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misnomer001

aligrama_IA krasno chokhopani success

misnomer001
Jan 12th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1851293728
  4.  
  5. left pops:
  6. Aligrama2_IA
  7. InPe
  8. Nepal_Chokhopani_2700BP.SG
  9. Krasnoyarsk_MLBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. CHG
  19. Kostenki14.SG
  20. EEHG
  21. WEHG
  22. WSHG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25. Ethiopia_4500BP.SG
  26.  
  27. 0 Aligrama2_IA 3
  28. 1 InPe 10
  29. 2 Nepal_Chokhopani_2700BP.SG 1
  30. 3 Krasnoyarsk_MLBA 16
  31. 4 Kazakhstan_Botai.SG 3
  32. 5 Ganj_Dareh_N 7
  33. 6 PPN 8
  34. 7 Anatolia_N 22
  35. 8 Iberia_MN 4
  36. 9 Russia_MA1.SG 1
  37. 10 CHG 2
  38. 11 Kostenki14.SG 1
  39. 12 EEHG 4
  40. 13 WEHG 36
  41. 14 WSHG 3
  42. 15 Onge.DG 2
  43. 16 Russia_Shamanka_EN.SG 10
  44. 17 Ethiopia_4500BP.SG 1
  45. jackknife block size: 0.050
  46. snps: 1150477 indivs: 134
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150477
  49. coverage: Aligrama2_IA 995603
  50. coverage: InPe 878190
  51. coverage: Nepal_Chokhopani_2700BP.SG 1147419
  52. coverage: Krasnoyarsk_MLBA 1082457
  53. coverage: Kazakhstan_Botai.SG 1149870
  54. coverage: Ganj_Dareh_N 1029695
  55. coverage: PPN 835499
  56. coverage: Anatolia_N 1134099
  57. coverage: Iberia_MN 967760
  58. coverage: Russia_MA1.SG 805960
  59. coverage: CHG 1149558
  60. coverage: Kostenki14.SG 1048972
  61. coverage: EEHG 1029995
  62. coverage: WEHG 1141246
  63. coverage: WSHG 858019
  64. coverage: Onge.DG 1120748
  65. coverage: Russia_Shamanka_EN.SG 1149998
  66. coverage: Ethiopia_4500BP.SG 1149598
  67. dof (jackknife): 468.548
  68. numsnps used: 1150477
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 16.383 tail: 0.127509282 dofdiff: 13 chisqdiff: -16.383 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ganj_Dareh_N 0.720 2.381
  75. PPN 0.687 0.398
  76. Anatolia_N 0.867 0.098
  77. Iberia_MN 0.856 -0.238
  78. Russia_MA1.SG 0.185 0.431
  79. CHG 0.775 1.250
  80. Kostenki14.SG 0.176 0.614
  81. EEHG 0.752 -0.507
  82. WEHG 0.907 -0.969
  83. WSHG 0.309 0.124
  84. Onge.DG -1.394 1.386
  85. Russia_Shamanka_EN.SG -2.503 0.171
  86. Ethiopia_4500BP.SG -0.406 1.348
  87. A:
  88. scale 325.599 649.758
  89. InPe 0.095 0.252
  90. Nepal_Chokhopani_2700BP.SG -1.622 -0.790
  91. Krasnoyarsk_MLBA 0.600 -1.521
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 16.383 taildiff: 0.127509282
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ganj_Dareh_N 0.813 2.329 -0.342
  100. PPN 0.711 0.363 0.471
  101. Anatolia_N 0.879 0.044 -0.839
  102. Iberia_MN 0.867 -0.276 1.852
  103. Russia_MA1.SG 0.202 0.415 0.489
  104. CHG 0.826 1.197 -0.105
  105. Kostenki14.SG 0.195 0.599 -0.491
  106. EEHG 0.736 -0.544 0.109
  107. WEHG 0.873 -1.020 -0.478
  108. WSHG 0.323 0.101 0.730
  109. Onge.DG -1.345 1.452 -0.003
  110. Russia_Shamanka_EN.SG -2.490 0.302 2.660
  111. Ethiopia_4500BP.SG -0.361 1.364 -0.432
  112. A:
  113. scale 329.953 666.091 6667.075
  114. InPe 0.152 0.283 1.130
  115. Nepal_Chokhopani_2700BP.SG -1.619 -0.649 1.121
  116. Krasnoyarsk_MLBA 0.595 -1.581 0.683
  117.  
