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misnomer001

ArslanTepe_EBA

misnomer001
Feb 18th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: anatolia
  5. indivname: anatolia.ind
  6. snpname: anatolia.snp
  7. genotypename: anatolia.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1775566384
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.7019
  18.  
  19. left pops:
  20. Turkey_Arslantepe_EBA
  21. Turkey_Arslantepe_LateC
  22. Armenia_EBA_KuraAraxes
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. EHG
  28. CHG
  29. England_Mesolithic
  30. Morocco_Iberomaurusian
  31. IVC
  32. WSHG
  33. Tarim_EMBA1
  34. Mongolia_North_N
  35. Turkey_Epipaleolithic
  36. Iran_GanjDareh_N
  37. PPN
  38. Russia_Steppe_Eneolithic
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 1 dof: 12 chisq: 21.075 tail: 0.0492915999 dofdiff: 14 chisqdiff: -21.075 taildiff: 1
  43. B:
  44. scale 1.000
  45. ONG.SG 0.091
  46. EHG 0.219
  47. CHG 0.918
  48. England_Mesolithic -0.120
  49. Morocco_Iberomaurusian -0.845
  50. IVC 0.603
  51. WSHG 0.814
  52. Tarim_EMBA1 1.165
  53. Mongolia_North_N 0.104
  54. Turkey_Epipaleolithic -1.967
  55. Iran_GanjDareh_N 0.477
  56. PPN -1.997
  57. Russia_Steppe_Eneolithic 0.947
  58. A:
  59. scale 341.116
  60. Turkey_Arslantepe_LateC -0.175
  61. Armenia_EBA_KuraAraxes 1.403
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 21.075 taildiff: 0.0492915999
  67. B:
  68. scale 683.102 231.292
  69. ONG.SG 1.084 0.413
  70. EHG 1.196 0.617
  71. CHG -0.256 0.855
  72. England_Mesolithic 1.373 0.261
  73. Morocco_Iberomaurusian 1.230 -0.521
  74. IVC 0.794 0.932
  75. WSHG 0.661 1.033
  76. Tarim_EMBA1 0.792 1.432
  77. Mongolia_North_N 0.900 0.342
  78. Turkey_Epipaleolithic 1.912 -1.520
  79. Iran_GanjDareh_N 0.432 0.643
  80. PPN 0.765 -1.880
  81. Russia_Steppe_Eneolithic 0.037 1.006
  82. A:
  83. scale 1.414 1.414
  84. Turkey_Arslantepe_LateC 1.414 0.000
  85. Armenia_EBA_KuraAraxes 0.000 1.414
  86.  
  87.  
  88. best coefficients: 0.889 0.111
  89. totmean: 0.889 0.111
  90. boot mean: 0.891 0.109
  91. std. errors: 0.053 0.053
  92.  
  93. error covariance (* 1,000,000)
  94. 2824 -2824
  95. -2824 2824
  96.  
  97.  
  98. summ: Turkey_Arslantepe_EBA 2 0.049292 0.891 0.109 2824 -2824 2824
  99.  
  100. fixed pat wt dof chisq tail prob
  101. 00 0 12 21.075 0.0492916 0.889 0.111
  102. 01 1 13 26.315 0.0154202 1.000 0.000
  103. 10 1 13 182.844 0 0.000 1.000
  104. best pat: 00 0.0492916 - -
  105. best pat: 01 0.0154202 chi(nested): 5.240 p-value for nested model: 0.0220788
  106.  
  107. coeffs: 0.889 0.111
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: Turkey_Arslantepe_LateC ONG.SG 0.001586 2.306943
  113. details: Armenia_EBA_KuraAraxes ONG.SG 0.001784 1.636754
  114. dscore: ONG.SG f4: 0.001608 Z: 2.376283
  115.  
  116. details: Turkey_Arslantepe_LateC EHG 0.001750 2.257583
  117. details: Armenia_EBA_KuraAraxes EHG 0.002667 2.141336
  118. dscore: EHG f4: 0.001852 Z: 2.429463
  119.  
  120. details: Turkey_Arslantepe_LateC CHG -0.000375 -0.464365
  121. details: Armenia_EBA_KuraAraxes CHG 0.003699 2.892354
  122. dscore: CHG f4: 0.000075 Z: 0.094585
  123.  
  124. details: Turkey_Arslantepe_LateC England_Mesolithic 0.002009 2.359393
  125. details: Armenia_EBA_KuraAraxes England_Mesolithic 0.001128 0.814368
  126. dscore: England_Mesolithic f4: 0.001912 Z: 2.279552
  127.  
