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misnomer001

udegram krasnoyarsk SiS gonur1 fail

misnomer001
Jan 10th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1610876598
  4.  
  5. left pops:
  6. Udegram_IA
  7. Shahr_I_Sokhta_BA2
  8. Gonur1_BA
  9. Krasnoyarsk_MLBA
  10. Nepal_Chokhopani_2700BP.SG
  11.  
  12. right pops:
  13. Kazakhstan_Botai.SG
  14. Ganj_Dareh_N
  15. PPN
  16. Anatolia_N
  17. Iberia_MN
  18. Russia_MA1.SG
  19. Georgia_Satsurblia.SG
  20. Kostenki14.SG
  21. Russia_Karelia_HG
  22. Serbia_Iron_Gates_HG
  23. Tyumen_HG
  24. Onge.DG
  25. Russia_Shamanka_EN.SG
  26.  
  27. 0 Udegram_IA 12
  28. 1 Shahr_I_Sokhta_BA2 8
  29. 2 Gonur1_BA 18
  30. 3 Krasnoyarsk_MLBA 16
  31. 4 Nepal_Chokhopani_2700BP.SG 1
  32. 5 Kazakhstan_Botai.SG 3
  33. 6 Ganj_Dareh_N 7
  34. 7 PPN 8
  35. 8 Anatolia_N 22
  36. 9 Iberia_MN 4
  37. 10 Russia_MA1.SG 1
  38. 11 Georgia_Satsurblia.SG 1
  39. 12 Kostenki14.SG 1
  40. 13 Russia_Karelia_HG 2
  41. 14 Serbia_Iron_Gates_HG 32
  42. 15 Tyumen_HG 2
  43. 16 Onge.DG 2
  44. 17 Russia_Shamanka_EN.SG 10
  45. jackknife block size: 0.050
  46. snps: 1150477 indivs: 150
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150477
  49. coverage: Udegram_IA 1086384
  50. coverage: Shahr_I_Sokhta_BA2 902230
  51. coverage: Gonur1_BA 949932
  52. coverage: Krasnoyarsk_MLBA 1082457
  53. coverage: Nepal_Chokhopani_2700BP.SG 1147419
  54. coverage: Kazakhstan_Botai.SG 1149870
  55. coverage: Ganj_Dareh_N 1029695
  56. coverage: PPN 835499
  57. coverage: Anatolia_N 1134099
  58. coverage: Iberia_MN 967760
  59. coverage: Russia_MA1.SG 805960
  60. coverage: Georgia_Satsurblia.SG 801311
  61. coverage: Kostenki14.SG 1048972
  62. coverage: Russia_Karelia_HG 1010733
  63. coverage: Serbia_Iron_Gates_HG 1139259
  64. coverage: Tyumen_HG 807474
  65. coverage: Onge.DG 1120748
  66. coverage: Russia_Shamanka_EN.SG 1149998
  67. dof (jackknife): 469.080
  68. numsnps used: 1150477
  69. codimension 1
  70. f4info:
  71. f4rank: 3 dof: 9 chisq: 32.109 tail: 0.000190641839 dofdiff: 11 chisqdiff: -32.109 taildiff: 1
  72. B:
  73. scale 1.000 1.000 1.000
  74. Ganj_Dareh_N 0.890 2.524 0.909
  75. PPN 0.788 0.592 -0.273
  76. Anatolia_N 1.019 0.324 -0.645
  77. Iberia_MN 0.887 -0.089 -0.230
  78. Russia_MA1.SG 0.130 0.315 0.620
  79. Georgia_Satsurblia.SG 0.747 1.367 -0.084
  80. Kostenki14.SG 0.145 0.512 0.696
  81. Russia_Karelia_HG 0.593 -0.561 0.894
  82. Serbia_Iron_Gates_HG 0.829 -0.978 -0.032
  83. Tyumen_HG 0.180 -0.053 1.082
  84. Onge.DG -1.496 1.131 1.400
  85. Russia_Shamanka_EN.SG -2.204 0.618 -2.414
  86. A:
  87. scale 328.949 826.206 2360.848
  88. Shahr_I_Sokhta_BA2 -0.199 0.417 0.555
  89. Gonur1_BA 0.418 0.682 -0.855
  90. Krasnoyarsk_MLBA 0.414 -1.808 -0.355
  91. Nepal_Chokhopani_2700BP.SG -1.901 -0.304 -1.684
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 32.109 taildiff: 0.000190641839
  97. B:
  98. scale 1.000 1.000 1.000 1.000
  99. Ganj_Dareh_N 0.941 2.500 -1.600 -0.506
  100. PPN 0.858 0.574 0.154 -0.184
  101. Anatolia_N 1.081 0.298 0.381 -0.569
  102. Iberia_MN 0.946 -0.101 0.386 0.188
  103. Russia_MA1.SG 0.123 0.326 -0.681 0.227
  104. Georgia_Satsurblia.SG 0.772 1.312 -0.639 -0.998
  105. Kostenki14.SG 0.174 0.508 -0.346 0.566
  106. Russia_Karelia_HG 0.608 -0.568 -0.090 1.383
  107. Serbia_Iron_Gates_HG 0.888 -1.009 0.795 1.175
  108. Tyumen_HG 0.186 -0.039 -0.639 1.121
  109. Onge.DG -1.436 1.207 -0.156 1.650
  110. Russia_Shamanka_EN.SG -2.103 0.663 2.657 -1.647
  111. A:
  112. scale 352.510 805.607 1362.836 3652.610
  113. Shahr_I_Sokhta_BA2 -0.079 0.897 0.624 1.923
  114. Gonur1_BA 0.539 0.877 0.729 -0.007
  115. Krasnoyarsk_MLBA 0.483 -1.545 0.496 0.523
  116. Nepal_Chokhopani_2700BP.SG -1.863 0.201 1.683 -0.162
  117.  
