.563 0.212 1.382
  107. Serbia_Iron_Gates_HG 0.882 -0.994 -0.695 1.405
  108. Tyumen_HG 0.198 -0.046 0.769 0.978
  109. Onge.DG -1.426 1.184 0.484 1.426
  110. Russia_Shamanka_EN.SG -2.149 0.681 -2.576 -1.279
  111. A:
  112. scale 345.694 826.969 1480.960 4329.016
  113. InPe -0.044 0.829 -0.352 1.791
  114. Gonur1_BA 0.517 0.930 -0.823 0.245
  115. Krasnoyarsk_MLBA 0.473 -1.554 -0.572 0.739
  116. Nepal_Chokhopani_2700BP.SG -1.873 0.180 -1.695 0.432
  117.  
  118.  
  119. best coefficients: 0.624 0.139 0.202 0.035
  120. Jackknife mean: 0.621518629 0.140711535 0.202373962 0.035395874
  121. std. errors: 0.059 0.052 0.014 0.012
  122.  
  123. error covariance (* 1000000)
  124. 3534 -2976 59 -617
  125. -2976 2737 -252 491
  126. 59 -252 205 -12
  127. -617 491 -12 138
  128.  
  129.  
  130. summ: Udegram_IA 4 0.021396 0.622 0.141 0.202 0.035 3534 -2976 59 -617 2737 -252 491 205 -12 138
  131.  
  132. fixed pat wt dof chisq tail prob
  133. 0000 0 9 19.482 0.0213959 0.624 0.139 0.202 0.035
  134. 0001 1 10 27.580 0.00210687 0.778 0.017 0.205 -0.000
  135. 0010 1 10 154.078 5.39286e-28 2.349 -1.062 -0.000 -0.286 infeasible
  136. 0100 1 10 26.149 0.00354539 0.776 -0.000 0.214 0.009
  137. 1000 1 10 142.839 1.10316e-25 0.000 0.655 0.199 0.146
  138. 0011 2 11 190.520 0 0.853 0.147 -0.000 -0.000
  139. 0101 2 11 26.769 0.00497904 0.791 0.000 0.209 -0.000
  140. 0110 2 11 176.095 0 1.044 0.000 -0.000 -0.044 infeasible
  141. 1001 2 11 772.800 0 -0.000 0.849 0.151 -0.000
  142. 1010 2 11 302.689 0 0.000 0.853 -0.000 0.147
  143. 1100 2 11 1293.696 0 -0.000 -0.000 0.783 0.217
  144. 0111 3 12 199.321 0 1.000 0.000 -0.000 -0.000
  145. 1011 3 12 831.164 0 0.000 1.000 -0.000 -0.000
  146. 1101 3 12 2138.190 0 0.000 -0.000 1.000 -0.000
  147. 1110 3 12 3589.261 0 0.000 0.000 -0.000 1.000
  148. best pat: 0000 0.0213959 - -
  149. best pat: 0100 0.00354539 chi(nested): 6.667 p-value for nested model: 0.00982113
  150. best pat: 0101 0.00497904 chi(nested): 0.620 p-value for nested model: 0.430909
  151. best pat: 0111 4.50418e-36 chi(nested): 172.552 p-value for nested model: 2.05057e-39
  152.  
  153. coeffs: 0.624 0.139 0.202 0.035
  154.  
  155. ## dscore:: f_4(Base, Fit, Rbase, right2)
  156. ## genstat:: f_4(Base, Fit, right1, right2)
  157.  
  158. details: InPe Ganj_Dareh_N 0.001766 8.258154
  159. details: Gonur1_BA Ganj_Dareh_N 0.003328 16.921745
  160. details: Krasnoyarsk_MLBA Ganj_Dareh_N -0.004161 -20.464882
  161. details: Nepal_Chokhopani_2700BP.SG Ganj_Dareh_N -0.006438 -17.191156
  162. dscore: Ganj_Dareh_N f4: 0.000496 Z: 2.907552
  163.  
  164. details: InPe PPN 0.000456 1.989339
  165. details: Gonur1_BA PPN 0.002058 9.851794
  166. details: Krasnoyarsk_MLBA PPN 0.000102 0.502334
  167. details: Nepal_Chokhopani_2700BP.SG PPN -0.004311 -12.212651
  168. dscore: PPN f4: 0.000440 Z: 2.458039
  169.  
