API tools faq
paste
Advertisement
Guest User

catalina{todaysdata}.log

a guest
Apr 24th, 2019
62
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 75.57 KB | None | 0 0
raw download clone embed print report
  1. 24-Apr-2019 10:56:17.566 INFO [http-nio-8080-exec-6] org.apache.coyote.http11.Http11Processor.service Error parsing HTTP request header
  2. Note: further occurrences of HTTP request parsing errors will be logged at DEBUG level.
  3. java.lang.IllegalArgumentException: Invalid character found in method name. HTTP method names must be tokens
  4. at org.apache.coyote.http11.Http11InputBuffer.parseRequestLine(Http11InputBuffer.java:414)
  5. at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:294)
  6. at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
  7. at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:834)
  8. at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1415)
  9. at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
  10. at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  11. at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  12. at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
  13. at java.base/java.lang.Thread.run(Thread.java:834)
  14.  
  15. 24-Apr-2019 14:45:53.305 WARNING [http-nio-8080-exec-4] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  16. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  17. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  18. 24-Apr-2019 14:45:53.306 WARNING [http-nio-8080-exec-4] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  19. java.base@11.0.2/java.lang.Object.wait(Native Method)
  20. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  21. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  22. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  23. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  24. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  25. 24-Apr-2019 14:45:57.427 INFO [Abandoned connection cleanup thread] org.apache.catalina.loader.WebappClassLoaderBase.checkStateForResourceLoading Illegal access: this web application instance has been stopped already. Could not load []. The following stack trace is thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access.
  26. java.lang.IllegalStateException: Illegal access: this web application instance has been stopped already. Could not load []. The following stack trace is thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access.
  27. at org.apache.catalina.loader.WebappClassLoaderBase.checkStateForResourceLoading(WebappClassLoaderBase.java:1383)
  28. at org.apache.catalina.loader.WebappClassLoaderBase.getResource(WebappClassLoaderBase.java:1036)
  29. at com.mysql.jdbc.AbandonedConnectionCleanupThread.checkContextClassLoaders(AbandonedConnectionCleanupThread.java:90)
  30. at com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:63)
  31. at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  32. at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  33. at java.base/java.lang.Thread.run(Thread.java:834)
  34.  
  35. 24-Apr-2019 14:46:44.083 INFO [Catalina-utility-2] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs]
  36. 24-Apr-2019 14:57:24.178 INFO [Catalina-utility-2] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  37. 24-Apr-2019 14:57:24.182 WARNING [Catalina-utility-2] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  38. 24-Apr-2019 14:57:26.484 INFO [Catalina-utility-2] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  39. 24-Apr-2019 14:57:26.744 INFO [Catalina-utility-2] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [2,567] ms
  40. 24-Apr-2019 14:58:37.530 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  41. 24-Apr-2019 14:58:37.531 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  42. 24-Apr-2019 14:58:37.538 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  43. 24-Apr-2019 14:58:37.545 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  44. 24-Apr-2019 14:58:37.601 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-406] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  45. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  46. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  47. 24-Apr-2019 14:58:37.602 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  48. java.base@11.0.2/java.lang.Object.wait(Native Method)
  49. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  50. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  51. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  52. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  53. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  54. 24-Apr-2019 14:58:37.621 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ODKAggregate] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  55. 24-Apr-2019 14:58:37.622 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [ODKAggregate] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  56. java.base@11.0.2/java.lang.Object.wait(Native Method)
  57. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  58. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  59. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  60. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  61. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  62. 24-Apr-2019 14:58:37.628 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  63. 24-Apr-2019 14:58:37.629 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  64. 24-Apr-2019 14:58:37.631 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  65. 24-Apr-2019 14:58:37.631 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  66. 24-Apr-2019 14:58:39.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  67. 24-Apr-2019 14:58:39.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  68. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  69. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  70. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  71. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  72. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  73. 24-Apr-2019 14:58:39.160 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  74. 24-Apr-2019 14:58:39.161 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  75. 24-Apr-2019 14:58:39.161 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  76. 24-Apr-2019 14:58:39.161 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  77. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  78. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  79. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  80. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  81. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  82. 24-Apr-2019 14:58:39.163 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  83. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  84. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  85. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  86. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  87. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  88. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  89. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  90. 24-Apr-2019 14:58:39.164 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  91. 24-Apr-2019 14:58:39.165 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  92. 24-Apr-2019 14:58:39.165 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  93. 24-Apr-2019 14:58:39.165 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  94. 24-Apr-2019 14:58:39.165 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  95. 24-Apr-2019 14:58:39.198 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  96. 24-Apr-2019 14:58:39.219 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  97. 24-Apr-2019 14:58:39.220 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [433] milliseconds
