workshop2013

Connectivity Workshop Frankfurt October 2013
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Network-tools Documentation: https://dl.dropbox.com/u/38470419/nt/nt/html/index.html

Download data for workshop
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1. login to server cortex
2. open a terminal
3a. cp -R /mnt/flab/mekman/workshop2013/notebooks/notebooks/sessions ~/
3b. cp /mnt/flab/mekman/workshop2013/toolbox/networktools/networktools.conf ~/networktools.conf
4. cd
5. cd sessions

Various setups
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1. open a terminal
2. cd
3. create this file in your homedirectory ".pymvpa.cfg" and insert the following

[externals]
have running ipython env = no

#Prerequisites/setting up the toolbox

# add these lines to your .bashrc (in /home/<username>)
export PATH=/mnt/flab/mekman/workshop2013/anaconda/bin:$PATH
export PYTHONPATH=/mnt/flab/mekman/workshop2013/toolbox/networktools/:$PYTHONPATH
export PYTHONPATH=/mnt/flab/mekman/workshop2013/tmp/lib/python2.7/site-packages/:$PYTHONPATH

# open a terminal and type
cd
source .bashrc

# then type
ipython profile create default

# open this file and.. (replace <username> with your username)
vim /home/extern/<username>/.ipython/profile_default/ipython_notebook_config.py

# ...replace the line
#c.NotebookApp.browser = u''

with

c.NotebookApp.browser = u'/usr/bin/chromium-browser %s'

# test if everything works: open a terminal, type ipython, followed by from nt import *