  170. details: InPe Anatolia_N 0.000131 0.719402
  171. details: Gonur1_BA Anatolia_N 0.002224 12.717134
  172. details: Krasnoyarsk_MLBA Anatolia_N 0.000959 5.061875
  173. details: Nepal_Chokhopani_2700BP.SG Anatolia_N -0.005294 -16.325714
  174. dscore: Anatolia_N f4: 0.000400 Z: 2.729894
  175.  
  176. details: InPe Iberia_MN 0.000115 0.589110
  177. details: Gonur1_BA Iberia_MN 0.001594 8.437835
  178. details: Krasnoyarsk_MLBA Iberia_MN 0.001647 8.294832
  179. details: Nepal_Chokhopani_2700BP.SG Iberia_MN -0.004691 -13.616263
  180. dscore: Iberia_MN f4: 0.000462 Z: 2.994911
  181.  
  182. details: InPe Russia_MA1.SG 0.000481 2.200383
  183. details: Gonur1_BA Russia_MA1.SG 0.000157 0.818816
  184. details: Krasnoyarsk_MLBA Russia_MA1.SG -0.000699 -3.410543
  185. details: Nepal_Chokhopani_2700BP.SG Russia_MA1.SG -0.001507 -3.829351
  186. dscore: Russia_MA1.SG f4: 0.000127 Z: 0.745720
  187.  
  188. details: InPe Georgia_Satsurblia.SG 0.000594 2.491110
  189. details: Gonur1_BA Georgia_Satsurblia.SG 0.002334 11.107799
  190. details: Krasnoyarsk_MLBA Georgia_Satsurblia.SG -0.001863 -8.222654
  191. details: Nepal_Chokhopani_2700BP.SG Georgia_Satsurblia.SG -0.004610 -11.206794
  192. dscore: Georgia_Satsurblia.SG f4: 0.000156 Z: 0.842811
  193.  
  194. details: InPe Kostenki14.SG 0.000753 3.174733
  195. details: Gonur1_BA Kostenki14.SG 0.000664 2.912054
  196. details: Krasnoyarsk_MLBA Kostenki14.SG -0.000787 -3.235821
  197. details: Nepal_Chokhopani_2700BP.SG Kostenki14.SG -0.001328 -2.851766
  198. dscore: Kostenki14.SG f4: 0.000356 Z: 1.867816
  199.  
  200. details: InPe Russia_Karelia_HG 0.000035 0.163167
  201. details: Gonur1_BA Russia_Karelia_HG 0.000290 1.430929
  202. details: Krasnoyarsk_MLBA Russia_Karelia_HG 0.002131 10.240112
  203. details: Nepal_Chokhopani_2700BP.SG Russia_Karelia_HG -0.003632 -9.037882
  204. dscore: Russia_Karelia_HG f4: 0.000367 Z: 2.119953
  205.  
  206. details: InPe Serbia_Iron_Gates_HG -0.000303 -1.760541
  207. details: Gonur1_BA Serbia_Iron_Gates_HG 0.000710 4.321367
  208. details: Krasnoyarsk_MLBA Serbia_Iron_Gates_HG 0.003604 19.383962
  209. details: Nepal_Chokhopani_2700BP.SG Serbia_Iron_Gates_HG -0.004153 -12.852996
  210. dscore: Serbia_Iron_Gates_HG f4: 0.000494 Z: 3.557678
  211.  
  212. details: InPe Tyumen_HG 0.000247 1.128823
  213. details: Gonur1_BA Tyumen_HG -0.000126 -0.643511
  214. details: Krasnoyarsk_MLBA Tyumen_HG 0.000249 1.323945
  215. details: Nepal_Chokhopani_2700BP.SG Tyumen_HG -0.001852 -5.070477
  216. dscore: Tyumen_HG f4: 0.000122 Z: 0.709532
  217.  
  218. details: InPe Onge.DG 0.001945 8.918724
  219. details: Gonur1_BA Onge.DG -0.000923 -4.414983
  220. details: Krasnoyarsk_MLBA Onge.DG -0.004110 -18.402340
  221. details: Nepal_Chokhopani_2700BP.SG Onge.DG 0.007629 17.269668
  222. dscore: Onge.DG f4: 0.000520 Z: 2.887585
  223.  
  224. details: InPe Russia_Shamanka_EN.SG 0.001123 6.213092
  225. details: Gonur1_BA Russia_Shamanka_EN.SG -0.001045 -6.398232
  226. details: Krasnoyarsk_MLBA Russia_Shamanka_EN.SG -0.003417 -20.089395
  227. details: Nepal_Chokhopani_2700BP.SG Russia_Shamanka_EN.SG 0.014626 38.148572
  228. dscore: Russia_Shamanka_EN.SG f4: 0.000376 Z: 2.596475
  229.  
