void setup() {
  //Use this setup code for 12 ticks/revolution
  attachInterrupt(digitalPinToInterrupt(rotaryPinA), encode, FALLING);

/*
  Use this setup code for 24 ticks/revolution
  (trigger interrupt on rising and falling edge)
  attachInterrupt(digitalPinToInterrupt(rotaryPinA), encode, CHANGE);
*/

/*
  Use this setup code for 48 ticks/revolution (trigger interrupts on rising and falling edge of either pin)
  attachInterrupt(digitalPinToInterrupt(rotaryPinA), encode, CHANGE);
  attachInterrupt(digitalPinToInterrupt(rotaryPinB), encodePinB, CHANGE);
*/

//The rest of your setup code...
}

void encode() {
  rotaryValueChanged = true;
  //Read the PinA & PinB (Digital Pins 2 & 3) using port register PINE, 4th and 5th bit
  //Fast equivalent to pinAState = digitalRead(rotaryPinA) == LOW
  bool pinAState = (PINE & (1 << 4)) == 0;
  bool pinBState = (PINE & (1 << 5)) == 0;
  rotaryValue +=  (pinAState == pinBState) ? -1 : 1;
}

void encodePinB() {
  rotaryValueChanged = true;
  //Read the PinA & PinB (Digital Pins 2 & 3) using port register PINE, 4th and 5th bit
  bool pinAState = (PINE & (1 << 4)) == 0;
  bool pinBState = (PINE & (1 << 5)) == 0;
  rotaryValue +=  (pinAState != pinBState) ? -1 : 1;
}