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Brahmin.DG loebanr+irula no kangju in right

misnomer001
Sep 11th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. fstatsname: fstatsa8.txt
  11. ## qpAdm version: 1520
  12. seed: 1895873346
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Brahmin.DG
  18. Pakistan_Loebanr_IA
  19. Irula.DG
  20.  
  21. right pops:
  22. Mbuti.DG
  23. EHG
  24. CHG
  25. Russia_Shamanka_Eneolithic.SG
  26. WSHG
  27. PPN
  28. Serbia_IronGates_Mesolithic
  29. Iran_GanjDareh_N
  30. Turkey_N
  31. Tarim_EMBA1
  32. ONG.SG
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 1 dof: 9 chisq: 7.803 tail: 0.554156793 dofdiff: 11 chisqdiff: -7.803 taildiff: 1
  37. B:
  38. scale 1.000
  39. EHG 1.091
  40. CHG 1.110
  41. Russia_Shamanka_Eneolithic.SG -0.374
  42. WSHG 1.019
  43. PPN 1.112
  44. Serbia_IronGates_Mesolithic 0.999
  45. Iran_GanjDareh_N 1.237
  46. Turkey_N 1.131
  47. Tarim_EMBA1 0.879
  48. ONG.SG -0.762
  49. A:
  50. scale 461.793
  51. Pakistan_Loebanr_IA 0.928
  52. Irula.DG -1.068
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 7.803 taildiff: 0.554156793
  58. B:
  59. scale 485.720 445.333
  60. EHG 1.067 -1.123
  61. CHG 1.032 -1.212
  62. Russia_Shamanka_Eneolithic.SG -0.238 0.526
  63. WSHG 1.021 -0.998
  64. PPN 1.187 -1.020
  65. Serbia_IronGates_Mesolithic 0.987 -1.001
  66. Iran_GanjDareh_N 1.345 -1.097
  67. Turkey_N 1.113 -1.153
  68. Tarim_EMBA1 0.882 -0.888
  69. ONG.SG -0.700 0.797
  70. A:
  71. scale 1.414 1.414
  72. Pakistan_Loebanr_IA 1.414 0.000
  73. Irula.DG 0.000 1.414
  74.  
  75.  
  76. best coefficients: 0.535 0.465
  77. totmean: 0.535 0.465
  78. boot mean: 0.535 0.465
  79. std. errors: 0.026 0.026
  80.  
  81. error covariance (* 1,000,000)
  82. 663 -663
  83. -663 663
  84.  
  85.  
  86. summ: Brahmin.DG 2 0.554157 0.535 0.465 663 -663 663
  87.  
  88. fixed pat wt dof chisq tail prob
  89. 00 0 9 7.803 0.554157 0.535 0.465
  90. 01 1 10 338.414 0 1.000 0.000
  91. 10 1 10 280.123 0 0.000 1.000
  92. best pat: 00 0.554157 - -
  93. best pat: 10 2.45219e-54 chi(nested): 272.321 p-value for nested model: 3.54101e-61
  94.  
  95. coeffs: 0.535 0.465
  96.  
  97. ## dscore:: f_4(Base, Fit, Rbase, right2)
  98. ## genstat:: f_4(Base, Fit, right1, right2)
  99.  
  100. details: Pakistan_Loebanr_IA EHG 0.002196 7.602534
  101. details: Irula.DG EHG -0.002521 -7.188478
  102. dscore: EHG f4: 0.000003 Z: 0.010953
  103.  
  104. details: Pakistan_Loebanr_IA CHG 0.002125 7.368111
  105. details: Irula.DG CHG -0.002722 -7.351505
  106. dscore: CHG f4: -0.000129 Z: -0.441040
  107.  
  108. details: Pakistan_Loebanr_IA Russia_Shamanka_Eneolithic.SG -0.000490 -2.089738
  109. details: Irula.DG Russia_Shamanka_Eneolithic.SG 0.001180 3.725751
  110. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000287 Z: 1.174631
  111.  
  112. details: Pakistan_Loebanr_IA WSHG 0.002102 7.171909
  113. details: Irula.DG WSHG -0.002242 -6.170346
  114. dscore: WSHG f4: 0.000083 Z: 0.284197
  115.  
  116. details: Pakistan_Loebanr_IA PPN 0.002443 9.315577
  117. details: Irula.DG PPN -0.002290 -6.619172
  118. dscore: PPN f4: 0.000243 Z: 0.895072
  119.  
