Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- MT 200610-1 100 2757
- MT 200610-10 100 6753
- MT 200610-100 100 15173
- chrMT 2756 2757 200610-1
- chrMT 6752 6753 200610-10
- chrMT 15172 15173 200610-100
- awk 'BEGIN{FS=="t";OFS=="t"}{print "chr"$1,$4-1,$4}' test_ace_geno1.map
- chrMT 2756 2757
- chrMT 6752 6753
- chrMT 15172 15173
- awk 'BEGIN{FS=="t";OFS=="t"}{print "chr"$1,$4-1,$4,$2}' test_ace_geno1.map
- 200610-16 2757
- 200610-10 6753
- 200610-100 15173
- MT^I200610-1^I100^I2757$
- MT^I200610-10^I100^I6753$
- MT^I200610-100^I100^I15173$
- $ cat -e ip.txt
- MT 200610-1 100 2757^M$
- MT 200610-10 100 6753 ^M$
- MT 200610-100 100 15173^M$
- $ awk 'BEGIN{FS=="t";OFS=="t"}{print "chr"$1,$4-1,$4}' ip.txt
- chrMT 2756 2757
- chrMT 6752 6753
- chrMT 15172 15173
- $ awk 'BEGIN{FS=="t";OFS=="t"}{print "chr"$1,$4-1,$4,$2}' ip.txt
- 200610-16 2757
- chrMT 6752 6753 200610-10
- 200610-100 15173
- $ perl -lane 'print "chr$F[0]t", $F[3]-1, "t$F[3]t$F[1]"' ip.txt
- chrMT 2756 2757 200610-1
- chrMT 6752 6753 200610-10
- chrMT 15172 15173 200610-100
- $ perl -i -pe 's|rn|n|' ip.txt
- $ cat -e ip.txt
- MT 200610-1 100 2757$
- MT 200610-10 100 6753 $
- MT 200610-100 100 15173$
- $ awk -v OFS="t" '{print "chr"$1,$4-1,$4,$2}' ip.txt
- chrMT 2756 2757 200610-1
- chrMT 6752 6753 200610-10
- chrMT 15172 15173 200610-100
- gawk -v RS='rn' -v OFS="t" '{print "chr"$1,$4-1,$4,$2}' ip.txt
- awk '{print "chr" $1, ($NF - 1), $NF, $2}' file.txt
- % awk '{print "chr" $1, ($NF - 1), $NF, $2}' file.txt
- chrMT 2756 2757 200610-1
- chrMT 6752 6753 200610-10
- chrMT 15172 15173 200610-100
Add Comment
Please, Sign In to add comment