  98. 24-Apr-2019 14:58:39.269 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  99. 24-Apr-2019 14:58:39.269 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  100. 24-Apr-2019 14:58:39.271 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  101. 24-Apr-2019 14:58:39.289 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  102. 24-Apr-2019 14:58:39.302 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  103. 24-Apr-2019 14:58:41.826 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  104. 24-Apr-2019 14:58:42.220 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [2,930] ms
  105. 24-Apr-2019 14:58:42.222 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  106. 24-Apr-2019 14:58:44.300 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,078] ms
  107. 24-Apr-2019 14:58:44.300 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  108. 24-Apr-2019 14:58:44.326 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [25] ms
  109. 24-Apr-2019 14:58:44.326 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  110. 24-Apr-2019 14:58:44.415 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [89] ms
  111. 24-Apr-2019 14:58:44.415 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  112. 24-Apr-2019 14:58:44.426 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [11] ms
  113. 24-Apr-2019 14:58:44.426 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  114. 24-Apr-2019 14:58:44.437 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [11] ms
  115. 24-Apr-2019 14:58:44.438 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  116. 24-Apr-2019 14:58:44.447 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [10] ms
  117. 24-Apr-2019 14:58:44.451 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  118. 24-Apr-2019 14:58:44.459 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  119. 24-Apr-2019 14:58:44.470 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [5,249] milliseconds
  120. 24-Apr-2019 15:20:43.846 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  121. 24-Apr-2019 15:20:43.846 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  122. 24-Apr-2019 15:20:43.852 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  123. 24-Apr-2019 15:20:43.858 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  124. 24-Apr-2019 15:20:43.918 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  125. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  126. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  127. 24-Apr-2019 15:20:43.918 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  128. java.base@11.0.2/java.lang.Object.wait(Native Method)
  129. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  130. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  131. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  132. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  133. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  134. 24-Apr-2019 15:20:43.935 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ODKAggregate] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  135. 24-Apr-2019 15:20:43.935 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [ODKAggregate] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  136. java.base@11.0.2/java.lang.Object.wait(Native Method)
  137. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  138. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  139. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  140. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  141. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  142. 24-Apr-2019 15:20:43.940 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  143. 24-Apr-2019 15:20:43.943 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  144. 24-Apr-2019 15:20:43.945 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  145. 24-Apr-2019 15:20:43.946 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  146. 24-Apr-2019 15:20:45.462 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  147. 24-Apr-2019 15:20:45.466 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  148. 24-Apr-2019 15:20:45.466 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  149. 24-Apr-2019 15:20:45.466 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  150. 24-Apr-2019 15:20:45.466 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  151. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  152. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  153. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  154. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  155. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  156. 24-Apr-2019 15:20:45.467 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  157. 24-Apr-2019 15:20:45.469 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  158. 24-Apr-2019 15:20:45.469 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  159. 24-Apr-2019 15:20:45.469 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  160. 24-Apr-2019 15:20:45.469 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  161. 24-Apr-2019 15:20:45.469 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  162. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  163. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  164. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  165. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  166. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  167. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  168. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  169. 24-Apr-2019 15:20:45.470 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  170. 24-Apr-2019 15:20:45.471 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  171. 24-Apr-2019 15:20:45.471 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  172. 24-Apr-2019 15:20:45.471 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  173. 24-Apr-2019 15:20:45.471 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  174. 24-Apr-2019 15:20:45.471 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  175. 24-Apr-2019 15:20:45.504 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  176. 24-Apr-2019 15:20:45.524 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  177. 24-Apr-2019 15:20:45.526 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [430] milliseconds
  178. 24-Apr-2019 15:20:45.571 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  179. 24-Apr-2019 15:20:45.571 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  180. 24-Apr-2019 15:20:45.574 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  181. 24-Apr-2019 15:20:45.591 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  182. 24-Apr-2019 15:20:45.603 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  183. 24-Apr-2019 15:20:48.320 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  184. 24-Apr-2019 15:20:48.737 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [3,146] ms
