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- #!/user/bin/nextflow
- nextflow.enable.dsl=2
- process quast {
- input:
- tuple val(sample_id), path(contig)
- output:
- path "quast_directory_${sample_id}/report.tsv"
- """
- quast.py ${contig} -r reference_genome.fasta -o ${sample_id}_quast -t 4
- """
- }
- workflow {
- contig_ch = Channel.from( ['AH-806-L16', '/home/AH-806-L16_contigs.fasta'] )
- quast(contig_ch)
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