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misnomer001

SPGT bustan inPe molaly almost pass

misnomer001
Jan 10th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1636176679
  4.  
  5. left pops:
  6. SPGT
  7. InPe
  8. Bustan_BA
  9. Molaly_LBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. Georgia_Satsurblia.SG
  19. Kostenki14.SG
  20. Russia_Karelia_HG
  21. Serbia_Iron_Gates_HG
  22. Tyumen_HG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25. Nepal_Chokhopani_2700BP.SG
  26.  
  27. 0 SPGT 85
  28. 1 InPe 10
  29. 2 Bustan_BA 10
  30. 3 Molaly_LBA 1
  31. 4 Kazakhstan_Botai.SG 3
  32. 5 Ganj_Dareh_N 7
  33. 6 PPN 8
  34. 7 Anatolia_N 22
  35. 8 Iberia_MN 4
  36. 9 Russia_MA1.SG 1
  37. 10 Georgia_Satsurblia.SG 1
  38. 11 Kostenki14.SG 1
  39. 12 Russia_Karelia_HG 2
  40. 13 Serbia_Iron_Gates_HG 32
  41. 14 Tyumen_HG 2
  42. 15 Onge.DG 2
  43. 16 Russia_Shamanka_EN.SG 10
  44. 17 Nepal_Chokhopani_2700BP.SG 1
  45. jackknife block size: 0.050
  46. snps: 1150478 indivs: 202
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150478
  49. coverage: SPGT 1134632
  50. coverage: InPe 878190
  51. coverage: Bustan_BA 971774
  52. coverage: Molaly_LBA 732706
  53. coverage: Kazakhstan_Botai.SG 1149870
  54. coverage: Ganj_Dareh_N 1029695
  55. coverage: PPN 835499
  56. coverage: Anatolia_N 1134099
  57. coverage: Iberia_MN 967760
  58. coverage: Russia_MA1.SG 805960
  59. coverage: Georgia_Satsurblia.SG 801311
  60. coverage: Kostenki14.SG 1048972
  61. coverage: Russia_Karelia_HG 1010733
  62. coverage: Serbia_Iron_Gates_HG 1139259
  63. coverage: Tyumen_HG 807474
  64. coverage: Onge.DG 1120748
  65. coverage: Russia_Shamanka_EN.SG 1149998
  66. coverage: Nepal_Chokhopani_2700BP.SG 1147419
  67. dof (jackknife): 467.554
  68. numsnps used: 1150478
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 19.736 tail: 0.0491007783 dofdiff: 13 chisqdiff: -19.736 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ganj_Dareh_N 2.501 0.394
  75. PPN 1.287 -0.506
  76. Anatolia_N 1.250 -0.830
  77. Iberia_MN 0.810 -0.619
  78. Russia_MA1.SG 0.340 0.786
  79. Georgia_Satsurblia.SG 1.479 -0.298
  80. Kostenki14.SG 0.514 0.555
  81. Russia_Karelia_HG 0.175 -0.114
  82. Serbia_Iron_Gates_HG 0.083 -0.739
  83. Tyumen_HG 0.168 0.339
  84. Onge.DG 0.252 2.421
  85. Russia_Shamanka_EN.SG -0.299 1.299
  86. Nepal_Chokhopani_2700BP.SG -0.292 1.511
  87. A:
  88. scale 948.794 1527.437
  89. InPe 0.442 1.007
  90. Bustan_BA 1.269 -1.007
  91. Molaly_LBA -1.092 -0.985
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 19.736 taildiff: 0.0491007783
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ganj_Dareh_N 2.507 0.337 -0.421
  100. PPN 1.295 -0.518 0.438
  101. Anatolia_N 1.231 -0.883 0.648
  102. Iberia_MN 0.810 -0.644 0.064
  103. Russia_MA1.SG 0.339 0.791 0.723
  104. Georgia_Satsurblia.SG 1.464 -0.339 -0.426
  105. Kostenki14.SG 0.546 0.551 0.165
  106. Russia_Karelia_HG 0.171 -0.146 0.818
  107. Serbia_Iron_Gates_HG 0.064 -0.713 -0.965
  108. Tyumen_HG 0.190 0.338 0.580
  109. Onge.DG 0.308 2.409 1.553
  110. Russia_Shamanka_EN.SG -0.273 1.296 -2.660
  111. Nepal_Chokhopani_2700BP.SG -0.264 1.501 0.223
  112. A:
  113. scale 951.800 1584.245 8695.995
  114. InPe 0.508 1.038 -0.696
  115. Bustan_BA 1.268 -1.079 -0.308
  116. Molaly_LBA -1.065 -0.871 -1.556
  117.  