  230. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 2.908
  231. gendstat: Kazakhstan_Botai.SG PPN 2.458
  232. gendstat: Kazakhstan_Botai.SG Anatolia_N 2.730
  233. gendstat: Kazakhstan_Botai.SG Iberia_MN 2.995
  234. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 0.746
  235. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.843
  236. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 1.868
  237. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 2.120
  238. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 3.558
  239. gendstat: Kazakhstan_Botai.SG Tyumen_HG 0.710
  240. gendstat: Kazakhstan_Botai.SG Onge.DG 2.888
  241. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 2.596
  242. gendstat: Ganj_Dareh_N PPN -0.334
  243. gendstat: Ganj_Dareh_N Anatolia_N -0.705
  244. gendstat: Ganj_Dareh_N Iberia_MN -0.222
  245. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.796
  246. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.865
  247. gendstat: Ganj_Dareh_N Kostenki14.SG -0.705
  248. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.655
  249. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.015
  250. gendstat: Ganj_Dareh_N Tyumen_HG -1.832
  251. gendstat: Ganj_Dareh_N Onge.DG 0.132
  252. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.713
  253. gendstat: PPN Anatolia_N -0.336
  254. gendstat: PPN Iberia_MN 0.155
  255. gendstat: PPN Russia_MA1.SG -1.418
  256. gendstat: PPN Georgia_Satsurblia.SG -1.455
  257. gendstat: PPN Kostenki14.SG -0.425
  258. gendstat: PPN Russia_Karelia_HG -0.359
  259. gendstat: PPN Serbia_Iron_Gates_HG 0.344
  260. gendstat: PPN Tyumen_HG -1.440
  261. gendstat: PPN Onge.DG 0.414
  262. gendstat: PPN Russia_Shamanka_EN.SG -0.364
  263. gendstat: Anatolia_N Iberia_MN 0.586
  264. gendstat: Anatolia_N Russia_MA1.SG -1.442
  265. gendstat: Anatolia_N Georgia_Satsurblia.SG -1.442
  266. gendstat: Anatolia_N Kostenki14.SG -0.255
  267. gendstat: Anatolia_N Russia_Karelia_HG -0.188
  268. gendstat: Anatolia_N Serbia_Iron_Gates_HG 0.863
  269. gendstat: Anatolia_N Tyumen_HG -1.414
  270. gendstat: Anatolia_N Onge.DG 0.742
  271. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.168
  272. gendstat: Iberia_MN Russia_MA1.SG -1.713
  273. gendstat: Iberia_MN Georgia_Satsurblia.SG -1.566
  274. gendstat: Iberia_MN Kostenki14.SG -0.568
  275. gendstat: Iberia_MN Russia_Karelia_HG -0.501
  276. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.260
  277. gendstat: Iberia_MN Tyumen_HG -1.645
  278. gendstat: Iberia_MN Onge.DG 0.317
  279. gendstat: Iberia_MN Russia_Shamanka_EN.SG -0.539
  280. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.126
  281. gendstat: Russia_MA1.SG Kostenki14.SG 1.029
  282. gendstat: Russia_MA1.SG Russia_Karelia_HG 1.100
  283. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 2.064
  284. gendstat: Russia_MA1.SG Tyumen_HG -0.025
  285. gendstat: Russia_MA1.SG Onge.DG 1.874
  286. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 1.269
  287. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 0.910
  288. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.961
  289. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.841
  290. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.155
  291. gendstat: Georgia_Satsurblia.SG Onge.DG 1.765
  292. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 1.136
  293. gendstat: Kostenki14.SG Russia_Karelia_HG 0.050
  294. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.786
  295. gendstat: Kostenki14.SG Tyumen_HG -1.009
  296. gendstat: Kostenki14.SG Onge.DG 0.818
  297. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 0.106
  298. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.784
  299. gendstat: Russia_Karelia_HG Tyumen_HG -1.153
  300. gendstat: Russia_Karelia_HG Onge.DG 0.744
  301. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG 0.048
  302. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.987
  303. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.151
  304. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -0.796
  305. gendstat: Tyumen_HG Onge.DG 1.781
  306. gendstat: Tyumen_HG Russia_Shamanka_EN.SG 1.297
  307. gendstat: Onge.DG Russia_Shamanka_EN.SG -0.993
  308.  
  309. ## end of run
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