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misnomer001

spgt_o kashkarchi

misnomer001
Mar 14th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1779294490
  4. read 1073741824 bytes
  5. read 2057898697 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. SPGT_o
  11. SPGT
  12. Uzbekistan_BA_Dzharkutan1
  13. Uzbekistan_BA_Kashkarchi
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26.  
  27. 0 SPGT_o 2
  28. 1 SPGT 78
  29. 2 Uzbekistan_BA_Dzharkutan1 7
  30. 3 Uzbekistan_BA_Kashkarchi 2
  31. 4 Cameroon_SMA.DG 1
  32. 5 EEHG 5
  33. 6 WSHG 3
  34. 7 PPN 11
  35. 8 WEHG 33
  36. 9 Anatolia_N 22
  37. 10 Iran_GanjDareh_N 8
  38. 11 Russia_UstBelaya_Angara 8
  39. 12 ONG.SG 6
  40. 13 Botai 2
  41. jackknife block size: 0.050
  42. snps: 1150507 indivs: 188
  43. number of blocks for block jackknife: 713
  44. ## ncols: 1150507
  45. coverage: SPGT_o 673520
  46. coverage: SPGT 1133349
  47. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  48. coverage: Uzbekistan_BA_Kashkarchi 766558
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: Russia_UstBelaya_Angara 1072574
  57. coverage: ONG.SG 1143397
  58. coverage: Botai 926654
  59. dof (jackknife): 623.979
  60. numsnps used: 1150507
  61. codimension 1
  62. f4info:
  63. f4rank: 2 dof: 7 chisq: 3.203 tail: 0.865615492 dofdiff: 9 chisqdiff: -3.203 taildiff: 1
  64. B:
  65. scale 1.000 1.000
  66. EEHG 1.450 -0.225
  67. WSHG 1.102 -0.408
  68. PPN 0.758 1.112
  69. WEHG 1.771 -0.134
  70. Anatolia_N 1.015 1.050
  71. Iran_GanjDareh_N -0.242 1.890
  72. Russia_UstBelaya_Angara 0.158 -1.088
  73. ONG.SG -0.117 -1.179
  74. Botai 0.920 -0.528
  75. A:
  76. scale 675.424 1781.608
  77. SPGT -0.624 -0.304
  78. Uzbekistan_BA_Dzharkutan1 -0.505 1.693
  79. Uzbekistan_BA_Kashkarchi 1.535 0.204
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 3.203 taildiff: 0.865615492
  85. B:
  86. scale 1338.385 887.048 392.332
  87. EEHG -1.393 -0.925 1.402
  88. WSHG -0.785 -0.762 1.132
  89. PPN -0.618 0.811 0.911
  90. WEHG -1.885 -1.102 1.677
  91. Anatolia_N -1.113 0.463 1.085
  92. Iran_GanjDareh_N 0.170 1.952 -0.023
  93. Russia_UstBelaya_Angara 0.514 -0.722 0.252
  94. ONG.SG 0.761 -0.696 -0.044
  95. Botai -0.629 -0.812 0.931
  96. A:
  97. scale 1.732 1.732 1.732
  98. SPGT 1.732 0.000 0.000
  99. Uzbekistan_BA_Dzharkutan1 0.000 1.732 0.000
  100. Uzbekistan_BA_Kashkarchi 0.000 0.000 1.732
  101.  
  102.  
  103. best coefficients: 0.635 0.080 0.285
  104. Jackknife mean: 0.635570390 0.080144915 0.284284695
  105. std. errors: 0.072 0.065 0.035
  106.  
  107. error covariance (* 1,000,000)
  108. 5246 -4118 -1127
  109. -4118 4190 -72
  110. -1127 -72 1199
  111.  
  112.  
  113. summ: SPGT_o 3 0.865615 0.636 0.080 0.284 5246 -4118 -1127 4190 -72 ...
  114. 1199
  115.  
  116. fixed pat wt dof chisq tail prob
  117. 000 0 7 3.203 0.865615 0.635 0.080 0.285
  118. 001 1 8 69.937 5.05837e-12 0.908 0.092 0.000
  119. 010 1 8 5.144 0.742097 0.713 0.000 0.287
  120. 100 1 8 73.508 9.8075e-13 0.000 0.560 0.440
  121. 011 2 9 71.606 7.36825e-12 1.000 0.000 0.000
  122. 101 2 9 226.924 0 0.000 1.000 0.000
  123. 110 2 9 259.658 0 0.000 0.000 1.000
  124. best pat: 000 0.865615 - -
  125. best pat: 010 0.742097 chi(nested): 1.941 p-value for nested model: 0.16357
  126. best pat: 011 7.36825e-12 chi(nested): 66.462 p-value for nested model: 3.56698e-16
  127.  
  128. coeffs: 0.635 0.080 0.285
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: SPGT EEHG -0.001041 -3.419492
  134. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.001043 -3.218249
  135. details: Uzbekistan_BA_Kashkarchi EEHG 0.003575 9.948599
  136. dscore: EEHG f4: 0.000272 Z: 0.916010
  137.  
