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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- S1: steppe
- indivname: steppe.ind
- snpname: steppe.snp
- genotypename: steppe.geno
- popleft: left
- popright: right
- details: YES
- inbreed: NO
- ## qpAdm version: 1520
- seed: 2035518183
- inbreed set NO
- allsnps set NO. It is recommended that allsnps be set explicitly
- inbreed set NO
- packed geno read OK
- end of inpack
- left pops:
- Steppe_Eneolithic
- EEHG
- CHG_Georgia
- right pops:
- Mbuti.DG
- China_Paleo
- BIR.SG
- IVC_Shahr_i_Sokhta
- GanjDareh_N
- 0 Steppe_Eneolithic 3
- 1 EEHG 2
- 2 CHG_Georgia 2
- 3 Mbuti.DG 4
- 4 China_Paleo 2
- 5 BIR.SG 8
- 6 IVC_Shahr_i_Sokhta 6
- 7 GanjDareh_N 8
- jackknife block size: 0.050
- snps: 1150502 indivs: 35
- number of blocks for block jackknife: 714
- ## ncols: 1150502
- coverage: Steppe_Eneolithic 1008226
- coverage: EEHG 1010733
- coverage: CHG_Georgia 1149558
- coverage: Mbuti.DG 1121438
- coverage: China_Paleo 1031422
- coverage: BIR.SG 1143532
- coverage: IVC_Shahr_i_Sokhta 900733
- coverage: GanjDareh_N 1057358
- Effective number of blocks: 626.469
- numsnps used: 864584
- codimension 1
- f4info:
- f4rank: 1 dof: 3 chisq: 25.317 tail: 1.32531316e-05 dofdiff: 5 chisqdiff: -25.317 taildiff: 1
- B:
- scale 1.000
- China_Paleo 1.266
- BIR.SG 0.915
- IVC_Shahr_i_Sokhta 0.071
- GanjDareh_N -1.247
- A:
- scale 796.440
- EEHG 1.178
- CHG_Georgia -0.783
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 3 chisqdiff: 25.317 taildiff: 1.32531316e-05
- B:
- scale 664.605 668.292
- China_Paleo 0.712 -1.512
- BIR.SG 0.635 -0.976
- IVC_Shahr_i_Sokhta -0.619 -0.817
- GanjDareh_N -1.645 0.307
- A:
- scale 1.414 1.414
- EEHG 1.414 0.000
- CHG_Georgia 0.000 1.414
- best coefficients: 0.399 0.601
- Jackknife mean: 0.399670897 0.600329103
- std. errors: 0.042 0.042
- error covariance (* 1,000,000)
- 1783 -1783
- -1783 1783
- summ: Steppe_Eneolithic 2 0.000013 0.400 0.600 1783 -1783 1783
- fixed pat wt dof chisq tail prob
- 00 0 3 25.317 1.32531e-05 0.399 0.601
- 01 1 4 156.355 0 1.000 0.000
- 10 1 4 92.556 3.77098e-19 0.000 1.000
- best pat: 00 1.32531e-05 - -
- best pat: 10 3.77098e-19 chi(nested): 67.238 p-value for nested model: 2.4058e-16
- coeffs: 0.399 0.601
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: EEHG China_Paleo 0.001072 3.018478
- details: CHG_Georgia China_Paleo -0.002262 -6.538253
- dscore: China_Paleo f4: -0.000931 Z: -3.342726
- details: EEHG BIR.SG 0.000955 3.276501
- details: CHG_Georgia BIR.SG -0.001461 -5.230014
- dscore: BIR.SG f4: -0.000496 Z: -2.196361
- details: EEHG IVC_Shahr_i_Sokhta -0.000931 -2.983650
- details: CHG_Georgia IVC_Shahr_i_Sokhta -0.001223 -4.133093
- dscore: IVC_Shahr_i_Sokhta f4: -0.001106 Z: -4.536531
- details: EEHG GanjDareh_N -0.002475 -7.860857
- details: CHG_Georgia GanjDareh_N 0.000460 1.536001
- dscore: GanjDareh_N f4: -0.000712 Z: -2.895745
- gendstat: Mbuti.DG China_Paleo -3.343
- gendstat: Mbuti.DG BIR.SG -2.196
- gendstat: Mbuti.DG IVC_Shahr_i_Sokhta -4.537
- gendstat: Mbuti.DG GanjDareh_N -2.896
- gendstat: China_Paleo BIR.SG 1.862
- gendstat: China_Paleo IVC_Shahr_i_Sokhta -0.643
- gendstat: China_Paleo GanjDareh_N 0.768
- gendstat: BIR.SG IVC_Shahr_i_Sokhta -2.993
- gendstat: BIR.SG GanjDareh_N -0.992
- gendstat: IVC_Shahr_i_Sokhta GanjDareh_N 1.794
- ##end of qpAdm: 15.803 seconds cpu 1038.524 Mbytes in use
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