  118.  
  119. best coefficients: 0.824 0.083 0.093
  120. Jackknife mean: 0.823375434 0.083116836 0.093507729
  121. std. errors: 0.026 0.011 0.019
  122.  
  123. error covariance (* 1000000)
  124. 674 -216 -458
  125. -216 123 92
  126. -458 92 366
  127.  
  128.  
  129. summ: Aligrama2_IA 3 0.127509 0.823 0.083 0.094 674 -216 -458 123 92 366
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 16.383 0.127509 0.824 0.083 0.093
  133. 001 1 12 39.288 9.43345e-05 0.942 0.058 -0.000
  134. 010 1 12 67.060 1.13156e-09 0.981 -0.000 0.019
  135. 100 1 12 940.830 0 0.000 0.378 0.622
  136. 011 2 13 67.490 2.31854e-09 1.000 -0.000 -0.000
  137. 101 2 13 2421.642 0 0.000 1.000 -0.000
  138. 110 2 13 2311.970 0 0.000 -0.000 1.000
  139. best pat: 000 0.127509 - -
  140. best pat: 001 9.43345e-05 chi(nested): 22.905 p-value for nested model: 1.70186e-06
  141. best pat: 011 2.31854e-09 chi(nested): 28.202 p-value for nested model: 1.09299e-07
  142.  
  143. coeffs: 0.824 0.083 0.093
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: InPe Ganj_Dareh_N 0.001581 6.242989
  149. details: Nepal_Chokhopani_2700BP.SG Ganj_Dareh_N -0.006199 -16.020046
  150. details: Krasnoyarsk_MLBA Ganj_Dareh_N -0.003948 -15.287588
  151. dscore: Ganj_Dareh_N f4: 0.000419 Z: 1.771282
  152.  
  153. details: InPe PPN 0.000889 3.501336
  154. details: Nepal_Chokhopani_2700BP.SG PPN -0.003641 -10.114444
  155. details: Krasnoyarsk_MLBA PPN 0.000683 2.592842
  156. dscore: PPN f4: 0.000494 Z: 2.112975
  157.  
  158. details: InPe Anatolia_N 0.000677 3.168407
  159. details: Nepal_Chokhopani_2700BP.SG Anatolia_N -0.004305 -13.000036
  160. details: Krasnoyarsk_MLBA Anatolia_N 0.001633 7.017668
  161. dscore: Anatolia_N f4: 0.000353 Z: 1.781388
  162.  
  163. details: InPe Iberia_MN 0.000922 3.909677
  164. details: Nepal_Chokhopani_2700BP.SG Iberia_MN -0.003555 -9.909789
  165. details: Krasnoyarsk_MLBA Iberia_MN 0.002582 10.408712
  166. dscore: Iberia_MN f4: 0.000706 Z: 3.213430
  167.  
  168. details: InPe Russia_MA1.SG 0.000611 2.396636
  169. details: Nepal_Chokhopani_2700BP.SG Russia_MA1.SG -0.001157 -3.057281
  170. details: Krasnoyarsk_MLBA Russia_MA1.SG -0.000384 -1.532350
  171. dscore: Russia_MA1.SG f4: 0.000371 Z: 1.569080
  172.  
  173. details: InPe CHG 0.001149 4.270354
  174. details: Nepal_Chokhopani_2700BP.SG CHG -0.005171 -12.422160
  175. details: Krasnoyarsk_MLBA CHG -0.001209 -4.467306
  176. dscore: CHG f4: 0.000405 Z: 1.612124
  177.  