  185. 24-Apr-2019 15:20:48.739 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  186. 24-Apr-2019 15:20:51.273 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,534] ms
  187. 24-Apr-2019 15:20:51.274 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  188. 24-Apr-2019 15:20:51.308 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [34] ms
  189. 24-Apr-2019 15:20:51.308 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  190. 24-Apr-2019 15:20:51.415 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [106] ms
  191. 24-Apr-2019 15:20:51.415 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  192. 24-Apr-2019 15:20:51.427 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [11] ms
  193. 24-Apr-2019 15:20:51.427 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  194. 24-Apr-2019 15:20:51.440 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [13] ms
  195. 24-Apr-2019 15:20:51.440 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  196. 24-Apr-2019 15:20:51.452 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [12] ms
  197. 24-Apr-2019 15:20:51.458 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  198. 24-Apr-2019 15:20:51.468 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  199. 24-Apr-2019 15:20:51.478 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [5,951] milliseconds
  200. 24-Apr-2019 15:52:13.431 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  201. 24-Apr-2019 15:52:13.432 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  202. 24-Apr-2019 15:52:13.439 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  203. 24-Apr-2019 15:52:13.446 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  204. 24-Apr-2019 15:52:13.484 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  205. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  206. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  207. 24-Apr-2019 15:52:13.485 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  208. java.base@11.0.2/java.lang.Object.wait(Native Method)
  209. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  210. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  211. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  212. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  213. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  214. 24-Apr-2019 15:52:13.486 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [org.azeckoski.reflectutils.refmap.Finalizer] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  215. java.base@11.0.2/java.lang.Object.wait(Native Method)
  216. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  217. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:176)
  218. org.azeckoski.reflectutils.refmap.Finalizer.run(Finalizer.java:127)
  219. 24-Apr-2019 15:52:13.502 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ODKAggregate] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  220. 24-Apr-2019 15:52:13.502 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [ODKAggregate] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  221. java.base@11.0.2/java.lang.Object.wait(Native Method)
  222. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  223. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  224. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  225. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  226. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  227. 24-Apr-2019 15:52:13.510 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  228. 24-Apr-2019 15:52:13.512 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  229. 24-Apr-2019 15:52:13.514 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  230. 24-Apr-2019 15:52:13.515 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  231. 24-Apr-2019 15:54:21.878 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  232. 24-Apr-2019 15:54:21.881 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  233. 24-Apr-2019 15:54:21.881 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  234. 24-Apr-2019 15:54:21.882 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  235. 24-Apr-2019 15:54:21.882 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  236. 24-Apr-2019 15:54:21.882 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  237. 24-Apr-2019 15:54:21.882 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  238. 24-Apr-2019 15:54:21.882 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  239. 24-Apr-2019 15:54:21.883 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  240. 24-Apr-2019 15:54:21.883 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  241. 24-Apr-2019 15:54:21.883 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  242. 24-Apr-2019 15:54:21.885 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  243. 24-Apr-2019 15:54:21.885 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  244. 24-Apr-2019 15:54:21.885 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  245. 24-Apr-2019 15:54:21.885 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  246. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  247. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  248. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  249. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  250. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  251. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  252. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  253. 24-Apr-2019 15:54:21.886 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  254. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  255. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  256. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  257. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  258. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  259. 24-Apr-2019 15:54:21.887 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  260. 24-Apr-2019 15:54:22.059 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  261. 24-Apr-2019 15:54:22.093 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  262. 24-Apr-2019 15:54:22.095 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [1,536] milliseconds
  263. 24-Apr-2019 15:54:22.248 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  264. 24-Apr-2019 15:54:22.249 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  265. 24-Apr-2019 15:54:22.251 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  266. 24-Apr-2019 15:54:22.371 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  267. 24-Apr-2019 15:54:22.454 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  268. 24-Apr-2019 15:54:28.380 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  269. 24-Apr-2019 15:54:44.898 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [22,527] ms
  270. 24-Apr-2019 15:54:44.954 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  271. 24-Apr-2019 15:54:47.869 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,914] ms