  138. details: SPGT WSHG -0.000587 -1.678075
  139. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000859 -2.336503
  140. details: Uzbekistan_BA_Kashkarchi WSHG 0.002885 6.868669
  141. dscore: WSHG f4: 0.000380 Z: 1.105590
  142.  
  143. details: SPGT PPN -0.000462 -1.509243
  144. details: Uzbekistan_BA_Dzharkutan1 PPN 0.000914 2.801525
  145. details: Uzbekistan_BA_Kashkarchi PPN 0.002323 6.273201
  146. dscore: PPN f4: 0.000441 Z: 1.453327
  147.  
  148. details: SPGT WEHG -0.001409 -4.758737
  149. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.001243 -3.892990
  150. details: Uzbekistan_BA_Kashkarchi WEHG 0.004274 11.158712
  151. dscore: WEHG f4: 0.000222 Z: 0.739605
  152.  
  153. details: SPGT Anatolia_N -0.000832 -3.240937
  154. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.000522 1.888255
  155. details: Uzbekistan_BA_Kashkarchi Anatolia_N 0.002765 8.476625
  156. dscore: Anatolia_N f4: 0.000300 Z: 1.172704
  157.  
  158. details: SPGT Iran_GanjDareh_N 0.000127 0.473747
  159. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002200 7.588431
  160. details: Uzbekistan_BA_Kashkarchi Iran_GanjDareh_N -0.000058 -0.178806
  161. dscore: Iran_GanjDareh_N f4: 0.000240 Z: 0.906762
  162.  
  163. details: SPGT Russia_UstBelaya_Angara 0.000384 1.385478
  164. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.819305
  165. details: Uzbekistan_BA_Kashkarchi Russia_UstBelaya_Angara 0.000644 1.927562
  166. dscore: Russia_UstBelaya_Angara f4: 0.000362 Z: 1.327916
  167.  
  168. details: SPGT ONG.SG 0.000568 2.016784
  169. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000784 -2.662849
  170. details: Uzbekistan_BA_Kashkarchi ONG.SG -0.000111 -0.325814
  171. dscore: ONG.SG f4: 0.000267 Z: 0.967412
  172.  
  173. details: SPGT Botai -0.000470 -1.439477
  174. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000915 -2.716760
  175. details: Uzbekistan_BA_Kashkarchi Botai 0.002373 6.227356
  176. dscore: Botai f4: 0.000304 Z: 0.955593
  177.  
  178. gendstat: Cameroon_SMA.DG EEHG 0.916
  179. gendstat: Cameroon_SMA.DG WSHG 1.106
  180. gendstat: Cameroon_SMA.DG PPN 1.453
  181. gendstat: Cameroon_SMA.DG WEHG 0.740
  182. gendstat: Cameroon_SMA.DG Anatolia_N 1.173
  183. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.907
  184. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.328
  185. gendstat: Cameroon_SMA.DG ONG.SG 0.967
  186. gendstat: Cameroon_SMA.DG Botai 0.956
  187. gendstat: EEHG WSHG 0.399
  188. gendstat: EEHG PPN 0.579
  189. gendstat: EEHG WEHG -0.220
  190. gendstat: EEHG Anatolia_N 0.115
  191. gendstat: EEHG Iran_GanjDareh_N -0.122
  192. gendstat: EEHG Russia_UstBelaya_Angara 0.345
  193. gendstat: EEHG ONG.SG -0.019
  194. gendstat: EEHG Botai 0.116
  195. gendstat: WSHG PPN 0.182
  196. gendstat: WSHG WEHG -0.522
  197. gendstat: WSHG Anatolia_N -0.259
  198. gendstat: WSHG Iran_GanjDareh_N -0.458
  199. gendstat: WSHG Russia_UstBelaya_Angara -0.063
  200. gendstat: WSHG ONG.SG -0.341
  201. gendstat: WSHG Botai -0.277
  202. gendstat: PPN WEHG -0.894
  203. gendstat: PPN Anatolia_N -0.749
  204. gendstat: PPN Iran_GanjDareh_N -0.754
  205. gendstat: PPN Russia_UstBelaya_Angara -0.268
  206. gendstat: PPN ONG.SG -0.546
  207. gendstat: PPN Botai -0.428
  208. gendstat: WEHG Anatolia_N 0.401
  209. gendstat: WEHG Iran_GanjDareh_N 0.070
  210. gendstat: WEHG Russia_UstBelaya_Angara 0.531
  211. gendstat: WEHG ONG.SG 0.149
  212. gendstat: WEHG Botai 0.284
  213. gendstat: Anatolia_N Iran_GanjDareh_N -0.269
  214. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.250
  215. gendstat: Anatolia_N ONG.SG -0.123
  216. gendstat: Anatolia_N Botai 0.012
  217. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.479
  218. gendstat: Iran_GanjDareh_N ONG.SG 0.096
  219. gendstat: Iran_GanjDareh_N Botai 0.219
  220. gendstat: Russia_UstBelaya_Angara ONG.SG -0.402
  221. gendstat: Russia_UstBelaya_Angara Botai -0.229
  222. gendstat: ONG.SG Botai 0.121
  223.  
  224. ##end of qpAdm: 361.998 seconds cpu 1257.619 Mbytes in use
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