  120. details: Pakistan_Loebanr_IA Serbia_IronGates_Mesolithic 0.002031 8.022112
  121. details: Irula.DG Serbia_IronGates_Mesolithic -0.002248 -6.941402
  122. dscore: Serbia_IronGates_Mesolithic f4: 0.000042 Z: 0.162279
  123.  
  124. details: Pakistan_Loebanr_IA Iran_GanjDareh_N 0.002769 11.178855
  125. details: Irula.DG Iran_GanjDareh_N -0.002462 -8.037192
  126. dscore: Iran_GanjDareh_N f4: 0.000337 Z: 1.376919
  127.  
  128. details: Pakistan_Loebanr_IA Turkey_N 0.002292 9.861906
  129. details: Irula.DG Turkey_N -0.002588 -8.820052
  130. dscore: Turkey_N f4: 0.000023 Z: 0.097492
  131.  
  132. details: Pakistan_Loebanr_IA Tarim_EMBA1 0.001816 6.343880
  133. details: Irula.DG Tarim_EMBA1 -0.001993 -5.517277
  134. dscore: Tarim_EMBA1 f4: 0.000045 Z: 0.155760
  135.  
  136. details: Pakistan_Loebanr_IA ONG.SG -0.001441 -5.518368
  137. details: Irula.DG ONG.SG 0.001790 5.274368
  138. dscore: ONG.SG f4: 0.000061 Z: 0.228561
  139.  
  140. gendstat: Mbuti.DG EHG 0.011
  141. gendstat: Mbuti.DG CHG -0.441
  142. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 1.175
  143. gendstat: Mbuti.DG WSHG 0.284
  144. gendstat: Mbuti.DG PPN 0.895
  145. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.162
  146. gendstat: Mbuti.DG Iran_GanjDareh_N 1.377
  147. gendstat: Mbuti.DG Turkey_N 0.097
  148. gendstat: Mbuti.DG Tarim_EMBA1 0.156
  149. gendstat: Mbuti.DG ONG.SG 0.229
  150. gendstat: EHG CHG -0.450
  151. gendstat: EHG Russia_Shamanka_Eneolithic.SG 1.077
  152. gendstat: EHG WSHG 0.307
  153. gendstat: EHG PPN 0.882
  154. gendstat: EHG Serbia_IronGates_Mesolithic 0.183
  155. gendstat: EHG Iran_GanjDareh_N 1.220
  156. gendstat: EHG Turkey_N 0.082
  157. gendstat: EHG Tarim_EMBA1 0.175
  158. gendstat: EHG ONG.SG 0.183
  159. gendstat: CHG Russia_Shamanka_Eneolithic.SG 1.407
  160. gendstat: CHG WSHG 0.659
  161. gendstat: CHG PPN 1.324
  162. gendstat: CHG Serbia_IronGates_Mesolithic 0.642
  163. gendstat: CHG Iran_GanjDareh_N 1.821
  164. gendstat: CHG Turkey_N 0.623
  165. gendstat: CHG Tarim_EMBA1 0.554
  166. gendstat: CHG ONG.SG 0.590
  167. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.750
  168. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.160
  169. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -1.007
  170. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 0.190
  171. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -1.083
  172. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -0.961
  173. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG -0.975
  174. gendstat: WSHG PPN 0.524
  175. gendstat: WSHG Serbia_IronGates_Mesolithic -0.155
  176. gendstat: WSHG Iran_GanjDareh_N 0.863
  177. gendstat: WSHG Turkey_N -0.214
  178. gendstat: WSHG Tarim_EMBA1 -0.163
  179. gendstat: WSHG ONG.SG -0.067
  180. gendstat: PPN Serbia_IronGates_Mesolithic -0.887
  181. gendstat: PPN Iran_GanjDareh_N 0.367
  182. gendstat: PPN Turkey_N -1.208
  183. gendstat: PPN Tarim_EMBA1 -0.663
  184. gendstat: PPN ONG.SG -0.589
  185. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 1.229
  186. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.105
  187. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 0.012
  188. gendstat: Serbia_IronGates_Mesolithic ONG.SG 0.068
  189. gendstat: Iran_GanjDareh_N Turkey_N -1.495
  190. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -1.031
  191. gendstat: Iran_GanjDareh_N ONG.SG -0.970
  192. gendstat: Turkey_N Tarim_EMBA1 0.081
  193. gendstat: Turkey_N ONG.SG 0.140
  194. gendstat: Tarim_EMBA1 ONG.SG 0.054
  195.  
  196. ##end of qpAdm: 1.156 seconds cpu 0.635 Mbytes in use
  197.  
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