  118.  
  119. best coefficients: 0.496 0.140 0.364
  120. Jackknife mean: 0.496236723 0.140624346 0.363138931
  121. std. errors: 0.032 0.027 0.024
  122.  
  123. error covariance (* 1000000)
  124. 1040 -602 -439
  125. -602 734 -132
  126. -439 -132 571
  127.  
  128.  
  129. summ: SPGT 3 0.049101 0.496 0.141 0.363 1040 -602 -439 734 -132 571
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 19.736 0.0491008 0.496 0.140 0.364
  133. 001 1 12 232.636 0 0.929 0.071 -0.000
  134. 010 1 12 42.673 2.56502e-05 0.600 0.000 0.400
  135. 100 1 12 145.456 4.72429e-25 0.000 0.311 0.689
  136. 011 2 13 236.550 0 1.000 0.000 -0.000
  137. 101 2 13 845.635 0 0.000 1.000 -0.000
  138. 110 2 13 186.781 0 0.000 0.000 1.000
  139. best pat: 000 0.0491008 - -
  140. best pat: 010 2.56502e-05 chi(nested): 22.937 p-value for nested model: 1.67402e-06
  141. best pat: 110 6.98997e-33 chi(nested): 144.109 p-value for nested model: 3.36385e-33
  142.  
  143. coeffs: 0.496 0.140 0.364
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: InPe Ganj_Dareh_N 0.001603 8.935511
  149. details: Bustan_BA Ganj_Dareh_N 0.003129 16.418578
  150. details: Molaly_LBA Ganj_Dareh_N -0.002977 -9.440595
  151. dscore: Ganj_Dareh_N f4: 0.000151 Z: 1.047743
  152.  
  153. details: InPe PPN 0.000330 1.675854
  154. details: Bustan_BA PPN 0.002072 11.192831
  155. details: Molaly_LBA PPN -0.001321 -3.850183
  156. dscore: PPN f4: -0.000027 Z: -0.167457
  157.  
  158. details: InPe Anatolia_N 0.000043 0.283914
  159. details: Bustan_BA Anatolia_N 0.002227 13.832329
  160. details: Molaly_LBA Anatolia_N -0.001068 -3.500341
  161. dscore: Anatolia_N f4: -0.000054 Z: -0.410137
  162.  
  163. details: InPe Iberia_MN 0.000013 0.081174
  164. details: Bustan_BA Iberia_MN 0.001533 8.397392
  165. details: Molaly_LBA Iberia_MN -0.000631 -1.924602
  166. dscore: Iberia_MN f4: -0.000008 Z: -0.055727
  167.  
  168. details: InPe Russia_MA1.SG 0.000629 3.192794
  169. details: Bustan_BA Russia_MA1.SG -0.000128 -0.650202
  170. details: Molaly_LBA Russia_MA1.SG -0.001025 -3.257974
  171. dscore: Russia_MA1.SG f4: -0.000079 Z: -0.492605
  172.  
  173. details: InPe Georgia_Satsurblia.SG 0.000622 2.805209
  174. details: Bustan_BA Georgia_Satsurblia.SG 0.002220 9.835002
  175. details: Molaly_LBA Georgia_Satsurblia.SG -0.001401 -4.029911
  176. dscore: Georgia_Satsurblia.SG f4: 0.000110 Z: 0.628204
  177.  
  178. details: InPe Kostenki14.SG 0.000649 3.104729
  179. details: Bustan_BA Kostenki14.SG 0.000361 1.668343
  180. details: Molaly_LBA Kostenki14.SG -0.001017 -2.873277
  181. dscore: Kostenki14.SG f4: 0.000002 Z: 0.013230
  182.  