  178. details: InPe Kostenki14.SG 0.000493 1.772771
  179. details: Nepal_Chokhopani_2700BP.SG Kostenki14.SG -0.001619 -3.512197
  180. details: Krasnoyarsk_MLBA Kostenki14.SG -0.001012 -3.520050
  181. dscore: Kostenki14.SG f4: 0.000178 Z: 0.683551
  182.  
  183. details: InPe EEHG 0.000350 1.635987
  184. details: Nepal_Chokhopani_2700BP.SG EEHG -0.003010 -8.306337
  185. details: Krasnoyarsk_MLBA EEHG 0.002731 12.493455
  186. dscore: EEHG f4: 0.000294 Z: 1.480656
  187.  
  188. details: InPe WEHG 0.000222 1.133098
  189. details: Nepal_Chokhopani_2700BP.SG WEHG -0.003203 -9.621136
  190. details: Krasnoyarsk_MLBA WEHG 0.004142 18.835375
  191. dscore: WEHG f4: 0.000304 Z: 1.666594
  192.  
  193. details: InPe WSHG 0.000595 2.705721
  194. details: Nepal_Chokhopani_2700BP.SG WSHG -0.001453 -4.434710
  195. details: Krasnoyarsk_MLBA WSHG 0.000595 2.828661
  196. dscore: WSHG f4: 0.000425 Z: 2.081680
  197.  
  198. details: InPe Onge.DG 0.000340 1.322892
  199. details: Nepal_Chokhopani_2700BP.SG Onge.DG 0.005453 11.990906
  200. details: Krasnoyarsk_MLBA Onge.DG -0.005680 -20.876340
  201. dscore: Onge.DG f4: 0.000202 Z: 0.833671
  202.  
  203. details: InPe Russia_Shamanka_EN.SG -0.000231 -1.066630
  204. details: Nepal_Chokhopani_2700BP.SG Russia_Shamanka_EN.SG 0.012584 31.827931
  205. details: Krasnoyarsk_MLBA Russia_Shamanka_EN.SG -0.004722 -21.510278
  206. dscore: Russia_Shamanka_EN.SG f4: 0.000412 Z: 2.021758
  207.  
  208. details: InPe Ethiopia_4500BP.SG 0.000644 2.332827
  209. details: Nepal_Chokhopani_2700BP.SG Ethiopia_4500BP.SG 0.000535 1.138974
  210. details: Krasnoyarsk_MLBA Ethiopia_4500BP.SG -0.003784 -13.987266
  211. dscore: Ethiopia_4500BP.SG f4: 0.000222 Z: 0.860357
  212.  
  213. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 1.771
  214. gendstat: Kazakhstan_Botai.SG PPN 2.113
  215. gendstat: Kazakhstan_Botai.SG Anatolia_N 1.781
  216. gendstat: Kazakhstan_Botai.SG Iberia_MN 3.213
  217. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 1.569
  218. gendstat: Kazakhstan_Botai.SG CHG 1.612
  219. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 0.684
  220. gendstat: Kazakhstan_Botai.SG EEHG 1.481
  221. gendstat: Kazakhstan_Botai.SG WEHG 1.667
  222. gendstat: Kazakhstan_Botai.SG WSHG 2.082
  223. gendstat: Kazakhstan_Botai.SG Onge.DG 0.834
  224. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 2.022
  225. gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG 0.860
  226. gendstat: Ganj_Dareh_N PPN 0.311
  227. gendstat: Ganj_Dareh_N Anatolia_N -0.331
  228. gendstat: Ganj_Dareh_N Iberia_MN 1.259
  229. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.159
  230. gendstat: Ganj_Dareh_N CHG -0.060
  231. gendstat: Ganj_Dareh_N Kostenki14.SG -0.841
  232. gendstat: Ganj_Dareh_N EEHG -0.465
  233. gendstat: Ganj_Dareh_N WEHG -0.501
  234. gendstat: Ganj_Dareh_N WSHG 0.023
  235. gendstat: Ganj_Dareh_N Onge.DG -0.799
  236. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.027
  237. gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG -0.724