  118.  
  119. best coefficients: 0.554 0.212 0.202 0.032
  120. Jackknife mean: 0.551618646 0.213452362 0.202048957 0.032880035
  121. std. errors: 0.056 0.048 0.014 0.012
  122.  
  123. error covariance (* 1000000)
  124. 3100 -2554 74 -620
  125. -2554 2334 -262 482
  126. 74 -262 205 -17
  127. -620 482 -17 154
  128.  
  129.  
  130. summ: Udegram_IA 4 0.000191 0.552 0.213 0.202 0.033 3100 -2554 74 -620 2334 -262 482 205 -17 154
  131.  
  132. fixed pat wt dof chisq tail prob
  133. 0000 0 9 32.109 0.000190642 0.554 0.212 0.202 0.032
  134. 0001 1 10 39.146 2.39345e-05 0.679 0.116 0.205 -0.000
  135. 0010 1 10 186.061 0 2.907 -1.443 -0.000 -0.464 infeasible
  136. 0100 1 10 48.769 4.4898e-07 0.790 0.000 0.224 -0.013 infeasible
  137. 1000 1 10 140.949 2.69305e-25 -0.000 0.654 0.200 0.146
  138. 0011 2 11 213.440 0 0.734 0.266 -0.000 -0.000
  139. 0101 2 11 50.006 6.24456e-07 0.766 0.000 0.234 -0.000
  140. 0110 2 11 202.726 0 1.074 0.000 -0.000 -0.074 infeasible
  141. 1001 2 11 772.642 0 0.000 0.849 0.151 -0.000
  142. 1010 2 11 304.261 0 0.000 0.853 -0.000 0.147
  143. 1100 2 11 1293.468 0 -0.000 0.000 0.783 0.217
  144. 0111 3 12 260.381 0 1.000 0.000 -0.000 -0.000
  145. 1011 3 12 831.171 0 0.000 1.000 -0.000 -0.000
  146. 1101 3 12 2137.993 0 0.000 -0.000 1.000 -0.000
  147. 1110 3 12 3589.391 0 0.000 0.000 -0.000 1.000
  148. best pat: 0000 0.000190642 - -
  149. best pat: 1000 2.69305e-25 chi(nested): 108.840 p-value for nested model: 1.75971e-25
  150. best pat: 0101 6.24456e-07 not nested
  151. best pat: 0111 9.32171e-49 chi(nested): 210.376 p-value for nested model: 1.1374e-47
  152.  
  153. coeffs: 0.554 0.212 0.202 0.032
  154.  
  155. ## dscore:: f_4(Base, Fit, Rbase, right2)
  156. ## genstat:: f_4(Base, Fit, right1, right2)
  157.  
  158. details: Shahr_I_Sokhta_BA2 Ganj_Dareh_N 0.001609 7.400181
  159. details: Gonur1_BA Ganj_Dareh_N 0.003328 16.923599
  160. details: Krasnoyarsk_MLBA Ganj_Dareh_N -0.004161 -20.463985
  161. details: Nepal_Chokhopani_2700BP.SG Ganj_Dareh_N -0.006438 -17.192598
  162. dscore: Ganj_Dareh_N f4: 0.000546 Z: 3.311573
  163.  
  164. details: Shahr_I_Sokhta_BA2 PPN 0.000472 2.108542
  165. details: Gonur1_BA PPN 0.002058 9.852359
  166. details: Krasnoyarsk_MLBA PPN 0.000102 0.502300
  167. details: Nepal_Chokhopani_2700BP.SG PPN -0.004311 -12.212841
  168. dscore: PPN f4: 0.000578 Z: 3.473053
  169.  