  272. 24-Apr-2019 15:54:47.870 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  273. 24-Apr-2019 15:54:47.975 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [104] ms
  274. 24-Apr-2019 15:54:47.975 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  275. 24-Apr-2019 15:54:48.129 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [154] ms
  276. 24-Apr-2019 15:54:48.129 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  277. 24-Apr-2019 15:54:48.143 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [14] ms
  278. 24-Apr-2019 15:54:48.143 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  279. 24-Apr-2019 15:54:48.155 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [12] ms
  280. 24-Apr-2019 15:54:48.155 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  281. 24-Apr-2019 15:54:48.173 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [17] ms
  282. 24-Apr-2019 15:54:48.175 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  283. 24-Apr-2019 15:54:48.184 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  284. 24-Apr-2019 15:54:48.186 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [26,090] milliseconds
  285. 24-Apr-2019 16:19:31.825 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  286. 24-Apr-2019 16:19:31.826 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  287. 24-Apr-2019 16:19:31.833 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  288. 24-Apr-2019 16:19:31.840 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  289. 24-Apr-2019 16:21:39.229 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  290. 24-Apr-2019 16:21:39.234 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  291. 24-Apr-2019 16:21:39.234 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  292. 24-Apr-2019 16:21:39.234 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  293. 24-Apr-2019 16:21:39.234 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  294. 24-Apr-2019 16:21:39.235 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  295. 24-Apr-2019 16:21:39.235 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  296. 24-Apr-2019 16:21:39.235 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  297. 24-Apr-2019 16:21:39.235 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  298. 24-Apr-2019 16:21:39.236 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  299. 24-Apr-2019 16:21:39.236 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  300. 24-Apr-2019 16:21:39.236 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  301. 24-Apr-2019 16:21:39.237 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  302. 24-Apr-2019 16:21:39.237 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  303. 24-Apr-2019 16:21:39.237 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  304. 24-Apr-2019 16:21:39.237 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  305. 24-Apr-2019 16:21:39.237 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  306. 24-Apr-2019 16:21:39.238 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  307. 24-Apr-2019 16:21:39.238 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  308. 24-Apr-2019 16:21:39.238 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  309. 24-Apr-2019 16:21:39.238 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  310. 24-Apr-2019 16:21:39.238 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  311. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  312. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  313. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  314. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  315. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  316. 24-Apr-2019 16:21:39.239 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  317. 24-Apr-2019 16:21:39.240 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  318. 24-Apr-2019 16:21:39.305 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  319. 24-Apr-2019 16:21:39.353 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  320. 24-Apr-2019 16:21:39.356 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [1,595] milliseconds
  321. 24-Apr-2019 16:21:39.532 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  322. 24-Apr-2019 16:21:39.532 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  323. 24-Apr-2019 16:21:39.554 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  324. 24-Apr-2019 16:21:39.688 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  325. 24-Apr-2019 16:21:39.748 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  326. 24-Apr-2019 16:21:45.302 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  327. 24-Apr-2019 16:22:01.867 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [22,179] ms
  328. 24-Apr-2019 16:22:01.925 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  329. 24-Apr-2019 16:22:04.665 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,740] ms
  330. 24-Apr-2019 16:22:04.666 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  331. 24-Apr-2019 16:22:04.766 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [100] ms
  332. 24-Apr-2019 16:22:04.766 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  333. 24-Apr-2019 16:22:04.994 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [227] ms
  334. 24-Apr-2019 16:22:04.994 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  335. 24-Apr-2019 16:22:05.011 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [16] ms
  336. 24-Apr-2019 16:22:05.011 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  337. 24-Apr-2019 16:22:05.024 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [12] ms
  338. 24-Apr-2019 16:22:05.024 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  339. 24-Apr-2019 16:22:05.038 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [14] ms
  340. 24-Apr-2019 16:22:05.041 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  341. 24-Apr-2019 16:22:05.047 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  342. 24-Apr-2019 16:22:05.049 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [25,692] milliseconds
  343. 24-Apr-2019 16:24:19.226 WARNING [http-nio-8080-exec-1] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  344. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  345. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  346. 24-Apr-2019 16:24:19.227 WARNING [http-nio-8080-exec-1] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  347. java.base@11.0.2/java.lang.Object.wait(Native Method)
  348. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  349. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  350. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  351. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  352. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  353. 24-Apr-2019 16:24:23.633 INFO [Abandoned connection cleanup thread] org.apache.catalina.loader.WebappClassLoaderBase.checkStateForResourceLoading Illegal access: this web application instance has been stopped already. Could not load []. The following stack trace is thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access.
  354. java.lang.IllegalStateException: Illegal access: this web application instance has been stopped already. Could not load []. The following stack trace is thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access.