  238. gendstat: PPN Anatolia_N -0.808
  239. gendstat: PPN Iberia_MN 0.978
  240. gendstat: PPN Russia_MA1.SG -0.413
  241. gendstat: PPN CHG -0.360
  242. gendstat: PPN Kostenki14.SG -1.094
  243. gendstat: PPN EEHG -0.774
  244. gendstat: PPN WEHG -0.878
  245. gendstat: PPN WSHG -0.257
  246. gendstat: PPN Onge.DG -1.099
  247. gendstat: PPN Russia_Shamanka_EN.SG -0.342
  248. gendstat: PPN Ethiopia_4500BP.SG -1.050
  249. gendstat: Anatolia_N Iberia_MN 2.246
  250. gendstat: Anatolia_N Russia_MA1.SG 0.069
  251. gendstat: Anatolia_N CHG 0.247
  252. gendstat: Anatolia_N Kostenki14.SG -0.692
  253. gendstat: Anatolia_N EEHG -0.271
  254. gendstat: Anatolia_N WEHG -0.328
  255. gendstat: Anatolia_N WSHG 0.313
  256. gendstat: Anatolia_N Onge.DG -0.644
  257. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.297
  258. gendstat: Anatolia_N Ethiopia_4500BP.SG -0.551
  259. gendstat: Iberia_MN Russia_MA1.SG -1.228
  260. gendstat: Iberia_MN CHG -1.226
  261. gendstat: Iberia_MN Kostenki14.SG -1.933
  262. gendstat: Iberia_MN EEHG -1.687
  263. gendstat: Iberia_MN WEHG -2.265
  264. gendstat: Iberia_MN WSHG -1.115
  265. gendstat: Iberia_MN Onge.DG -1.915
  266. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.288
  267. gendstat: Iberia_MN Ethiopia_4500BP.SG -1.873
  268. gendstat: Russia_MA1.SG CHG 0.107
  269. gendstat: Russia_MA1.SG Kostenki14.SG -0.632
  270. gendstat: Russia_MA1.SG EEHG -0.282
  271. gendstat: Russia_MA1.SG WEHG -0.270
  272. gendstat: Russia_MA1.SG WSHG 0.200
  273. gendstat: Russia_MA1.SG Onge.DG -0.559
  274. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 0.152
  275. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG -0.493
  276. gendstat: CHG Kostenki14.SG -0.723
  277. gendstat: CHG EEHG -0.418
  278. gendstat: CHG WEHG -0.413
  279. gendstat: CHG WSHG 0.072
  280. gendstat: CHG Onge.DG -0.731
  281. gendstat: CHG Russia_Shamanka_EN.SG 0.028
  282. gendstat: CHG Ethiopia_4500BP.SG -0.623
  283. gendstat: Kostenki14.SG EEHG 0.393
  284. gendstat: Kostenki14.SG WEHG 0.499
  285. gendstat: Kostenki14.SG WSHG 0.849
  286. gendstat: Kostenki14.SG Onge.DG 0.083
  287. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 0.875
  288. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.146
  289. gendstat: EEHG WEHG 0.053
  290. gendstat: EEHG WSHG 0.573
  291. gendstat: EEHG Onge.DG -0.331
  292. gendstat: EEHG Russia_Shamanka_EN.SG 0.490
  293. gendstat: EEHG Ethiopia_4500BP.SG -0.255
  294. gendstat: WEHG WSHG 0.549
  295. gendstat: WEHG Onge.DG -0.416
  296. gendstat: WEHG Russia_Shamanka_EN.SG 0.553
  297. gendstat: WEHG Ethiopia_4500BP.SG -0.332
  298. gendstat: WSHG Onge.DG -0.808
  299. gendstat: WSHG Russia_Shamanka_EN.SG -0.055
  300. gendstat: WSHG Ethiopia_4500BP.SG -0.691
  301. gendstat: Onge.DG Russia_Shamanka_EN.SG 0.950
  302. gendstat: Onge.DG Ethiopia_4500BP.SG 0.073
  303. gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG -0.759
  304.  
  305. ## end of run
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