  170. details: Shahr_I_Sokhta_BA2 Anatolia_N 0.000039 0.210263
  171. details: Gonur1_BA Anatolia_N 0.002224 12.717279
  172. details: Krasnoyarsk_MLBA Anatolia_N 0.000959 5.061966
  173. details: Nepal_Chokhopani_2700BP.SG Anatolia_N -0.005294 -16.326018
  174. dscore: Anatolia_N f4: 0.000515 Z: 3.650638
  175.  
  176. details: Shahr_I_Sokhta_BA2 Iberia_MN 0.000004 0.017715
  177. details: Gonur1_BA Iberia_MN 0.001594 8.438654
  178. details: Krasnoyarsk_MLBA Iberia_MN 0.001647 8.294707
  179. details: Nepal_Chokhopani_2700BP.SG Iberia_MN -0.004691 -13.617347
  180. dscore: Iberia_MN f4: 0.000520 Z: 3.511747
  181.  
  182. details: Shahr_I_Sokhta_BA2 Russia_MA1.SG 0.000192 0.852272
  183. details: Gonur1_BA Russia_MA1.SG 0.000157 0.818791
  184. details: Krasnoyarsk_MLBA Russia_MA1.SG -0.000699 -3.410394
  185. details: Nepal_Chokhopani_2700BP.SG Russia_MA1.SG -0.001507 -3.829262
  186. dscore: Russia_MA1.SG f4: -0.000051 Z: -0.303706
  187.  
  188. details: Shahr_I_Sokhta_BA2 Georgia_Satsurblia.SG 0.000472 1.980469
  189. details: Gonur1_BA Georgia_Satsurblia.SG 0.002334 11.107263
  190. details: Krasnoyarsk_MLBA Georgia_Satsurblia.SG -0.001863 -8.222392
  191. details: Nepal_Chokhopani_2700BP.SG Georgia_Satsurblia.SG -0.004610 -11.206797
  192. dscore: Georgia_Satsurblia.SG f4: 0.000230 Z: 1.306061
  193.  
  194. details: Shahr_I_Sokhta_BA2 Kostenki14.SG 0.000769 3.201402
  195. details: Gonur1_BA Kostenki14.SG 0.000664 2.911984
  196. details: Krasnoyarsk_MLBA Kostenki14.SG -0.000787 -3.235809
  197. details: Nepal_Chokhopani_2700BP.SG Kostenki14.SG -0.001328 -2.851778
  198. dscore: Kostenki14.SG f4: 0.000364 Z: 1.994246
  199.  
  200. details: Shahr_I_Sokhta_BA2 Russia_Karelia_HG 0.000006 0.026457
  201. details: Gonur1_BA Russia_Karelia_HG 0.000290 1.430936
  202. details: Krasnoyarsk_MLBA Russia_Karelia_HG 0.002131 10.239960
  203. details: Nepal_Chokhopani_2700BP.SG Russia_Karelia_HG -0.003632 -9.038890
  204. dscore: Russia_Karelia_HG f4: 0.000377 Z: 2.263178
  205.  
  206. details: Shahr_I_Sokhta_BA2 Serbia_Iron_Gates_HG -0.000301 -1.693515
  207. details: Gonur1_BA Serbia_Iron_Gates_HG 0.000710 4.321050
  208. details: Krasnoyarsk_MLBA Serbia_Iron_Gates_HG 0.003604 19.383639
  209. details: Nepal_Chokhopani_2700BP.SG Serbia_Iron_Gates_HG -0.004153 -12.853773
  210. dscore: Serbia_Iron_Gates_HG f4: 0.000577 Z: 4.261163
  211.  
  212. details: Shahr_I_Sokhta_BA2 Tyumen_HG 0.000273 1.290477
  213. details: Gonur1_BA Tyumen_HG -0.000126 -0.643454
  214. details: Krasnoyarsk_MLBA Tyumen_HG 0.000249 1.323940
  215. details: Nepal_Chokhopani_2700BP.SG Tyumen_HG -0.001852 -5.070579
  216. dscore: Tyumen_HG f4: 0.000115 Z: 0.717279
  217.  
  218. details: Shahr_I_Sokhta_BA2 Onge.DG 0.002548 11.515716
  219. details: Gonur1_BA Onge.DG -0.000923 -4.415339
  220. details: Krasnoyarsk_MLBA Onge.DG -0.004110 -18.401724
  221. details: Nepal_Chokhopani_2700BP.SG Onge.DG 0.007629 17.270283
  222. dscore: Onge.DG f4: 0.000633 Z: 3.626730
  223.  