  183. details: InPe Russia_Karelia_HG -0.000076 -0.423820
  184. details: Bustan_BA Russia_Karelia_HG 0.000297 1.590809
  185. details: Molaly_LBA Russia_Karelia_HG -0.000316 -1.034549
  186. dscore: Russia_Karelia_HG f4: -0.000111 Z: -0.758046
  187.  
  188. details: InPe Serbia_Iron_Gates_HG -0.000351 -2.440173
  189. details: Bustan_BA Serbia_Iron_Gates_HG 0.000608 3.898268
  190. details: Molaly_LBA Serbia_Iron_Gates_HG 0.000408 1.463500
  191. dscore: Serbia_Iron_Gates_HG f4: 0.000060 Z: 0.470713
  192.  
  193. details: InPe Tyumen_HG 0.000271 1.466389
  194. details: Bustan_BA Tyumen_HG 0.000003 0.016501
  195. details: Molaly_LBA Tyumen_HG -0.000586 -1.762884
  196. dscore: Tyumen_HG f4: -0.000078 Z: -0.517332
  197.  
  198. details: InPe Onge.DG 0.001632 9.082177
  199. details: Bustan_BA Onge.DG -0.001287 -6.735296
  200. details: Molaly_LBA Onge.DG -0.002012 -6.037490
  201. dscore: Onge.DG f4: -0.000103 Z: -0.679625
  202.  
  203. details: InPe Russia_Shamanka_EN.SG 0.000932 6.158610
  204. details: Bustan_BA Russia_Shamanka_EN.SG -0.001146 -7.665410
  205. details: Molaly_LBA Russia_Shamanka_EN.SG 0.000046 0.144661
  206. dscore: Russia_Shamanka_EN.SG f4: 0.000318 Z: 2.308407
  207.  
  208. details: InPe Nepal_Chokhopani_2700BP.SG 0.000857 4.624475
  209. details: Bustan_BA Nepal_Chokhopani_2700BP.SG -0.001374 -6.716756
  210. details: Molaly_LBA Nepal_Chokhopani_2700BP.SG -0.000579 -1.558234
  211. dscore: Nepal_Chokhopani_2700BP.SG f4: 0.000022 Z: 0.132936
  212.  
  213. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 1.048
  214. gendstat: Kazakhstan_Botai.SG PPN -0.167
  215. gendstat: Kazakhstan_Botai.SG Anatolia_N -0.410
  216. gendstat: Kazakhstan_Botai.SG Iberia_MN -0.056
  217. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.493
  218. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.628
  219. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 0.013
  220. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG -0.758
  221. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 0.471
  222. gendstat: Kazakhstan_Botai.SG Tyumen_HG -0.517
  223. gendstat: Kazakhstan_Botai.SG Onge.DG -0.680
  224. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 2.308
  225. gendstat: Kazakhstan_Botai.SG Nepal_Chokhopani_2700BP.SG 0.133
  226. gendstat: Ganj_Dareh_N PPN -1.154
  227. gendstat: Ganj_Dareh_N Anatolia_N -1.651
  228. gendstat: Ganj_Dareh_N Iberia_MN -1.125
  229. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.214
  230. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.230
  231. gendstat: Ganj_Dareh_N Kostenki14.SG -0.798
  232. gendstat: Ganj_Dareh_N Russia_Karelia_HG -1.510
  233. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.638
  234. gendstat: Ganj_Dareh_N Tyumen_HG -1.255
  235. gendstat: Ganj_Dareh_N Onge.DG -1.557
  236. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.039
  237. gendstat: Ganj_Dareh_N Nepal_Chokhopani_2700BP.SG -0.704
  238. gendstat: PPN Anatolia_N -0.257
  239. gendstat: PPN Iberia_MN 0.143
  240. gendstat: PPN Russia_MA1.SG -0.263
  241. gendstat: PPN Georgia_Satsurblia.SG 0.702
  242. gendstat: PPN Kostenki14.SG 0.155
  243. gendstat: PPN Russia_Karelia_HG -0.470
  244. gendstat: PPN Serbia_Iron_Gates_HG 0.643
  245. gendstat: PPN Tyumen_HG -0.262
  246. gendstat: PPN Onge.DG -0.435