  128. details: Turkey_Arslantepe_LateC Morocco_Iberomaurusian 0.001800 2.686496
  129. details: Armenia_EBA_KuraAraxes Morocco_Iberomaurusian -0.002252 -2.400302
  130. dscore: Morocco_Iberomaurusian f4: 0.001352 Z: 2.073356
  131.  
  132. details: Turkey_Arslantepe_LateC IVC 0.001162 1.762082
  133. details: Armenia_EBA_KuraAraxes IVC 0.004030 3.826399
  134. dscore: IVC f4: 0.001479 Z: 2.253912
  135.  
  136. details: Turkey_Arslantepe_LateC WSHG 0.000967 1.229133
  137. details: Armenia_EBA_KuraAraxes WSHG 0.004467 3.594484
  138. dscore: WSHG f4: 0.001354 Z: 1.751877
  139.  
  140. details: Turkey_Arslantepe_LateC Tarim_EMBA1 0.001160 1.523904
  141. details: Armenia_EBA_KuraAraxes Tarim_EMBA1 0.006193 5.124095
  142. dscore: Tarim_EMBA1 f4: 0.001717 Z: 2.298283
  143.  
  144. details: Turkey_Arslantepe_LateC Mongolia_North_N 0.001318 2.002340
  145. details: Armenia_EBA_KuraAraxes Mongolia_North_N 0.001480 1.420358
  146. dscore: Mongolia_North_N f4: 0.001336 Z: 2.073806
  147.  
  148. details: Turkey_Arslantepe_LateC Turkey_Epipaleolithic 0.002799 2.979240
  149. details: Armenia_EBA_KuraAraxes Turkey_Epipaleolithic -0.006574 -4.423375
  150. dscore: Turkey_Epipaleolithic f4: 0.001763 Z: 1.899450
  151.  
  152. details: Turkey_Arslantepe_LateC Iran_GanjDareh_N 0.000632 0.982723
  153. details: Armenia_EBA_KuraAraxes Iran_GanjDareh_N 0.002780 2.628436
  154. dscore: Iran_GanjDareh_N f4: 0.000869 Z: 1.360888
  155.  
  156. details: Turkey_Arslantepe_LateC PPN 0.001120 1.549803
  157. details: Armenia_EBA_KuraAraxes PPN -0.008130 -7.109555
  158. dscore: PPN f4: 0.000097 Z: 0.135946
  159.  
  160. details: Turkey_Arslantepe_LateC Russia_Steppe_Eneolithic 0.000054 0.075963
  161. details: Armenia_EBA_KuraAraxes Russia_Steppe_Eneolithic 0.004350 3.912353
  162. dscore: Russia_Steppe_Eneolithic f4: 0.000529 Z: 0.758426
  163.  
  164. gendstat: Mbuti.DG ONG.SG 2.376
  165. gendstat: Mbuti.DG EHG 2.429
  166. gendstat: Mbuti.DG CHG 0.095
  167. gendstat: Mbuti.DG England_Mesolithic 2.280
  168. gendstat: Mbuti.DG Morocco_Iberomaurusian 2.073
  169. gendstat: Mbuti.DG IVC 2.254
  170. gendstat: Mbuti.DG WSHG 1.752
  171. gendstat: Mbuti.DG Tarim_EMBA1 2.298
  172. gendstat: Mbuti.DG Mongolia_North_N 2.074
  173. gendstat: Mbuti.DG Turkey_Epipaleolithic 1.899
  174. gendstat: Mbuti.DG Iran_GanjDareh_N 1.361
  175. gendstat: Mbuti.DG PPN 0.136
  176. gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.758
  177. gendstat: ONG.SG EHG 0.313
  178. gendstat: ONG.SG CHG -1.825
  179. gendstat: ONG.SG England_Mesolithic 0.347
  180. gendstat: ONG.SG Morocco_Iberomaurusian -0.318
  181. gendstat: ONG.SG IVC -0.195
  182. gendstat: ONG.SG WSHG -0.321
  183. gendstat: ONG.SG Tarim_EMBA1 0.146
  184. gendstat: ONG.SG Mongolia_North_N -0.436
  185. gendstat: ONG.SG Turkey_Epipaleolithic 0.152
  186. gendstat: ONG.SG Iran_GanjDareh_N -1.024
  187. gendstat: ONG.SG PPN -1.855
  188. gendstat: ONG.SG Russia_Steppe_Eneolithic -1.433
  189. gendstat: EHG CHG -2.124
  190. gendstat: EHG England_Mesolithic 0.071
  191. gendstat: EHG Morocco_Iberomaurusian -0.629
  192. gendstat: EHG IVC -0.514
  193. gendstat: EHG WSHG -0.681
  194. gendstat: EHG Tarim_EMBA1 -0.199