  224. details: Shahr_I_Sokhta_BA2 Russia_Shamanka_EN.SG 0.001631 8.826695
  225. details: Gonur1_BA Russia_Shamanka_EN.SG -0.001045 -6.398876
  226. details: Krasnoyarsk_MLBA Russia_Shamanka_EN.SG -0.003417 -20.088562
  227. details: Nepal_Chokhopani_2700BP.SG Russia_Shamanka_EN.SG 0.014626 38.151050
  228. dscore: Russia_Shamanka_EN.SG f4: 0.000466 Z: 3.282878
  229.  
  230. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 3.312
  231. gendstat: Kazakhstan_Botai.SG PPN 3.473
  232. gendstat: Kazakhstan_Botai.SG Anatolia_N 3.651
  233. gendstat: Kazakhstan_Botai.SG Iberia_MN 3.512
  234. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.304
  235. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 1.306
  236. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 1.994
  237. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 2.263
  238. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 4.261
  239. gendstat: Kazakhstan_Botai.SG Tyumen_HG 0.717
  240. gendstat: Kazakhstan_Botai.SG Onge.DG 3.627
  241. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 3.283
  242. gendstat: Ganj_Dareh_N PPN 0.197
  243. gendstat: Ganj_Dareh_N Anatolia_N -0.227
  244. gendstat: Ganj_Dareh_N Iberia_MN -0.163
  245. gendstat: Ganj_Dareh_N Russia_MA1.SG -2.991
  246. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.776
  247. gendstat: Ganj_Dareh_N Kostenki14.SG -0.935
  248. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.860
  249. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.200
  250. gendstat: Ganj_Dareh_N Tyumen_HG -2.166
  251. gendstat: Ganj_Dareh_N Onge.DG 0.484
  252. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.476
  253. gendstat: PPN Anatolia_N -0.580
  254. gendstat: PPN Iberia_MN -0.428
  255. gendstat: PPN Russia_MA1.SG -3.002
  256. gendstat: PPN Georgia_Satsurblia.SG -1.894
  257. gendstat: PPN Kostenki14.SG -1.141
  258. gendstat: PPN Russia_Karelia_HG -1.030
  259. gendstat: PPN Serbia_Iron_Gates_HG -0.007
  260. gendstat: PPN Tyumen_HG -2.282
  261. gendstat: PPN Onge.DG 0.301
  262. gendstat: PPN Russia_Shamanka_EN.SG -0.679
  263. gendstat: Anatolia_N Iberia_MN 0.052
  264. gendstat: Anatolia_N Russia_MA1.SG -3.098
  265. gendstat: Anatolia_N Georgia_Satsurblia.SG -1.750
  266. gendstat: Anatolia_N Kostenki14.SG -0.904
  267. gendstat: Anatolia_N Russia_Karelia_HG -0.806
  268. gendstat: Anatolia_N Serbia_Iron_Gates_HG 0.578
  269. gendstat: Anatolia_N Tyumen_HG -2.170
  270. gendstat: Anatolia_N Onge.DG 0.729
  271. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.346
  272. gendstat: Iberia_MN Russia_MA1.SG -3.051
  273. gendstat: Iberia_MN Georgia_Satsurblia.SG -1.554
  274. gendstat: Iberia_MN Kostenki14.SG -0.858
  275. gendstat: Iberia_MN Russia_Karelia_HG -0.785
  276. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.474
  277. gendstat: Iberia_MN Tyumen_HG -2.102
  278. gendstat: Iberia_MN Onge.DG 0.647
  279. gendstat: Iberia_MN Russia_Shamanka_EN.SG -0.351
  280. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 1.274
  281. gendstat: Russia_MA1.SG Kostenki14.SG 1.888
  282. gendstat: Russia_MA1.SG Russia_Karelia_HG 1.996
  283. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 3.569
  284. gendstat: Russia_MA1.SG Tyumen_HG 0.791
  285. gendstat: Russia_MA1.SG Onge.DG 3.397
  286. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 2.629
  287. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 0.636
  288. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.705
  289. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.971
  290. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.546
  291. gendstat: Georgia_Satsurblia.SG Onge.DG 1.987
  292. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 1.265
  293. gendstat: Kostenki14.SG Russia_Karelia_HG 0.064
  294. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 1.229
  295. gendstat: Kostenki14.SG Tyumen_HG -1.126
  296. gendstat: Kostenki14.SG Onge.DG 1.380
  297. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 0.565
  298. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.264
  299. gendstat: Russia_Karelia_HG Tyumen_HG -1.296
  300. gendstat: Russia_Karelia_HG Onge.DG 1.227
  301. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG 0.480
  302. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -2.615
  303. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.326
  304. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -0.743
  305. gendstat: Tyumen_HG Onge.DG 2.411
  306. gendstat: Tyumen_HG Russia_Shamanka_EN.SG 1.867
  307. gendstat: Onge.DG Russia_Shamanka_EN.SG -1.207
  308.  
  309. ## end of run
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