  247. gendstat: PPN Russia_Shamanka_EN.SG 2.060
  248. gendstat: PPN Nepal_Chokhopani_2700BP.SG 0.254
  249. gendstat: Anatolia_N Iberia_MN 0.499
  250. gendstat: Anatolia_N Russia_MA1.SG -0.138
  251. gendstat: Anatolia_N Georgia_Satsurblia.SG 1.011
  252. gendstat: Anatolia_N Kostenki14.SG 0.354
  253. gendstat: Anatolia_N Russia_Karelia_HG -0.357
  254. gendstat: Anatolia_N Serbia_Iron_Gates_HG 1.140
  255. gendstat: Anatolia_N Tyumen_HG -0.133
  256. gendstat: Anatolia_N Onge.DG -0.320
  257. gendstat: Anatolia_N Russia_Shamanka_EN.SG 2.558
  258. gendstat: Anatolia_N Nepal_Chokhopani_2700BP.SG 0.453
  259. gendstat: Iberia_MN Russia_MA1.SG -0.379
  260. gendstat: Iberia_MN Georgia_Satsurblia.SG 0.651
  261. gendstat: Iberia_MN Kostenki14.SG 0.057
  262. gendstat: Iberia_MN Russia_Karelia_HG -0.612
  263. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.588
  264. gendstat: Iberia_MN Tyumen_HG -0.369
  265. gendstat: Iberia_MN Onge.DG -0.581
  266. gendstat: Iberia_MN Russia_Shamanka_EN.SG 2.068
  267. gendstat: Iberia_MN Nepal_Chokhopani_2700BP.SG 0.164
  268. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.859
  269. gendstat: Russia_MA1.SG Kostenki14.SG 0.406
  270. gendstat: Russia_MA1.SG Russia_Karelia_HG -0.164
  271. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 0.820
  272. gendstat: Russia_MA1.SG Tyumen_HG 0.003
  273. gendstat: Russia_MA1.SG Onge.DG -0.126
  274. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 2.063
  275. gendstat: Russia_MA1.SG Nepal_Chokhopani_2700BP.SG 0.484
  276. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.517
  277. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG -1.089
  278. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG -0.285
  279. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.882
  280. gendstat: Georgia_Satsurblia.SG Onge.DG -1.081
  281. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 1.103
  282. gendstat: Georgia_Satsurblia.SG Nepal_Chokhopani_2700BP.SG -0.418
  283. gendstat: Kostenki14.SG Russia_Karelia_HG -0.611
  284. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.371
  285. gendstat: Kostenki14.SG Tyumen_HG -0.401
  286. gendstat: Kostenki14.SG Onge.DG -0.565
  287. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 1.757
  288. gendstat: Kostenki14.SG Nepal_Chokhopani_2700BP.SG 0.097
  289. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.213
  290. gendstat: Russia_Karelia_HG Tyumen_HG 0.171
  291. gendstat: Russia_Karelia_HG Onge.DG 0.043
  292. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG 2.467
  293. gendstat: Russia_Karelia_HG Nepal_Chokhopani_2700BP.SG 0.665
  294. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -0.797
  295. gendstat: Serbia_Iron_Gates_HG Onge.DG -1.041
  296. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG 1.729
  297. gendstat: Serbia_Iron_Gates_HG Nepal_Chokhopani_2700BP.SG -0.214
  298. gendstat: Tyumen_HG Onge.DG -0.132
  299. gendstat: Tyumen_HG Russia_Shamanka_EN.SG 2.144
  300. gendstat: Tyumen_HG Nepal_Chokhopani_2700BP.SG 0.475
  301. gendstat: Onge.DG Russia_Shamanka_EN.SG 3.121
  302. gendstat: Onge.DG Nepal_Chokhopani_2700BP.SG 0.762
  303. gendstat: Russia_Shamanka_EN.SG Nepal_Chokhopani_2700BP.SG -2.263
  304.  
  305. ## end of run
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