  355. at org.apache.catalina.loader.WebappClassLoaderBase.checkStateForResourceLoading(WebappClassLoaderBase.java:1383)
  356. at org.apache.catalina.loader.WebappClassLoaderBase.getResource(WebappClassLoaderBase.java:1036)
  357. at com.mysql.jdbc.AbandonedConnectionCleanupThread.checkContextClassLoaders(AbandonedConnectionCleanupThread.java:90)
  358. at com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:63)
  359. at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  360. at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  361. at java.base/java.lang.Thread.run(Thread.java:834)
  362.  
  363. 24-Apr-2019 16:24:24.932 INFO [http-nio-8080-exec-8] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  364. 24-Apr-2019 16:28:36.634 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  365. 24-Apr-2019 16:28:36.634 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  366. 24-Apr-2019 16:28:36.641 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  367. 24-Apr-2019 16:28:36.646 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  368. 24-Apr-2019 16:28:36.710 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-88] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  369. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  370. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  371. 24-Apr-2019 16:28:36.711 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  372. java.base@11.0.2/java.lang.Object.wait(Native Method)
  373. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  374. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  375. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  376. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  377. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  378. 24-Apr-2019 16:28:36.727 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ODKAggregate] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  379. 24-Apr-2019 16:28:36.727 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [ODKAggregate] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  380. java.base@11.0.2/java.lang.Object.wait(Native Method)
  381. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  382. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  383. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  384. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  385. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  386. 24-Apr-2019 16:28:36.734 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  387. 24-Apr-2019 16:28:36.737 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  388. 24-Apr-2019 16:28:36.738 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  389. 24-Apr-2019 16:28:36.739 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  390. 24-Apr-2019 16:28:38.255 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  391. 24-Apr-2019 16:28:38.258 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  392. 24-Apr-2019 16:28:38.258 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  393. 24-Apr-2019 16:28:38.258 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  394. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  395. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  396. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  397. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  398. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  399. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  400. 24-Apr-2019 16:28:38.259 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  401. 24-Apr-2019 16:28:38.261 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  402. 24-Apr-2019 16:28:38.261 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  403. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  404. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  405. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  406. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  407. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  408. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  409. 24-Apr-2019 16:28:38.262 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  410. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  411. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  412. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  413. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  414. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  415. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  416. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  417. 24-Apr-2019 16:28:38.263 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  418. 24-Apr-2019 16:28:38.264 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  419. 24-Apr-2019 16:28:38.297 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  420. 24-Apr-2019 16:28:38.318 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  421. 24-Apr-2019 16:28:38.319 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [431] milliseconds
  422. 24-Apr-2019 16:28:38.366 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  423. 24-Apr-2019 16:28:38.366 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  424. 24-Apr-2019 16:28:38.368 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  425. 24-Apr-2019 16:28:38.386 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  426. 24-Apr-2019 16:28:38.398 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  427. 24-Apr-2019 16:28:41.116 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  428. 24-Apr-2019 16:28:58.170 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [19,785] ms
  429. 24-Apr-2019 16:28:58.173 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  430. 24-Apr-2019 16:29:00.281 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,108] ms
  431. 24-Apr-2019 16:29:00.283 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  432. 24-Apr-2019 16:29:00.309 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [26] ms
  433. 24-Apr-2019 16:29:00.309 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  434. 24-Apr-2019 16:29:00.402 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [93] ms
  435. 24-Apr-2019 16:29:00.402 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  436. 24-Apr-2019 16:29:00.413 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [10] ms
  437. 24-Apr-2019 16:29:00.413 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  438. 24-Apr-2019 16:29:00.425 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [11] ms
  439. 24-Apr-2019 16:29:00.425 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  440. 24-Apr-2019 16:29:00.435 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [10] ms
  441. 24-Apr-2019 16:29:00.438 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  442. 24-Apr-2019 16:29:00.445 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  443. 24-Apr-2019 16:29:00.450 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [22,130] milliseconds