  195. gendstat: EHG Mongolia_North_N -0.705
  196. gendstat: EHG Turkey_Epipaleolithic -0.092
  197. gendstat: EHG Iran_GanjDareh_N -1.319
  198. gendstat: EHG PPN -2.174
  199. gendstat: EHG Russia_Steppe_Eneolithic -1.944
  200. gendstat: CHG England_Mesolithic 1.955
  201. gendstat: CHG Morocco_Iberomaurusian 1.433
  202. gendstat: CHG IVC 1.891
  203. gendstat: CHG WSHG 1.465
  204. gendstat: CHG Tarim_EMBA1 1.981
  205. gendstat: CHG Mongolia_North_N 1.537
  206. gendstat: CHG Turkey_Epipaleolithic 1.699
  207. gendstat: CHG Iran_GanjDareh_N 1.052
  208. gendstat: CHG PPN 0.025
  209. gendstat: CHG Russia_Steppe_Eneolithic 0.611
  210. gendstat: England_Mesolithic Morocco_Iberomaurusian -0.647
  211. gendstat: England_Mesolithic IVC -0.524
  212. gendstat: England_Mesolithic WSHG -0.617
  213. gendstat: England_Mesolithic Tarim_EMBA1 -0.219
  214. gendstat: England_Mesolithic Mongolia_North_N -0.676
  215. gendstat: England_Mesolithic Turkey_Epipaleolithic -0.146
  216. gendstat: England_Mesolithic Iran_GanjDareh_N -1.239
  217. gendstat: England_Mesolithic PPN -2.051
  218. gendstat: England_Mesolithic Russia_Steppe_Eneolithic -1.791
  219. gendstat: Morocco_Iberomaurusian IVC 0.174
  220. gendstat: Morocco_Iberomaurusian WSHG 0.003
  221. gendstat: Morocco_Iberomaurusian Tarim_EMBA1 0.439
  222. gendstat: Morocco_Iberomaurusian Mongolia_North_N -0.021
  223. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic 0.445
  224. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.648
  225. gendstat: Morocco_Iberomaurusian PPN -1.748
  226. gendstat: Morocco_Iberomaurusian Russia_Steppe_Eneolithic -1.076
  227. gendstat: IVC WSHG -0.173
  228. gendstat: IVC Tarim_EMBA1 0.348
  229. gendstat: IVC Mongolia_North_N -0.230
  230. gendstat: IVC Turkey_Epipaleolithic 0.297
  231. gendstat: IVC Iran_GanjDareh_N -1.078
  232. gendstat: IVC PPN -1.855
  233. gendstat: IVC Russia_Steppe_Eneolithic -1.483
  234. gendstat: WSHG Tarim_EMBA1 0.567
  235. gendstat: WSHG Mongolia_North_N -0.024
  236. gendstat: WSHG Turkey_Epipaleolithic 0.401
  237. gendstat: WSHG Iran_GanjDareh_N -0.640
  238. gendstat: WSHG PPN -1.429
  239. gendstat: WSHG Russia_Steppe_Eneolithic -1.213
  240. gendstat: Tarim_EMBA1 Mongolia_North_N -0.555
  241. gendstat: Tarim_EMBA1 Turkey_Epipaleolithic 0.045
  242. gendstat: Tarim_EMBA1 Iran_GanjDareh_N -1.169
  243. gendstat: Tarim_EMBA1 PPN -1.956
  244. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic -1.860
  245. gendstat: Mongolia_North_N Turkey_Epipaleolithic 0.453
  246. gendstat: Mongolia_North_N Iran_GanjDareh_N -0.722
  247. gendstat: Mongolia_North_N PPN -1.671
  248. gendstat: Mongolia_North_N Russia_Steppe_Eneolithic -1.150
  249. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N -0.954
  250. gendstat: Turkey_Epipaleolithic PPN -1.894
  251. gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -1.323
  252. gendstat: Iran_GanjDareh_N PPN -1.034
  253. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.521
  254. gendstat: PPN Russia_Steppe_Eneolithic 0.569
  255.  
  256. removing /tmp/fsx.7019
  257. ##end of qpAdm: 1.940 seconds cpu 0.778 Mbytes in use
  258.  
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