API tools faq
paste
Advertisement
march_happy

Untitled

march_happy
Oct 30th, 2019
1,034
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
Make 9.69 KB | None | 0 0
raw download clone embed print report
  1. [100%] Linking CXX executable ../../bin/gmx
  2. /usr/bin/ld: warning: libfftw3f.so.3, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  3. /usr/bin/ld: warning: libmkl_intel_lp64.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  4. /usr/bin/ld: warning: libmkl_intel_thread.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  5. /usr/bin/ld: warning: libmkl_core.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  6. /usr/bin/ld: warning: libiomp5.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  7. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft_r2c'
  8. ../../lib/libgromacs.so.4.0.0: undefined reference to `ssteqr_'
  9. ../../lib/libgromacs.so.4.0.0: undefined reference to `dsteqr_'
  10. ../../lib/libgromacs.so.4.0.0: undefined reference to `sger_'
  11. ../../lib/libgromacs.so.4.0.0: undefined reference to `slasr_'
  12. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlartg_'
  13. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_free'
  14. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_malloc'
  15. ../../lib/libgromacs.so.4.0.0: undefined reference to `dswap_'
  16. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlacpy_'
  17. ../../lib/libgromacs.so.4.0.0: undefined reference to `dnrm2_'
  18. ../../lib/libgromacs.so.4.0.0: undefined reference to `dscal_'
  19. ../../lib/libgromacs.so.4.0.0: undefined reference to `slapy2_'
  20. ../../lib/libgromacs.so.4.0.0: undefined reference to `sswap_'
  21. ../../lib/libgromacs.so.4.0.0: undefined reference to `sscal_'
  22. ../../lib/libgromacs.so.4.0.0: undefined reference to `sdot_'
  23. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute'
  24. ../../lib/libgromacs.so.4.0.0: undefined reference to `slascl_'
  25. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgetri_'
  26. ../../lib/libgromacs.so.4.0.0: undefined reference to `slaset_'
  27. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft_c2r'
  28. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft'
  29. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_version'
  30. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlapy2_'
  31. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlaev2_'
  32. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlarnv_'
  33. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlanst_'
  34. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlascl_'
  35. ../../lib/libgromacs.so.4.0.0: undefined reference to `slacpy_'
  36. ../../lib/libgromacs.so.4.0.0: undefined reference to `daxpy_'
  37. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_dft_c2r_2d'
  38. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgetrf_'
  39. ../../lib/libgromacs.so.4.0.0: undefined reference to `dorm2r_'
  40. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft_r2c'
  41. ../../lib/libgromacs.so.4.0.0: undefined reference to `dcopy_'
  42. ../../lib/libgromacs.so.4.0.0: undefined reference to `dger_'
  43. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgeqr2_'
  44. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft'
  45. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft_r2c'
  46. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlasr_'
  47. ../../lib/libgromacs.so.4.0.0: undefined reference to `saxpy_'
  48. ../../lib/libgromacs.so.4.0.0: undefined reference to `slarnv_'
  49. ../../lib/libgromacs.so.4.0.0: undefined reference to `snrm2_'
  50. ../../lib/libgromacs.so.4.0.0: undefined reference to `slartg_'
  51. ../../lib/libgromacs.so.4.0.0: undefined reference to `sgeqr2_'
  52. ../../lib/libgromacs.so.4.0.0: undefined reference to `slaev2_'
  53. ../../lib/libgromacs.so.4.0.0: undefined reference to `slanst_'
  54. ../../lib/libgromacs.so.4.0.0: undefined reference to `ddot_'
  55. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft_c2r'
  56. ../../lib/libgromacs.so.4.0.0: undefined reference to `sgemv_'
  57. ../../lib/libgromacs.so.4.0.0: undefined reference to `sorm2r_'
  58. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft_c2r'
  59. ../../lib/libgromacs.so.4.0.0: undefined reference to `ssyevr_'
  60. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlaset_'
  61. ../../lib/libgromacs.so.4.0.0: undefined reference to `scopy_'
  62. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_destroy_plan'
  63. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_dft_r2c_2d'
  64. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgemv_'
  65. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft'
  66. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_cleanup'
  67. clang-8: error: linker command failed with exit code 1 (use -v to see invocation)
  68. make[2]: *** [bin/gmx] Error 1
  69. make[1]: *** [src/programs/CMakeFiles/gmx.dir/all] Error 2
  70. make[1]: *** Waiting for unfinished jobs....