  444. 24-Apr-2019 16:30:09.158 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  445. 24-Apr-2019 16:30:09.158 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  446. 24-Apr-2019 16:30:09.164 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  447. 24-Apr-2019 16:30:09.170 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  448. 24-Apr-2019 16:30:09.250 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  449. java.base@11.0.2/java.lang.Thread.sleep(Native Method)
  450. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  451. 24-Apr-2019 16:30:09.250 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  452. java.base@11.0.2/java.lang.Object.wait(Native Method)
  453. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  454. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  455. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  456. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  457. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  458. 24-Apr-2019 16:30:09.270 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [ODKAggregate] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  459. 24-Apr-2019 16:30:09.270 WARNING [main] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [ODKAggregate] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  460. java.base@11.0.2/java.lang.Object.wait(Native Method)
  461. java.base@11.0.2/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  462. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  463. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  464. java.base@11.0.2/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  465. java.base@11.0.2/java.lang.Thread.run(Thread.java:834)
  466. 24-Apr-2019 16:30:09.277 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  467. 24-Apr-2019 16:30:09.279 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  468. 24-Apr-2019 16:30:09.281 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  469. 24-Apr-2019 16:30:09.282 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  470. 24-Apr-2019 16:32:14.260 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.17
  471. 24-Apr-2019 16:32:14.264 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 13 2019 15:55:27 UTC
  472. 24-Apr-2019 16:32:14.264 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.17.0
  473. 24-Apr-2019 16:32:14.264 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  474. 24-Apr-2019 16:32:14.264 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-47-generic
  475. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  476. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  477. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.2+9-Ubuntu-3ubuntu118.04.3
  478. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  479. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  480. 24-Apr-2019 16:32:14.265 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  481. 24-Apr-2019 16:32:14.266 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  482. 24-Apr-2019 16:32:14.267 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  483. 24-Apr-2019 16:32:14.267 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  484. 24-Apr-2019 16:32:14.267 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  485. 24-Apr-2019 16:32:14.267 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  486. 24-Apr-2019 16:32:14.267 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  487. 24-Apr-2019 16:32:14.268 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.security.egd=file:/dev/./urandom
  488. 24-Apr-2019 16:32:14.268 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  489. 24-Apr-2019 16:32:14.268 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  490. 24-Apr-2019 16:32:14.268 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  491. 24-Apr-2019 16:32:14.268 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms512M
  492. 24-Apr-2019 16:32:14.269 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1024M
  493. 24-Apr-2019 16:32:14.269 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseParallelGC
  494. 24-Apr-2019 16:32:14.269 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  495. 24-Apr-2019 16:32:14.269 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  496. 24-Apr-2019 16:32:14.269 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  497. 24-Apr-2019 16:32:14.270 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  498. 24-Apr-2019 16:32:14.270 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
  499. 24-Apr-2019 16:32:14.476 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  500. 24-Apr-2019 16:32:14.508 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  501. 24-Apr-2019 16:32:14.510 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [1,818] milliseconds
  502. 24-Apr-2019 16:32:14.807 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  503. 24-Apr-2019 16:32:14.807 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.17]
  504. 24-Apr-2019 16:32:14.810 SEVERE [main] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/tomcat/conf/Catalina/localhost]
  505. 24-Apr-2019 16:32:14.987 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/openmrs.war]
  506. 24-Apr-2019 16:32:15.007 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  507. 24-Apr-2019 16:32:20.292 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  508. 24-Apr-2019 16:32:37.066 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/openmrs.war] has finished in [22,079] ms
  509. 24-Apr-2019 16:32:37.126 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/opt/tomcat/webapps/ODKAggregate.war]
  510. 24-Apr-2019 16:32:40.047 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/opt/tomcat/webapps/ODKAggregate.war] has finished in [2,921] ms
  511. 24-Apr-2019 16:32:40.047 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/manager]
  512. 24-Apr-2019 16:32:40.174 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/manager] has finished in [127] ms
  513. 24-Apr-2019 16:32:40.175 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/examples]
  514. 24-Apr-2019 16:32:40.428 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/examples] has finished in [252] ms
  515. 24-Apr-2019 16:32:40.428 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/docs]
  516. 24-Apr-2019 16:32:40.440 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/docs] has finished in [12] ms
  517. 24-Apr-2019 16:32:40.440 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/host-manager]
  518. 24-Apr-2019 16:32:40.454 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/host-manager] has finished in [14] ms
  519. 24-Apr-2019 16:32:40.454 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/opt/tomcat/webapps/ROOT]
  520. 24-Apr-2019 16:32:40.469 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/opt/tomcat/webapps/ROOT] has finished in [15] ms
  521. 24-Apr-2019 16:32:40.472 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  522. 24-Apr-2019 16:32:40.481 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  523. 24-Apr-2019 16:32:40.483 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [25,972] milliseconds
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!