  71. [100%] Linking CXX executable ../../bin/template
  72. /usr/bin/ld: warning: libfftw3f.so.3, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  73. /usr/bin/ld: warning: libmkl_intel_lp64.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  74. /usr/bin/ld: warning: libmkl_intel_thread.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  75. /usr/bin/ld: warning: libmkl_core.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  76. /usr/bin/ld: warning: libiomp5.so, needed by ../../lib/libgromacs.so.4.0.0, not found (try using -rpath or -rpath-link)
  77. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft_r2c'
  78. ../../lib/libgromacs.so.4.0.0: undefined reference to `ssteqr_'
  79. ../../lib/libgromacs.so.4.0.0: undefined reference to `dsteqr_'
  80. ../../lib/libgromacs.so.4.0.0: undefined reference to `sger_'
  81. ../../lib/libgromacs.so.4.0.0: undefined reference to `slasr_'
  82. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlartg_'
  83. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_free'
  84. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_malloc'
  85. ../../lib/libgromacs.so.4.0.0: undefined reference to `dswap_'
  86. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlacpy_'
  87. ../../lib/libgromacs.so.4.0.0: undefined reference to `dnrm2_'
  88. ../../lib/libgromacs.so.4.0.0: undefined reference to `dscal_'
  89. ../../lib/libgromacs.so.4.0.0: undefined reference to `slapy2_'
  90. ../../lib/libgromacs.so.4.0.0: undefined reference to `sswap_'
  91. ../../lib/libgromacs.so.4.0.0: undefined reference to `sscal_'
  92. ../../lib/libgromacs.so.4.0.0: undefined reference to `sdot_'
  93. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute'
  94. ../../lib/libgromacs.so.4.0.0: undefined reference to `slascl_'
  95. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgetri_'
  96. ../../lib/libgromacs.so.4.0.0: undefined reference to `slaset_'
  97. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft_c2r'
  98. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft'
  99. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_version'
  100. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlapy2_'
  101. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlaev2_'
  102. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlarnv_'
  103. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlanst_'
  104. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlascl_'
  105. ../../lib/libgromacs.so.4.0.0: undefined reference to `slacpy_'
  106. ../../lib/libgromacs.so.4.0.0: undefined reference to `daxpy_'
  107. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_dft_c2r_2d'
  108. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgetrf_'
  109. ../../lib/libgromacs.so.4.0.0: undefined reference to `dorm2r_'
  110. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft_r2c'
  111. ../../lib/libgromacs.so.4.0.0: undefined reference to `dcopy_'
  112. ../../lib/libgromacs.so.4.0.0: undefined reference to `dger_'
  113. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgeqr2_'
  114. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft'
  115. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft_r2c'
  116. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlasr_'
  117. ../../lib/libgromacs.so.4.0.0: undefined reference to `saxpy_'
  118. ../../lib/libgromacs.so.4.0.0: undefined reference to `slarnv_'
  119. ../../lib/libgromacs.so.4.0.0: undefined reference to `snrm2_'
  120. ../../lib/libgromacs.so.4.0.0: undefined reference to `slartg_'
  121. ../../lib/libgromacs.so.4.0.0: undefined reference to `sgeqr2_'
  122. ../../lib/libgromacs.so.4.0.0: undefined reference to `slaev2_'
  123. ../../lib/libgromacs.so.4.0.0: undefined reference to `slanst_'
  124. ../../lib/libgromacs.so.4.0.0: undefined reference to `ddot_'
  125. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_execute_dft_c2r'
  126. ../../lib/libgromacs.so.4.0.0: undefined reference to `sgemv_'
  127. ../../lib/libgromacs.so.4.0.0: undefined reference to `sorm2r_'
  128. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_many_dft_c2r'
  129. ../../lib/libgromacs.so.4.0.0: undefined reference to `ssyevr_'
  130. ../../lib/libgromacs.so.4.0.0: undefined reference to `dlaset_'
  131. ../../lib/libgromacs.so.4.0.0: undefined reference to `scopy_'
  132. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_destroy_plan'
  133. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_dft_r2c_2d'
  134. ../../lib/libgromacs.so.4.0.0: undefined reference to `dgemv_'
  135. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_plan_guru_dft'
  136. ../../lib/libgromacs.so.4.0.0: undefined reference to `fftwf_cleanup'
  137. clang-8: error: linker command failed with exit code 1 (use -v to see invocation)
  138. make[2]: *** [bin/template] Error 1
  139. make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
  140. make: *** [all] Error 2
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!